genome.fa.s9.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  134  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44792069--44792207	58	2.4	57	86	2	197	53	2	0	43	1.15
44792069--44792235	58	2.9	56	83	7	176	54	2	0	41	1.20
44794650--44794791	72	2.0	73	87	4	207	52	14	14	19	1.74
44797312--44797348	18	1.9	19	89	10	58	54	0	0	45	1.00
44797332--44797365	13	2.8	13	91	8	54	55	0	0	44	0.99
44797403--44797459	23	2.4	25	82	5	73	61	1	0	36	1.07
44797419--44797496	31	2.4	31	83	14	88	61	1	0	37	1.04
44797437--44797497	20	3.2	20	81	13	74	59	0	0	40	0.98
44797342--44797641	134	2.2	137	86	9	402	55	2	2	39	1.28
44797574--44797659	30	2.7	31	83	13	111	58	1	1	39	1.13
44797592--44797638	22	2.3	20	85	10	60	59	2	2	36	1.21
44797627--44797684	24	2.4	25	80	13	68	53	5	0	41	1.23
44797627--44797688	25	2.6	23	75	14	63	53	4	0	41	1.22
44798009--44798064	24	2.3	25	84	9	71	41	0	1	57	1.09
44798095--44798124	13	2.2	14	94	5	53	43	3	0	53	1.17
44798114--44798183	20	3.6	17	71	25	59	47	0	0	52	1.00
44797925--44798193	134	2.0	129	79	11	280	40	2	2	54	1.27
44798102--44798204	42	2.4	41	90	4	152	49	0	0	50	1.00
44798123--44798194	20	3.5	20	75	20	85	47	0	0	52	1.00
44798135--44798203	21	3.3	21	73	15	79	53	0	0	46	1.00
44798872--44798932	29	2.1	29	100	0	122	39	3	8	49	1.49
44800085--44800117	16	2.1	16	88	11	50	24	6	0	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44804124--44804154	15	2.1	15	100	0	62	51	6	12	29	1.65
44808080--44808260	43	4.3	40	75	14	159	28	24	20	25	1.99
44808080--44808260	85	2.1	85	94	0	317	28	24	20	25	1.99
44828309--44828334	12	2.2	12	100	0	52	50	7	0	42	1.31
44828820--44828997	27	6.6	27	83	3	205	26	15	28	29	1.96
44828821--44828976	82	1.9	81	88	3	233	26	15	28	29	1.96
44828817--44828997	82	2.2	81	83	2	229	27	15	27	29	1.96
44832160--44832337	27	6.6	27	83	3	205	26	15	28	29	1.96
44832161--44832316	82	1.9	81	88	3	233	26	15	28	29	1.96
44832157--44832337	82	2.2	81	83	2	229	27	15	27	29	1.96
44837447--44837620	46	3.8	46	78	7	158	23	29	20	27	1.99
44837493--44837666	94	1.9	92	84	7	235	23	28	20	28	1.99
44839492--44839532	20	2.0	20	85	0	55	43	21	24	9	1.83
44839512--44839566	27	2.0	27	96	0	101	36	20	25	18	1.94
44847941--44847971	5	6.2	5	100	0	62	80	0	0	19	0.71
44849236--44849377	60	2.4	59	92	3	232	35	21	15	27	1.94
44852407--44852446	19	2.1	19	85	0	53	42	12	10	35	1.76
44858880--44859063	40	4.6	40	80	10	198	27	22	23	25	2.00
44858880--44859063	80	2.3	80	84	5	230	27	22	23	25	2.00
44866619--44866802	40	4.6	40	83	6	230	25	23	26	24	2.00
44866619--44866807	80	2.4	80	87	3	256	24	23	25	25	2.00
44876716--44876781	5	12.6	5	75	20	55	77	0	4	18	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44876715--44876781	11	6.3	11	79	11	59	77	0	4	17	0.93
44878610--44878639	5	5.8	5	96	4	51	76	0	23	0	0.78
44889722--44889895	47	3.7	46	72	11	174	29	30	17	22	1.97
44889676--44889891	93	2.3	93	91	1	344	29	31	18	20	1.97
44889669--44889835	46	3.6	44	70	13	131	30	31	17	19	1.96
44902715--44902810	43	2.2	43	83	5	122	22	13	26	37	1.91
44906469--44906680	43	5.0	43	79	5	216	33	24	15	26	1.95
44910060--44910116	29	2.0	29	100	0	114	38	12	28	21	1.89
44910338--44910630	58	5.1	58	100	0	586	19	17	19	44	1.87
44911735--44911977	40	6.1	40	89	3	359	25	21	26	26	2.00
44917987--44918043	29	2.0	29	100	0	114	38	12	28	21	1.89
44918266--44918500	58	4.1	58	100	0	470	19	17	19	44	1.87
44919602--44919858	40	6.5	40	88	3	342	25	21	26	26	1.99
44921335--44921496	71	2.3	69	82	2	189	34	20	24	19	1.96
44922135--44922241	54	2.0	54	81	3	126	25	17	18	38	1.93
44922149--44922271	27	4.6	27	77	6	99	25	14	19	40	1.89
44922147--44922271	54	2.3	53	81	6	135	25	14	20	40	1.90
44922256--44922332	27	2.9	27	86	3	93	25	5	22	46	1.72
44922285--44922343	27	2.2	27	84	0	73	27	6	18	47	1.74
44926855--44926969	29	4.0	29	81	6	128	27	30	14	26	1.95
44933827--44933862	18	2.0	18	100	0	72	27	5	33	33	1.80
44933781--44933909	65	2.0	65	96	0	240	31	7	30	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44933845--44933947	47	2.2	47	100	0	206	31	7	30	31	1.86
44933920--44933967	23	2.1	23	100	0	96	35	0	29	35	1.58
44933873--44934014	70	2.0	70	98	0	275	33	5	28	31	1.81
44933943--44934106	47	3.5	47	98	0	310	33	7	28	30	1.86
44933728--44934183	117	3.9	118	87	9	584	32	7	28	30	1.86
44934081--44934132	26	2.0	26	100	0	104	30	7	30	30	1.85
44934034--44934181	75	2.0	74	96	2	271	31	8	29	30	1.87
44934107--44934473	49	7.6	49	95	2	656	33	8	28	30	1.86
44933870--44934229	122	3.0	121	88	9	494	32	8	28	30	1.86
44933845--44934277	169	2.6	164	94	2	767	32	8	28	30	1.86
44934110--44934473	96	3.8	96	95	2	669	33	7	28	30	1.85
44936427--44936598	46	3.7	46	80	13	217	20	19	29	29	1.97
44936420--44936591	93	1.8	93	96	0	317	21	20	29	28	1.98
44938989--44939079	6	14.8	6	70	17	62	47	14	17	20	1.82
44939003--44939073	25	2.8	25	84	0	88	47	14	18	19	1.82
44939031--44939102	31	2.3	32	92	2	119	51	12	15	20	1.75
44939239--44939339	27	3.8	27	81	7	116	34	21	24	18	1.96
44939498--44939562	22	3.0	22	80	8	78	33	23	23	20	1.97
44939939--44940134	27	7.3	27	88	0	239	25	19	20	34	1.96
44939931--44940134	54	3.8	54	87	0	273	24	19	21	34	1.96
44939931--44940134	81	2.5	81	82	1	266	24	19	21	34	1.96
44939984--44940513	27	19.7	26	80	5	333	30	11	20	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44940254--44940513	54	4.8	54	88	4	373	31	8	19	40	1.82
44949242--44949313	29	2.5	29	86	6	94	31	30	15	22	1.94
44949274--44949355	41	2.0	41	97	0	155	31	32	12	23	1.91
44949339--44949439	28	3.6	28	76	7	96	27	28	21	21	1.99
44949315--44949441	57	2.2	57	90	0	191	29	29	18	22	1.97
44949449--44949684	40	5.9	40	91	3	370	27	28	22	22	1.99
44951464--44951572	37	2.9	37	93	0	164	27	33	17	22	1.96
44951611--44952054	47	9.4	47	97	1	809	27	29	10	32	1.90
44957991--44958108	61	1.9	61	94	0	209	37	21	11	29	1.89
44959859--44959896	19	2.0	20	85	15	53	39	23	0	36	1.55
44960125--44960292	46	3.6	45	75	12	153	29	28	19	22	1.98
44960126--44960296	93	1.8	93	88	0	261	29	28	19	21	1.98
44967720--44967890	93	1.8	93	88	0	261	29	28	20	22	1.98
44967715--44967887	46	3.7	46	74	10	172	30	27	20	22	1.98
44981363--44981393	12	2.6	12	100	0	62	25	16	12	45	1.83
44981441--44981497	5	11.0	5	75	20	55	3	17	1	77	1.00
44981441--44981497	16	3.7	14	82	15	60	3	17	1	77	1.00
44981441--44981508	21	3.2	21	76	15	61	2	17	2	76	1.04
44982412--44982468	23	2.4	24	88	2	80	14	7	8	70	1.33
44982412--44982468	12	4.9	11	81	10	60	14	7	8	70	1.33
44982412--44982465	11	4.7	12	84	11	69	12	7	7	72	1.28
44983542--44983566	13	1.9	13	100	0	50	36	16	32	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44986085--44986137	22	2.4	22	100	0	106	43	30	3	22	1.71
44988592--44988824	27	8.7	27	80	0	234	42	16	13	27	1.86
44988592--44988824	81	2.9	80	83	1	261	42	16	13	27	1.86
44988941--44988974	17	1.9	17	88	5	50	14	38	29	17	1.90
44991720--44992817	47	23.3	47	97	0	2034	29	29	8	32	1.87
44991770--44991848	25	3.3	25	66	16	76	31	29	5	34	1.79
44992801--44992834	17	2.0	17	100	0	68	35	23	5	35	1.79
44992752--44992881	64	2.0	65	92	3	217	30	26	7	34	1.85
45000652--45000911	27	9.7	27	87	1	317	40	17	15	26	1.89
45000645--45000911	53	5.0	54	88	0	331	40	17	14	26	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284