genome.fa.s9.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  152  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50890011--50890094	42	2.0	42	85	0	114	29	23	23	22	1.99
50901252--50901312	30	2.0	30	83	0	77	31	22	8	37	1.84
50908772--50908834	32	2.0	32	100	0	126	36	9	25	28	1.87
50910777--50910825	25	2.0	25	95	0	89	44	24	8	22	1.79
50912111--50912158	24	2.0	24	100	0	96	25	20	20	33	1.97
50930591--50930657	20	3.3	20	89	0	107	32	13	20	32	1.92
50930708--50930780	23	3.1	23	94	3	128	28	20	20	30	1.98
50930707--50930801	24	4.0	24	89	6	140	28	21	22	28	1.99
50930995--50931058	31	2.1	31	93	0	110	37	15	23	23	1.93
50931822--50932004	88	2.1	88	97	0	348	39	33	2	23	1.69
50934127--50934297	93	1.8	93	96	0	315	28	29	21	21	1.98
50934122--50934294	46	3.7	46	80	13	219	28	28	21	21	1.98
50934717--50934776	30	2.0	30	90	0	93	30	25	8	36	1.85
50950305--50950416	43	2.6	42	85	2	161	29	16	24	29	1.97
50956697--50956810	43	2.7	42	83	2	156	28	20	24	27	1.99
50965693--50965760	20	3.4	20	82	8	84	5	27	25	41	1.78
50968923--50969236	46	6.7	46	71	14	169	29	20	27	22	1.99
50968923--50969270	138	2.5	137	81	7	366	28	20	27	23	1.99
50974357--50974490	43	2.9	46	82	11	166	20	18	30	30	1.96
50974486--50974530	20	2.1	22	88	12	67	37	4	20	37	1.73
50983267--50983329	30	2.1	30	91	5	101	25	3	12	58	1.49
50983451--50983481	11	2.8	11	90	0	53	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50986171--50986223	22	2.3	23	78	15	58	49	0	0	50	1.00
50994620--50994657	18	2.1	18	85	9	51	39	0	2	57	1.12
50994616--50994670	28	1.9	29	85	10	78	38	0	3	58	1.16
50995160--50995193	11	3.2	11	91	4	52	70	0	0	29	0.87
51003361--51003461	29	3.6	29	83	10	120	28	15	26	28	1.96
51013632--51013684	23	2.3	21	82	17	70	47	16	26	9	1.77
51013790--51013827	18	2.1	19	90	5	60	28	15	36	18	1.92
51013907--51014010	29	3.6	29	74	8	79	25	14	32	26	1.95
51014749--51015048	47	6.4	47	95	0	519	31	8	31	29	1.87
51024079--51024263	79	2.3	81	84	7	236	24	22	27	25	2.00
51024080--51024263	40	4.6	40	83	9	216	24	22	27	25	2.00
51024132--51024296	79	2.1	79	84	6	210	26	21	27	25	1.99
51027037--51027069	16	2.1	16	94	0	57	54	30	0	15	1.41
51028309--51028356	24	2.0	23	92	4	78	43	14	27	14	1.84
51028302--51028352	16	3.2	16	74	0	57	47	17	23	11	1.81
51032994--51033539	278	2.0	266	93	4	930	34	8	18	39	1.81
51034089--51034464	94	4.0	94	98	0	707	30	10	19	39	1.85
51034493--51034556	24	2.7	24	87	4	85	20	15	31	32	1.94
51050806--51050845	19	2.0	20	85	4	55	40	12	22	25	1.89
51053516--51053567	22	2.4	21	80	3	59	17	32	32	17	1.93
51055830--51055889	30	2.0	30	93	0	102	56	13	3	26	1.52
51055929--51055968	11	3.6	11	82	0	53	60	10	10	20	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51058229--51058356	45	2.9	45	81	4	129	31	25	18	25	1.98
51058261--51058393	45	3.0	46	81	4	146	32	24	16	27	1.96
51062606--51062673	33	2.1	33	97	0	127	23	26	22	27	1.99
51067730--51067787	29	2.0	29	100	0	116	27	13	10	48	1.75
51068226--51068277	26	2.0	26	96	0	95	36	17	15	30	1.91
51071272--51071365	43	2.2	43	90	0	143	18	25	37	19	1.94
51075427--51075580	43	3.7	43	84	6	190	27	16	25	29	1.97
51077109--51077136	13	2.2	13	100	0	56	28	28	17	25	1.98
51083702--51083879	27	6.6	27	84	3	205	29	28	15	26	1.96
51083723--51083878	82	1.9	81	88	3	233	29	28	15	26	1.96
51091765--51091942	27	6.6	27	84	3	205	29	28	15	26	1.96
51091786--51091941	82	1.9	81	88	3	233	29	28	15	26	1.96
51096723--51096949	46	4.9	47	75	14	177	28	19	29	22	1.98
51096677--51096896	46	4.8	44	74	12	151	27	19	29	23	1.98
51101268--51101650	40	9.6	40	82	7	415	25	27	22	24	2.00
51101268--51101651	119	3.2	119	90	3	551	26	27	22	24	2.00
51109437--51109660	79	2.8	78	84	6	281	25	27	22	25	2.00
51109437--51109660	40	5.7	40	88	6	289	25	27	22	25	2.00
51112625--51112809	79	2.3	81	84	7	236	25	27	22	24	2.00
51112625--51112809	40	4.7	40	83	7	234	25	27	22	24	2.00
51114344--51114471	61	2.1	61	97	0	238	21	8	24	46	1.79
51119565--51119686	43	2.9	41	75	7	127	28	22	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51121645--51121692	21	2.3	21	86	10	64	22	33	33	10	1.88
51123094--51123175	14	5.7	14	68	18	53	45	0	3	51	1.19
51123013--51123225	62	3.5	61	76	15	237	41	0	4	53	1.27
51122990--51123241	120	2.1	117	87	8	361	42	1	4	51	1.29
51131637--51131673	14	2.6	15	87	12	60	59	0	40	0	0.97
51131955--51131990	15	2.4	15	90	0	63	38	0	11	50	1.38
51132628--51132902	149	1.8	150	90	2	446	46	5	9	38	1.59
51133296--51133331	15	2.4	15	90	0	63	38	0	11	50	1.38
51133969--51134243	149	1.8	150	90	2	446	46	5	9	38	1.59
51134416--51134487	17	4.4	17	73	16	64	55	1	2	40	1.23
51134437--51134501	33	2.0	33	81	6	78	52	1	4	41	1.31
51136771--51136809	12	3.2	12	85	0	51	82	12	0	5	0.83
51137651--51137690	21	2.0	20	90	5	62	35	0	22	42	1.54
51137656--51137698	21	2.1	21	83	12	54	32	2	20	44	1.65
51139511--51139677	43	3.9	44	80	4	189	26	16	25	31	1.96
51149582--51149725	40	3.7	40	75	13	129	22	26	26	24	2.00
51151236--51151278	19	2.3	19	84	11	54	23	6	0	69	1.12
51154149--51154188	21	2.0	20	85	5	53	35	0	20	45	1.51
51162150--51162238	6	14.7	6	89	5	135	69	14	0	15	1.19
51164628--51164674	20	2.3	20	85	7	60	36	8	23	31	1.85
51164724--51164820	27	3.8	26	89	6	137	26	20	23	28	1.99
51166686--51166870	40	4.7	40	78	6	180	25	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51166739--51166893	79	2.0	79	81	7	181	27	20	27	25	1.99
51168803--51168898	48	2.0	48	93	0	165	22	31	21	23	1.99
51174990--51175172	40	4.6	40	80	6	194	24	21	28	26	1.99
51175041--51175205	79	2.1	79	80	6	183	26	20	27	26	1.99
51186553--51187459	46	19.7	46	96	1	1674	30	28	19	21	1.98
51191040--51191143	53	2.0	53	94	0	181	16	20	47	16	1.83
51195385--51195477	47	2.0	46	91	0	141	34	18	11	34	1.87
51208885--51209004	59	2.0	59	95	0	213	32	20	15	32	1.93
51215417--51215575	43	3.7	43	71	16	134	25	18	26	29	1.98
51216398--51216464	35	1.9	35	87	6	100	29	16	31	22	1.96
51229192--51229343	43	3.5	43	78	13	145	24	19	25	30	1.98
51230930--51231044	39	2.9	40	86	2	160	31	25	20	23	1.98
51238928--51239059	40	3.3	40	89	3	196	30	25	21	22	1.99
51242722--51242849	35	3.5	35	74	12	114	32	24	11	32	1.91
51250656--51250762	20	5.3	20	94	2	180	35	10	19	34	1.86
51250678--51250754	9	7.9	9	72	16	64	35	9	20	35	1.85
51250811--51250871	25	2.4	26	76	15	65	31	22	21	24	1.98
51251080--51251181	31	3.1	31	74	17	96	39	16	21	22	1.92
51251097--51251195	38	2.6	39	92	6	168	41	15	19	24	1.89
51256164--51256190	14	1.9	14	100	0	54	88	3	7	0	0.61
51257270--51258214	40	23.6	40	97	1	1718	24	20	27	27	1.99
51261532--51261587	11	5.5	11	75	16	66	35	10	19	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51261530--51261587	20	2.9	20	100	0	116	34	10	20	34	1.87
51261637--51261698	26	2.4	26	100	0	124	29	24	24	22	1.99
51266390--51266479	23	3.8	24	83	7	103	24	23	20	32	1.98
51266390--51266497	23	4.5	23	78	14	96	25	23	20	31	1.98
51271574--51271652	37	2.1	37	88	0	113	25	30	18	25	1.98
51271771--51272055	47	6.1	47	90	0	428	28	30	9	31	1.88
51275483--51275621	40	3.5	38	76	7	125	24	26	23	25	2.00
51275931--51276009	29	2.7	29	86	5	106	27	32	15	24	1.95
51277434--51277534	50	2.0	50	98	0	193	19	22	28	28	1.98
51277953--51278031	37	2.1	37	90	0	122	25	31	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284