genome.fa.s9.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  209  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69494574--69494619	18	2.6	18	82	3	58	19	23	43	13	1.86
69505123--69505180	30	1.9	30	86	13	84	22	31	29	17	1.96
69510509--69510571	30	2.1	30	96	0	117	26	3	15	53	1.57
69512786--69512846	28	2.1	29	96	3	115	50	9	21	18	1.75
69518320--69518344	13	1.9	13	100	0	50	12	32	40	16	1.84
69521634--69521658	3	8.3	3	100	0	50	36	0	0	64	0.94
69521649--69521738	47	2.0	48	82	12	118	31	3	8	56	1.46
69521714--69521897	46	4.1	44	70	24	120	33	3	4	58	1.38
69521761--69521840	39	2.1	38	83	6	99	31	2	5	61	1.31
69521800--69521847	24	2.0	24	84	12	62	33	0	4	62	1.14
69522177--69522308	43	3.1	43	73	16	157	35	4	6	53	1.46
69522176--69522358	84	2.2	84	100	0	366	34	5	5	54	1.46
69522204--69522334	41	3.1	41	73	16	151	33	5	6	54	1.48
69522220--69522349	41	3.1	41	73	16	149	33	6	5	53	1.50
69522433--69522477	3	15.0	3	100	0	90	33	0	0	66	0.92
69522478--69522530	21	2.5	21	81	0	70	33	1	9	54	1.43
69522601--69522669	25	2.8	25	80	4	88	30	5	4	59	1.40
69522437--69522722	23	12.7	22	69	21	93	34	3	5	56	1.39
69522644--69522722	20	3.6	22	74	12	65	34	1	6	58	1.32
69526842--69526886	22	2.0	22	95	0	81	28	20	4	46	1.69
69535193--69535329	73	1.9	73	92	0	229	30	18	24	26	1.98
69535322--69535355	14	2.5	14	95	4	61	17	20	5	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69535413--69535445	15	2.2	15	94	0	57	15	9	6	69	1.34
69535266--69535531	88	3.0	86	84	7	397	26	16	19	37	1.93
69535413--69535783	101	3.7	101	100	0	742	24	15	18	41	1.89
69535501--69535546	15	3.2	15	87	6	60	15	13	6	65	1.46
69535501--69535549	14	3.5	14	86	8	64	18	14	6	61	1.53
69535602--69535647	15	3.2	15	87	6	60	15	13	6	65	1.46
69535602--69535650	14	3.5	14	86	8	64	18	14	6	61	1.53
69535703--69535748	15	3.2	15	87	6	60	15	13	6	65	1.46
69535703--69535751	14	3.5	14	86	8	64	18	14	6	61	1.53
69535716--69535958	86	2.8	86	80	8	258	27	14	18	39	1.90
69537061--69537085	9	2.8	9	100	0	50	92	8	0	0	0.40
69537735--69537772	3	12.7	3	100	0	76	34	0	0	65	0.93
69537822--69537929	24	4.3	23	75	13	81	35	0	4	59	1.25
69537847--69537941	41	2.3	42	80	10	115	33	1	4	61	1.22
69538064--69538118	20	2.7	19	78	18	58	38	3	1	56	1.28
69538084--69538124	9	4.4	9	90	3	64	41	0	2	56	1.13
69538193--69538249	27	2.1	28	83	3	71	36	7	5	50	1.52
69538447--69538486	3	13.3	3	100	0	80	32	0	0	67	0.91
69538484--69538522	19	2.0	20	85	10	53	35	2	7	53	1.43
69538593--69538663	25	3.0	24	79	10	74	28	7	5	59	1.47
69538584--69538663	25	3.2	26	77	8	69	28	6	5	60	1.43
69546693--69546811	28	4.2	28	84	6	150	14	26	18	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69546693--69546818	57	2.2	56	84	4	155	14	26	17	42	1.87
69554468--69554520	17	2.7	19	83	16	65	32	0	3	64	1.12
69554668--69554721	23	2.3	23	87	0	81	35	5	0	59	1.21
69554467--69554721	3	86.3	3	69	12	109	27	6	3	61	1.39
69554811--69554843	3	11.0	3	93	0	57	33	3	0	63	1.10
69555346--69555408	24	2.6	24	80	7	65	25	6	4	63	1.38
69556467--69556653	97	1.9	97	100	0	374	31	16	16	35	1.91
69558371--69558419	21	2.4	21	86	3	64	8	26	10	55	1.61
69561004--69561085	34	2.4	35	77	6	87	35	13	12	39	1.82
69561353--69561414	21	3.1	21	70	11	58	29	22	16	32	1.95
69562615--69562678	33	1.9	34	84	15	89	45	0	0	54	0.99
69564662--69564721	31	1.9	31	82	3	75	50	3	20	26	1.64
69570980--69571019	14	2.9	14	84	0	53	32	7	17	42	1.77
69571003--69571042	20	2.0	20	90	0	62	27	10	12	50	1.72
69570988--69571054	34	1.9	35	87	3	100	32	8	11	46	1.72
69572598--69572666	29	2.4	28	79	13	70	60	2	2	33	1.26
69572573--69572671	9	10.7	9	69	17	60	63	2	2	32	1.17
69572765--69572804	21	1.9	21	85	10	55	67	0	2	30	1.04
69573297--69573353	10	5.7	10	77	10	55	38	3	1	56	1.27
69573315--69573371	21	2.8	21	82	12	73	42	3	1	52	1.28
69573418--69573518	10	10.3	10	70	15	50	24	3	3	67	1.25
69573388--69573451	32	2.0	32	82	11	78	28	3	4	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69573466--69573511	9	4.8	9	82	15	56	23	0	6	69	1.11
69573467--69573510	21	2.1	21	95	0	79	20	0	6	72	1.07
69573476--69573501	12	2.2	12	100	0	52	15	0	7	76	0.99
69573657--69573712	29	2.0	28	82	3	67	32	8	25	33	1.87
69588946--69588970	6	4.2	6	100	0	50	52	32	16	0	1.44
69593092--69593187	39	2.5	39	76	21	105	48	1	1	48	1.15
69593092--69593187	7	14.1	7	73	17	60	48	1	1	48	1.15
69594379--69594444	22	3.0	23	82	6	82	19	22	18	39	1.92
69597567--69597592	13	2.0	13	100	0	52	30	7	7	53	1.57
69601632--69601949	159	2.0	159	100	0	636	37	8	18	35	1.82
69601235--69601808	319	1.8	314	95	1	927	45	6	19	28	1.75
69604272--69604305	16	2.1	16	100	0	68	17	11	23	47	1.81
69606277--69606526	46	5.5	46	89	3	380	18	23	13	44	1.85
69606278--69606559	137	2.1	136	85	5	372	19	23	13	42	1.87
69606508--69606619	43	2.5	44	84	8	138	22	24	16	36	1.94
69617889--69617996	9	11.4	9	69	15	67	20	6	5	67	1.34
69617924--69617987	20	3.3	19	75	14	60	20	9	4	65	1.39
69617888--69617997	28	3.9	27	78	15	100	21	6	5	66	1.35
69617888--69617996	19	5.9	17	71	22	62	21	6	5	66	1.35
69617955--69618005	19	2.7	18	80	14	59	25	5	5	62	1.41
69618544--69618617	29	2.7	26	78	13	94	59	0	0	40	0.97
69623628--69623683	18	3.1	18	82	10	78	39	14	12	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69624622--69624668	15	2.9	17	72	15	55	55	2	0	42	1.12
69630067--69630174	26	4.2	26	93	0	189	36	24	7	32	1.83
69637163--69637244	26	3.2	26	94	0	146	36	24	8	30	1.85
69642775--69642895	45	2.6	44	79	6	116	60	0	4	33	1.24
69642837--69642873	12	3.0	12	84	7	56	59	0	5	35	1.20
69642837--69642870	13	2.7	13	86	4	52	58	0	5	35	1.22
69642830--69642887	25	2.3	26	81	6	73	60	0	3	36	1.14
69646054--69646089	18	2.0	18	89	10	56	50	0	5	44	1.25
69647978--69648080	48	2.1	48	85	3	136	39	8	14	36	1.77
69649404--69649678	139	2.0	139	98	0	532	33	11	18	37	1.86
69653076--69653102	14	1.9	14	100	0	54	40	7	14	37	1.74
69653443--69653474	13	2.5	13	94	0	55	56	15	0	28	1.40
69653521--69653557	19	1.9	19	94	0	65	43	21	5	29	1.75
69658821--69658872	22	2.4	22	87	3	70	17	13	17	51	1.76
69665600--69665634	2	17.5	2	87	0	52	48	0	0	51	1.00
69666409--69666452	17	2.7	16	83	13	54	52	0	4	43	1.22
69666580--69666651	32	2.2	33	82	7	85	40	6	8	44	1.61
69668152--69668193	21	2.0	21	86	4	59	47	4	0	47	1.23
69668324--69668383	31	1.9	31	86	0	84	36	8	16	38	1.79
69670714--69670865	75	2.0	75	98	0	295	9	23	36	31	1.86
69685376--69685427	13	4.4	11	75	17	50	3	11	0	84	0.74
69685376--69685427	24	2.2	24	93	6	88	3	11	0	84	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69685384--69685432	13	3.8	13	78	10	57	4	12	0	83	0.77
69685378--69685433	19	2.9	18	84	10	67	3	12	0	83	0.76
69693076--69693125	18	2.7	19	87	6	84	36	12	12	40	1.79
69693735--69693799	30	2.2	28	81	10	69	63	3	4	29	1.30
69693920--69693957	17	2.5	15	87	12	51	34	15	10	39	1.82
69693919--69693978	19	3.3	19	90	4	97	36	16	10	36	1.82
69694081--69694327	123	2.0	123	99	0	485	27	20	21	31	1.98
69694467--69695594	207	5.5	207	93	0	1837	29	22	17	29	1.97
69695723--69695916	43	4.5	43	72	14	143	21	24	24	30	1.99
69695722--69696092	87	4.4	85	84	8	490	22	22	25	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284