Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  94  of  284  ( 34012 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30940691--30940777
40
2.2
40
81
4
95
39
17
8
35
1.79
30941632--30941673
16
2.8
16
89
7
61
40
4
0
54
1.21
30947633--30947700
25
2.6
26
81
4
75
41
0
16
42
1.48
30950123--30950207
37
2.3
38
87
4
120
15
17
25
41
1.89
30952901--30953126
48
4.8
48
76
7
230
27
24
19
28
1.99
30957292--30957336
22
2.0
22
100
0
90
53
22
4
20
1.63
30957908--30958094
48
3.9
48
93
0
320
21
26
21
29
1.99
30966211--30966420
40
5.3
39
89
4
242
25
21
27
25
1.99
30966158--30966420
120
2.2
120
82
4
309
25
21
27
25
1.99
30966159--30966455
80
3.7
80
81
6
230
26
21
27
24
1.99
30974162--30974371
40
5.3
39
89
4
242
25
21
27
25
1.99
30974109--30974371
120
2.2
120
82
4
309
25
21
27
25
1.99
30974110--30974406
80
3.7
80
81
6
230
26
21
27
24
1.99
30977804--30977859
25
2.2
26
78
9
62
48
8
3
39
1.52
30984218--30984255
11
3.2
12
92
7
60
0
52
0
47
1.00
30984757--30984802
23
2.0
23
83
8
58
30
2
10
56
1.46
30987319--30987362
19
2.3
20
84
7
56
27
20
11
40
1.86
30991455--30991718
86
3.1
86
89
0
402
26
22
23
27
2.00
30991796--30991931
45
3.1
44
66
19
113
27
19
23
28
1.99
30991986--30993301
44
29.6
44
71
15
578
31
20
22
25
1.98
30992207--30992943
87
8.4
87
91
3
1160
31
22
21
24
1.98
30992207--30993069
174
4.9
174
91
3
1164
31
21
22
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30992993--30993383
188
2.1
187
87
4
565
32
19
20
27
1.96
30993183--30993350
44
3.8
44
77
6
126
32
16
20
29
1.95
30993539--30993792
40
6.3
40
96
0
447
23
27
19
29
1.98
30998025--30998139
58
2.0
58
92
0
194
17
26
19
37
1.93
31002289--31002458
40
4.2
40
93
0
295
21
28
20
29
1.98
31002459--31002758
161
1.9
161
100
0
600
36
23
10
30
1.87
31018912--31018941
13
2.3
13
94
0
51
53
0
30
16
1.44
31020573--31020597
13
1.9
13
100
0
50
60
16
8
16
1.58
31022052--31022080
6
4.8
6
100
0
58
51
0
48
0
1.00
31040075--31040114
16
2.4
17
91
8
73
72
15
0
12
1.12
31043059--31043107
21
2.3
21
82
0
62
26
28
22
22
1.99
31043264--31043307
24
1.9
23
86
9
63
61
0
0
38
0.96
31044652--31044711
30
2.0
30
90
6
95
33
0
48
18
1.48
31044760--31044797
18
2.1
18
90
0
58
28
10
10
50
1.70
31048445--31048538
43
2.2
43
83
7
111
28
19
23
28
1.98
31055390--31055510
47
2.6
47
95
0
215
38
12
24
23
1.90
31055489--31055697
54
3.9
54
82
5
251
35
17
24
22
1.95
31058959--31059107
43
3.5
44
72
9
128
26
16
23
32
1.96
31065907--31065973
31
2.2
31
97
0
125
47
16
31
4
1.66
31067130--31067158
13
2.2
13
100
0
58
31
0
13
55
1.39
31068745--31068898
67
2.3
65
84
7
184
31
16
29
22
1.95
31080114--31080152
15
2.6
15
91
0
60
20
17
20
41
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31082220--31082262
20
2.2
20
95
0
77
13
30
34
20
1.92
31089099--31089162
6
11.5
6
74
12
57
78
1
4
15
1.00
31089105--31089162
21
2.7
22
83
5
82
77
1
5
15
1.02
31089112--31089159
16
3.1
16
88
8
73
77
0
6
16
0.97
31100805--31100849
14
3.3
14
80
20
51
22
8
11
57
1.60
31114133--31114305
46
3.7
46
80
13
219
21
21
28
28
1.98
31114130--31114300
93
1.8
93
96
0
315
21
21
29
28
1.98
31117812--31117849
17
2.2
17
95
0
67
21
7
10
60
1.54
31118072--31118119
21
2.2
21
96
3
87
45
18
8
27
1.78
31122906--31122991
39
2.2
39
95
0
154
20
4
29
45
1.71
31136514--31136607
25
3.8
25
88
5
138
53
0
19
27
1.45
31141470--31141539
33
2.1
32
85
15
90
40
1
1
57
1.17
31150486--31150663
27
6.6
27
84
3
205
29
28
15
26
1.96
31150507--31150662
82
1.9
81
88
3
233
29
28
15
26
1.96
31174401--31174438
14
2.9
13
81
11
51
18
13
10
57
1.63
31186647--31186723
38
2.0
38
100
0
154
45
18
12
23
1.84
31188512--31188952
219
2.0
219
99
0
873
33
13
19
32
1.91
31196334--31196371
14
2.9
13
81
11
51
57
10
13
18
1.63
31213030--31213064
7
5.0
7
92
0
61
42
40
0
17
1.49
31222934--31222973
13
3.1
13
81
0
53
35
30
7
27
1.84
31223857--31223966
57
1.9
58
88
1
168
43
9
18
29
1.80
31225452--31225506
28
2.0
28
89
7
85
32
21
21
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31225612--31225676
28
2.3
28
94
0
112
30
7
27
33
1.85
31232365--31232409
20
2.1
22
92
8
76
8
13
0
77
0.98
31232388--31232431
14
3.1
15
84
15
58
4
18
2
75
1.09
31232374--31232418
20
2.2
20
84
7
56
4
20
0
75
0.97
31232371--31232431
17
3.7
15
77
14
50
3
18
1
77
0.99
31233850--31233887
20
2.0
20
89
5
60
31
18
23
26
1.97
31238299--31238367
6
11.3
6
75
13
61
79
2
2
14
0.96
31238315--31238366
19
2.8
18
88
5
68
78
3
1
15
0.98
31241393--31241543
39
3.8
39
86
4
180
20
23
27
28
1.99
31241514--31241619
35
2.9
35
77
12
104
22
23
22
31
1.99
31243383--31243425
3
14.3
3
80
9
52
62
0
2
34
1.08
31243354--31243412
21
2.7
21
76
7
55
61
3
6
28
1.38
31245832--31245871
21
1.9
21
89
0
62
25
35
2
37
1.69
31247399--31247444
6
8.0
6
80
9
51
78
0
4
17
0.91
31256799--31256830
12
2.6
12
95
5
55
15
0
3
81
0.82
31261161--31261329
46
3.7
46
80
4
214
30
28
20
21
1.98
31261162--31261332
93
1.8
93
94
0
306
29
28
20
21
1.98
31264478--31264640
62
2.6
62
82
1
202
19
26
25
27
1.99
31265210--31265276
27
2.3
29
78
14
77
71
1
13
13
1.21
31271645--31271789
62
2.3
62
86
2
193
23
24
24
27
2.00
31273128--31273171
21
2.2
19
84
8
52
47
0
4
47
1.22
31274109--31274162
18
2.9
18
80
5
54
31
22
14
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31276018--31276071
6
8.7
6
89
6
63
74
0
5
20
1.02
31282284--31282328
6
7.5
6
97
0
81
13
0
68
17
1.20
31289062--31289086
13
1.9
13
100
0
50
24
0
32
44
1.54
31297679--31297720
20
2.1
20
91
8
68
71
4
0
23
1.05
31299133--31299166
15
2.2
16
89
5
52
41
2
11
44
1.56
31305194--31305279
44
2.0
44
97
0
163
37
12
6
43
1.70
31306434--31306459
12
2.2
12
100
0
52
19
34
15
30
1.93
31307614--31307643
14
2.1
14
93
0
51
46
36
0
16
1.47
31320089--31320145
29
2.0
29
86
13
82
35
0
1
63
1.05
31320788--31320834
23
2.0
23
91
0
76
29
27
14
27
1.96
31328184--31328223
17
2.4
17
100
0
80
22
22
0
55
1.44
31330082--31330133
27
1.9
27
100
0
104
11
15
11
61
1.57
31330855--31330888
4
8.5
4
100
0
68
76
0
23
0
0.79
31335210--31335247
6
6.3
6
100
0
76
34
65
0
0
0.93
31335908--31336035
68
1.9
68
90
3
204
24
7
17
50
1.71
31341006--31341049
22
2.0
22
95
0
79
29
22
11
36
1.89
31341719--31341822
15
7.2
15
65
18
60
50
31
1
15
1.55
31357074--31357098
11
2.3
11
100
0
50
40
0
36
24
1.55
31357614--31357788
10
18.1
10
68
15
75
29
1
4
64
1.20
31357653--31357755
19
5.4
19
67
15
61
29
0
2
67
1.05
31357833--31357872
9
4.3
9
87
6
53
35
5
2
57
1.34
31357821--31357872
19
2.7
18
82
8
59
36
3
3
55
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31357815--31357881
28
2.3
30
75
14
70
38
2
2
55
1.31
31357865--31357903
19
2.2
17
90
9
60
38
2
0
58
1.12
31357869--31357940
12
6.5
11
73
16
51
30
2
1
65
1.15
31360402--31360461
29
2.1
29
81
9
70
25
6
5
63
1.39
31362992--31363039
24
2.0
24
91
0
78
35
22
6
35
1.80
31367387--31367505
3
39.7
3
100
0
238
32
0
0
67
0.91
31367613--31367660
26
1.9
24
87
8
69
72
2
22
2
1.05
31369073--31369164
42
2.2
42
83
9
109
19
34
29
16
1.94
31385623--31386205
293
2.0
293
98
0
1139
35
20
17
26
1.95
31392245--31392281
12
3.1
12
88
0
56
70
0
2
27
1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284