genome.fa.s9.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  146  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48841760--48841951	98	2.0	98	98	0	375	38	17	18	26	1.92
48862832--48863056	40	5.6	40	83	2	272	25	24	27	23	2.00
48862832--48863092	80	3.3	80	82	3	294	25	24	26	23	2.00
48866619--48866679	30	2.0	30	84	6	79	31	24	6	37	1.81
48871985--48872184	27	7.4	27	86	0	229	40	22	8	29	1.82
48871978--48872276	54	5.6	56	80	8	284	37	22	9	30	1.86
48871978--48872184	81	2.6	81	84	0	279	39	23	8	28	1.83
48871978--48872276	27	11.1	26	80	7	192	37	22	9	30	1.86
48872265--48872420	27	5.8	27	85	7	176	30	18	25	26	1.98
48872411--48872479	26	2.7	26	73	13	70	27	15	23	33	1.95
48880633--48880670	13	3.2	12	85	10	51	55	0	15	28	1.41
48884986--48885103	43	2.8	42	81	2	146	33	25	17	23	1.97
48897958--48898026	15	4.6	15	83	0	84	14	17	11	56	1.67
48897949--48898028	30	2.7	30	80	7	99	13	17	13	55	1.70
48903686--48903791	52	2.0	53	94	1	187	22	10	23	43	1.84
48906291--48906491	108	1.8	110	89	4	318	33	17	25	22	1.96
48908948--48908988	20	2.0	20	85	0	55	29	12	19	39	1.88
48908917--48909029	60	1.9	60	83	3	147	23	17	21	38	1.94
48910546--48910607	23	2.7	23	87	0	88	20	19	19	40	1.92
48916363--48916430	34	2.0	34	85	5	93	20	25	23	30	1.98
48920984--48921021	15	2.5	15	95	0	67	34	10	13	42	1.78
48926087--48926170	33	2.6	33	90	1	134	19	22	41	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48929167--48929193	12	2.2	12	100	0	54	51	7	0	40	1.30
48929642--48929739	27	3.5	28	90	2	135	26	13	28	31	1.94
48929670--48929752	27	3.0	27	87	5	96	30	12	25	32	1.92
48933245--48933295	25	2.0	24	82	14	59	37	9	1	50	1.47
48935491--48935712	46	4.8	46	77	9	202	26	18	30	24	1.98
48942089--48942352	46	5.6	45	72	15	182	27	17	29	25	1.97
48942093--48942352	94	2.8	93	78	14	268	27	16	29	25	1.97
48943529--48943656	44	3.0	44	75	16	124	32	28	16	22	1.96
48944764--48944790	13	2.1	13	100	0	54	48	22	0	29	1.51
48947587--48947700	43	2.7	43	87	2	149	26	18	25	29	1.98
48964067--48964233	43	3.9	44	76	8	146	30	23	16	28	1.97
48964126--48964233	44	2.5	45	83	7	134	33	23	15	27	1.95
48975338--48975515	27	6.6	27	83	3	205	26	15	28	29	1.96
48975339--48975494	82	1.9	81	88	3	233	26	15	28	29	1.96
48975335--48975515	82	2.2	81	83	2	229	27	15	27	29	1.96
48990575--48990797	79	2.8	80	80	11	244	26	21	26	25	2.00
48990575--48990797	39	5.7	40	84	6	253	26	21	26	25	2.00
48990575--48990830	79	3.3	79	79	10	199	26	21	26	24	1.99
48996551--48996707	40	3.9	40	88	0	233	24	28	21	26	1.99
48996555--48996707	80	1.9	80	93	0	261	24	27	20	27	1.99
49003142--49003354	57	3.7	57	100	0	426	23	26	26	23	2.00
49005600--49005631	14	2.2	15	94	5	57	56	18	0	25	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49012774--49012852	39	2.0	39	100	0	158	30	5	17	46	1.70
49014796--49014872	37	2.1	36	88	7	111	66	5	11	16	1.41
49016673--49016889	49	4.6	47	74	12	158	25	29	17	27	1.98
49019931--49020024	25	3.8	24	80	10	102	24	18	27	29	1.98
49019931--49020024	48	1.9	49	89	8	147	24	18	27	29	1.98
49022625--49022754	47	2.8	47	85	2	154	24	16	26	32	1.96
49031401--49031482	43	1.9	42	82	2	101	24	29	23	23	1.99
49031641--49031738	28	3.5	28	87	2	126	28	25	10	35	1.89
49031661--49031747	28	3.1	28	91	0	129	28	27	9	34	1.88
49031983--49032059	35	2.2	35	95	0	136	37	18	0	44	1.50
49034773--49034897	62	2.0	62	100	0	250	36	6	26	30	1.81
49036877--49036934	23	2.5	23	97	0	107	39	20	20	18	1.92
49040825--49040956	52	2.7	49	74	10	142	37	11	13	37	1.81
49040953--49041022	35	2.0	35	83	8	90	54	14	8	22	1.67
49047974--49048044	28	2.6	28	80	10	76	29	8	12	49	1.70
49047974--49048044	27	2.6	29	80	10	78	29	8	12	49	1.70
49050349--49050389	21	2.0	21	90	0	64	60	0	29	9	1.28
49050330--49050389	19	3.1	18	73	15	57	63	0	26	10	1.26
49059490--49059523	10	3.1	11	84	16	52	41	14	8	35	1.77
49059487--49059523	12	3.2	12	85	14	60	40	16	8	35	1.78
49060082--49060189	53	2.0	53	98	0	207	34	21	15	28	1.94
49062844--49062904	27	2.3	28	83	8	74	36	22	22	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49074433--49074591	49	3.2	49	78	5	194	30	26	18	24	1.98
49079419--49080414	47	21.5	47	94	3	1725	32	8	29	29	1.87
49079475--49079526	16	3.1	16	70	20	52	30	7	28	32	1.85
49079458--49079526	34	2.0	34	100	0	138	33	5	28	31	1.81
49079458--49079512	18	3.2	18	70	19	62	34	3	29	32	1.75
49080533--49080611	37	2.1	37	86	4	106	26	18	29	25	1.98
49082518--49082591	29	2.6	29	84	4	96	25	14	32	27	1.95
49088973--49089116	40	3.6	40	88	8	204	24	20	28	26	1.99
49089375--49089418	22	2.0	21	83	16	54	31	18	13	36	1.90
49101124--49101331	40	5.2	40	83	7	244	24	20	27	26	1.99
49101124--49101310	79	2.3	81	82	8	238	24	21	27	26	1.99
49101128--49101345	79	2.7	78	78	12	228	24	20	27	26	1.99
49109581--49109644	30	2.2	29	94	2	110	25	15	23	35	1.94
49111382--49111420	19	2.1	19	100	0	78	25	15	20	38	1.92
49118209--49118247	20	2.0	20	89	0	60	48	2	12	35	1.55
49132389--49132431	19	2.3	19	91	0	68	27	0	9	62	1.25
49133830--49133909	32	2.5	32	83	4	99	52	18	2	26	1.58
49137757--49137865	37	2.9	37	94	0	182	26	30	20	22	1.98
49138014--49138111	50	2.0	50	91	4	162	30	25	7	36	1.83
49138069--49138261	47	4.1	47	89	2	246	26	30	10	32	1.90
49138161--49138232	22	3.1	22	64	24	58	23	29	13	33	1.93
49157961--49158005	22	2.0	22	100	0	90	31	13	42	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49159643--49159763	48	2.6	48	75	8	117	24	31	17	26	1.97
49159689--49159813	48	2.6	49	80	10	141	23	32	17	27	1.97
49159585--49159946	94	3.9	95	79	8	352	23	29	19	27	1.98
49160791--49160868	37	2.1	37	100	0	156	32	15	15	37	1.89
49164154--49164185	16	2.0	16	100	0	64	37	6	12	43	1.68
49164835--49164885	25	2.0	25	100	0	102	60	0	15	23	1.35
49164971--49165011	21	2.0	21	90	0	64	41	2	17	39	1.62
49165952--49165994	20	2.2	20	95	0	77	46	11	16	25	1.80
49173053--49173285	55	4.4	52	74	12	172	36	17	24	21	1.95
49173354--49173398	23	1.9	24	90	4	74	42	11	24	22	1.86
49181578--49181654	38	2.0	38	92	0	127	31	24	23	20	1.98
49182059--49182086	9	3.1	9	100	0	56	10	0	75	14	1.06
49182225--49182306	43	1.9	43	97	0	155	21	30	17	30	1.96
49183832--49183875	20	2.2	20	100	0	88	9	27	40	22	1.84
49189219--49189404	48	3.9	48	87	2	248	26	18	25	29	1.98
49192450--49192493	21	2.0	22	83	12	56	43	2	11	43	1.53
49197515--49197569	28	2.0	28	92	0	92	47	29	5	18	1.71
49200769--49200794	9	2.9	9	100	0	52	46	23	19	11	1.82
49201008--49201123	58	2.0	58	98	0	223	37	8	18	36	1.81
49206722--49206760	20	2.0	20	94	0	69	35	15	20	28	1.93
49206746--49206772	11	2.5	11	100	0	54	37	14	18	29	1.91
49206827--49206995	24	7.0	24	87	2	239	29	20	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49206831--49207014	72	2.5	73	85	4	237	29	21	20	28	1.98
49209762--49209802	21	2.0	21	95	0	73	7	19	34	39	1.80
49213535--49213601	20	3.3	20	91	0	107	34	13	20	31	1.92
49213650--49213769	24	5.0	24	88	3	170	29	20	21	29	1.98
49220868--49221695	47	17.6	47	99	0	1620	23	35	12	28	1.91
49221679--49221863	27	7.0	27	82	6	254	28	31	7	32	1.85
49221733--49221895	76	2.1	76	98	0	317	29	30	7	33	1.85
49223388--49223412	13	1.9	13	100	0	50	36	16	16	32	1.90
49242258--49242361	43	2.5	42	78	6	102	28	27	15	27	1.96
49250531--49250707	27	6.5	27	83	3	203	27	15	27	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284