genome.fa.s9.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  111  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36421454--36421863	54	7.6	54	78	6	263	32	7	22	37	1.83
36421655--36421863	81	2.6	81	85	0	292	35	6	24	33	1.82
36421548--36421852	27	11.3	27	83	4	231	32	6	22	37	1.81
36423667--36423808	20	7.1	20	63	9	65	32	16	31	19	1.94
36423625--36423808	40	4.6	40	84	3	219	34	16	30	18	1.93
36442076--36442238	40	4.1	40	81	4	177	37	17	27	17	1.92
36442083--36442238	80	2.0	80	83	2	197	36	17	27	18	1.93
36446135--36446312	27	6.6	27	80	7	146	28	14	28	29	1.95
36446136--36446286	82	1.9	81	84	4	205	28	14	27	29	1.95
36446132--36446312	82	2.2	81	80	2	202	28	14	27	29	1.95
36453266--36453299	17	1.9	17	94	5	59	17	23	38	20	1.93
36453636--36453713	27	2.9	27	88	3	104	39	19	10	30	1.85
36453666--36453754	27	3.3	27	77	3	90	41	19	11	28	1.85
36459889--36459921	10	3.2	10	95	4	57	18	0	51	30	1.46
36459983--36460084	50	2.0	50	90	5	170	24	8	39	26	1.84
36461991--36462055	28	2.4	28	86	2	87	21	23	21	33	1.97
36463507--36463547	19	2.2	19	100	0	82	21	26	36	14	1.93
36468337--36468437	27	3.7	27	82	11	107	41	19	8	29	1.82
36468391--36468451	27	2.2	28	88	2	88	40	16	13	29	1.86
36468507--36468542	14	2.6	14	95	0	63	16	8	33	41	1.78
36469235--36469303	32	2.2	32	82	10	79	13	20	24	42	1.87
36472173--36472233	30	2.0	30	87	0	86	37	8	24	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36483327--36483421	46	2.1	46	93	0	163	43	23	3	30	1.69
36483536--36483602	30	2.2	29	89	7	107	20	31	25	22	1.98
36483915--36483953	10	3.7	11	86	10	55	51	25	7	15	1.70
36489059--36489363	40	7.6	40	92	0	493	26	21	28	23	1.99
36489059--36489363	120	2.5	120	97	0	565	26	21	28	23	1.99
36496304--36496752	239	1.9	239	94	0	792	28	10	26	34	1.90
36497307--36497529	39	5.7	40	84	8	257	25	21	27	25	2.00
36497307--36497529	79	2.8	80	81	11	262	25	21	27	25	2.00
36497359--36497562	79	2.6	79	81	8	195	26	21	27	25	1.99
36500216--36500265	20	2.6	19	75	25	59	44	10	20	26	1.82
36503251--36503316	19	3.2	21	87	6	64	36	19	9	34	1.84
36503268--36503329	19	3.2	19	93	4	97	35	16	11	37	1.84
36504770--36504872	34	3.1	34	83	6	95	27	23	22	27	1.99
36508056--36508093	14	2.6	15	83	8	51	18	0	2	78	0.86
36517148--36517191	20	2.2	20	95	0	79	38	25	2	34	1.68
36522503--36522626	43	2.9	43	87	1	169	22	30	21	25	1.99
36525109--36525181	36	2.0	36	97	0	137	28	13	28	28	1.94
36525244--36525321	41	1.9	41	100	0	156	26	14	16	42	1.86
36527995--36528151	43	3.8	40	77	11	122	28	24	17	30	1.97
36528901--36528926	10	2.6	10	100	0	52	61	19	7	11	1.53
36536490--36536532	22	2.0	22	100	0	86	9	30	32	27	1.88
36538199--36538269	6	11.7	6	91	7	90	25	5	1	67	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36550546--36550583	20	1.9	20	89	10	60	42	7	10	39	1.69
36561014--36561167	43	3.6	43	76	6	125	29	25	18	26	1.98
36566510--36566623	27	4.2	26	83	8	131	19	21	21	36	1.95
36571242--36572157	47	19.5	47	97	0	1706	30	12	31	25	1.93
36572127--36572703	48	11.8	48	87	7	840	36	6	25	31	1.81
36571242--36572552	141	9.2	139	90	5	1339	32	10	29	27	1.91
36572128--36572717	98	6.0	98	97	0	1096	36	6	26	31	1.82
36572849--36572956	37	2.9	37	95	0	189	23	19	31	25	1.98
36582719--36582756	20	1.9	20	94	0	67	31	26	7	34	1.85
36582886--36582981	47	2.0	47	88	9	142	8	54	3	34	1.46
36584167--36584272	49	2.3	46	84	10	151	35	0	54	8	1.37
36584511--36584567	30	1.9	30	85	3	80	42	5	7	45	1.53
36593529--36593632	26	4.0	26	93	0	181	35	24	7	32	1.84
36596555--36596593	19	2.0	20	85	5	53	43	10	7	38	1.67
36600045--36600104	30	2.0	30	96	0	111	26	21	18	33	1.96
36602691--36602769	37	2.1	37	88	4	115	25	30	18	25	1.98
36602888--36603137	47	5.3	47	91	0	392	28	31	9	30	1.88
36607090--36607361	75	3.9	64	77	15	186	31	22	17	27	1.97
36607144--36607443	75	3.9	77	88	2	426	31	21	17	29	1.96
36608436--36608510	37	2.0	37	97	0	141	20	20	18	41	1.91
36618689--36618723	17	2.1	17	88	0	52	71	17	0	11	1.14
36628032--36628506	44	10.8	42	74	11	323	31	17	24	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36628020--36628420	175	2.3	175	88	2	590	31	16	24	26	1.97
36628033--36628506	132	3.6	132	87	2	607	31	17	24	27	1.97
36628033--36628506	88	5.4	88	75	8	367	31	17	24	27	1.97
36628468--36629407	206	4.6	206	91	0	1391	30	17	22	29	1.96
36629801--36629843	19	2.1	21	91	8	72	37	9	18	34	1.83
36634480--36634504	13	1.9	13	100	0	50	88	0	0	12	0.53
36635872--36635967	40	2.5	40	84	3	115	38	32	12	16	1.86
36640702--36640782	42	1.9	42	87	5	119	28	24	20	25	1.99
36646090--36646307	40	5.5	40	85	4	266	22	22	28	26	1.99
36653017--36653234	40	5.5	40	89	3	291	22	23	28	25	1.99
36658252--36658323	31	2.3	31	83	4	83	13	33	30	22	1.93
36665911--36666814	40	22.6	40	98	0	1684	22	22	27	27	1.99
36671612--36671649	12	3.2	12	100	0	76	15	42	15	26	1.87
36681697--36681792	42	2.3	43	83	8	117	34	18	15	31	1.93
36685758--36686364	311	2.0	311	92	1	1020	34	20	12	32	1.89
36691162--36691214	22	2.4	22	81	9	63	20	22	13	43	1.86
36695037--36695157	57	2.1	57	87	3	172	40	21	4	33	1.72
36695069--36695167	19	5.2	19	74	4	92	40	22	6	31	1.78
36695350--36695438	24	3.7	24	81	3	99	32	19	23	24	1.97
36703021--36703054	17	2.0	17	88	0	50	14	32	41	11	1.82
36712836--36712971	27	5.0	27	84	5	168	36	16	12	34	1.87
36731852--36731898	20	2.5	19	80	10	51	27	44	21	6	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36731865--36731904	20	2.0	20	95	0	71	22	42	25	10	1.84
36733079--36733117	6	6.5	6	93	0	51	76	0	15	7	0.99
36733079--36733117	12	3.2	12	88	0	60	76	0	15	7	0.99
36733278--36733337	10	5.8	10	75	14	50	78	3	1	16	0.97
36733277--36733332	6	9.3	6	78	18	55	78	3	0	17	0.89
36733276--36733332	16	3.6	16	72	23	57	77	3	0	19	0.92
36742006--36742268	40	6.6	39	86	4	278	25	27	21	25	1.99
36742006--36742268	120	2.2	119	82	4	307	25	27	21	25	1.99
36742200--36742277	40	1.9	41	82	10	97	26	28	20	24	1.99
36747970--36748454	242	2.0	242	99	0	952	26	21	17	34	1.95
36749461--36749883	40	10.6	40	91	1	627	27	27	20	24	1.99
36754947--36755031	30	2.9	30	92	1	136	38	5	7	48	1.55
36755750--36755831	43	1.9	43	92	0	137	39	20	12	28	1.89
36759772--36759811	20	2.0	20	85	0	53	40	15	5	40	1.68
36771584--36771735	27	5.6	27	93	3	241	26	13	28	30	1.94
36771584--36771735	55	2.8	55	94	0	259	26	13	28	30	1.94
36774756--36774785	15	2.0	15	93	0	51	50	13	23	13	1.77
36783219--36783279	30	2.0	30	87	0	86	29	24	4	40	1.76
36787626--36787888	40	6.6	40	88	3	307	24	20	28	27	1.99
36792787--36792981	98	2.0	98	97	0	372	29	21	24	24	1.99
36795694--36795865	79	2.2	79	84	3	220	25	21	27	25	1.99
36795641--36795863	40	5.6	39	81	8	209	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36795721--36795898	79	2.2	80	80	3	191	25	21	28	24	1.99
36800471--36800587	39	3.0	39	91	0	180	29	28	19	22	1.98
36800423--36800587	78	2.1	78	80	5	174	29	29	19	21	1.98
36810960--36811205	40	6.2	40	90	3	324	24	27	23	24	2.00
36817620--36817802	79	2.3	81	85	7	241	24	28	22	24	2.00
36817618--36817802	40	4.7	40	82	7	225	24	28	22	23	1.99
36841512--36841627	42	2.8	42	80	5	128	29	15	24	31	1.95
36844397--36844459	33	1.9	33	93	0	108	39	3	17	39	1.66
36845835--36845896	26	2.3	27	81	10	74	35	27	11	25	1.90
36846000--36846114	27	4.3	27	85	7	144	20	21	21	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284