genome.fa.s9.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  153  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51278150--51278448	47	6.4	47	93	0	463	28	30	10	30	1.90
51278385--51278522	74	1.9	74	90	0	222	30	31	7	30	1.86
51278291--51278616	168	1.9	168	94	0	580	30	31	9	29	1.88
51278338--51278569	121	1.9	121	92	0	392	30	31	8	30	1.87
51278459--51278685	47	4.8	47	96	0	382	29	32	8	29	1.87
51278235--51278776	215	2.5	214	91	2	868	29	30	9	30	1.89
51278201--51278776	262	2.2	266	91	2	948	29	30	9	30	1.88
51278655--51278720	32	2.1	32	100	0	132	31	27	6	34	1.81
51278608--51278764	79	2.0	79	93	0	269	30	29	8	31	1.86
51279002--51279522	274	1.9	274	95	0	943	32	17	10	39	1.85
51279480--51279565	43	2.0	43	97	0	163	31	11	4	52	1.58
51279488--51279557	21	3.3	21	64	4	59	34	11	4	50	1.58
51279496--51279564	21	3.2	21	65	4	57	31	8	5	53	1.55
51281359--51281438	37	2.1	38	88	6	119	20	27	25	27	1.99
51282556--51282694	40	3.5	37	76	11	116	25	26	22	25	2.00
51282776--51282877	28	3.6	27	77	7	114	30	27	18	23	1.98
51283092--51283164	29	2.5	29	88	4	103	26	31	16	26	1.96
51283226--51283314	40	2.2	40	95	0	160	29	28	21	21	1.98
51286343--51286514	79	2.2	79	84	3	220	25	21	27	25	1.99
51286290--51286512	40	5.6	39	81	8	209	25	21	27	25	1.99
51286370--51286547	79	2.2	80	80	3	191	25	21	28	24	1.99
51294257--51294427	81	2.1	81	96	0	315	34	22	4	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51294277--51294445	81	2.0	80	88	3	212	34	23	4	37	1.76
51294598--51294831	50	4.8	50	70	9	171	26	23	20	29	1.99
51295386--51295436	25	2.0	25	92	0	84	29	19	3	47	1.68
51300636--51300680	22	2.0	22	100	0	90	35	17	0	46	1.49
51306623--51306663	20	2.0	20	85	4	55	31	24	17	26	1.97
51306832--51307002	46	3.7	46	75	17	149	23	27	19	29	1.98
51310376--51310585	28	7.5	28	95	1	350	27	11	27	33	1.92
51317791--51317957	46	3.6	45	79	10	185	21	28	20	29	1.98
51323562--51323595	17	1.9	17	88	5	50	14	5	14	64	1.46
51324490--51324517	14	2.0	14	100	0	56	28	21	7	42	1.79
51334761--51335023	40	6.6	40	87	3	309	26	28	20	23	1.99
51341606--51341793	40	4.7	40	95	0	322	22	26	20	30	1.98
51348182--51348213	16	2.0	16	100	0	64	50	25	6	18	1.70
51352909--51352940	16	2.0	16	100	0	64	50	25	6	18	1.70
51355484--51355519	17	2.1	17	100	0	72	22	0	36	41	1.54
51359653--51359825	85	2.0	85	96	0	319	38	17	15	28	1.90
51363599--51363769	93	1.8	93	93	0	297	28	28	21	21	1.98
51363594--51363766	46	3.7	46	79	10	208	29	27	20	21	1.98
51364189--51364248	30	2.0	30	86	0	84	33	25	5	36	1.78
51372039--51372113	37	2.0	37	100	0	150	25	18	29	26	1.98
51372208--51372618	47	8.7	47	97	0	750	29	30	8	32	1.86
51374804--51375067	85	3.1	85	97	0	510	26	26	8	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51378318--51378489	93	1.8	93	91	0	281	27	29	21	21	1.99
51378310--51378485	46	3.8	46	78	10	187	28	28	21	21	1.98
51386395--51386446	21	2.5	21	93	3	88	28	40	17	13	1.87
51386712--51386751	16	2.5	15	88	8	53	0	12	5	82	0.82
51386893--51386925	15	2.1	16	88	5	50	27	9	9	54	1.62
51390637--51390817	24	7.4	24	89	4	247	27	20	20	30	1.98
51390637--51390817	98	1.9	97	89	5	285	27	20	20	30	1.98
51390863--51390929	20	3.3	20	89	0	98	31	20	11	35	1.89
51395787--51395865	39	2.0	39	97	0	149	25	29	10	35	1.88
51398913--51399062	50	3.0	50	90	3	234	27	19	20	32	1.97
51398907--51399062	24	6.4	24	88	5	224	26	20	20	32	1.97
51399112--51399178	20	3.3	20	91	0	107	31	22	11	34	1.90
51401547--51401634	7	12.0	7	86	4	86	17	0	34	48	1.47
51401578--51401619	8	5.2	8	94	0	66	11	0	28	59	1.33
51401564--51401619	16	3.6	16	88	4	80	12	0	32	55	1.37
51404930--51404977	26	1.9	24	87	8	69	29	0	6	64	1.18
51406592--51406692	41	2.6	39	81	6	123	39	3	8	47	1.53
51420883--51420994	51	2.2	51	98	1	215	40	23	1	34	1.65
51438855--51438880	12	2.2	12	100	0	52	23	0	0	76	0.78
51440734--51441029	153	1.9	154	84	3	400	35	13	19	32	1.90
51444160--51444324	56	2.9	56	82	8	192	54	7	4	32	1.50
51446220--51446258	18	2.2	18	86	9	53	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51446196--51446260	31	2.1	32	85	8	89	66	1	1	30	1.10
51449111--51449430	46	6.8	46	73	14	205	28	20	28	22	1.98
51449300--51449429	47	2.7	45	78	12	136	27	20	30	22	1.98
51449167--51449430	97	2.8	94	77	13	285	29	20	28	21	1.98
51450520--51450559	21	2.0	21	90	5	64	10	37	30	22	1.87
51457073--51457142	27	2.6	26	95	2	95	31	28	12	27	1.93
51457073--51457170	28	3.5	28	90	2	135	31	28	13	26	1.94
51463337--51463500	42	3.9	42	81	6	188	31	15	25	28	1.95
51463337--51463500	85	1.9	84	82	3	204	31	15	25	28	1.95
51472596--51472688	20	4.7	20	74	6	82	40	15	27	16	1.88
51472590--51472699	20	5.5	20	73	8	80	40	15	27	17	1.89
51479797--51479846	19	2.7	19	87	3	75	36	0	2	62	1.07
51482944--51483012	33	2.2	33	82	7	81	75	7	14	2	1.13
51487162--51487186	3	8.3	3	100	0	50	68	0	0	32	0.90
51488673--51488953	95	2.9	97	77	7	266	29	18	28	23	1.98
51488633--51488994	50	7.5	49	76	7	244	29	18	27	24	1.98
51494585--51494639	23	2.4	23	76	11	58	60	0	10	29	1.31
51494707--51495042	3	111.0	3	70	11	170	58	2	8	31	1.38
51496082--51496161	38	2.1	37	90	2	124	13	1	41	43	1.52
51496713--51496832	64	1.9	64	91	0	195	31	20	18	29	1.96
51496771--51497071	75	4.0	75	86	3	370	31	19	16	32	1.94
51497983--51498036	26	2.1	26	92	0	90	25	31	9	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51510088--51510305	95	2.3	94	79	13	205	30	16	28	24	1.97
51509944--51510305	50	7.5	49	75	7	237	30	16	27	25	1.97
51515696--51515837	3	47.0	3	65	9	56	60	2	7	29	1.36
51516009--51516135	3	41.0	3	69	13	62	59	2	8	29	1.40
51515992--51516108	28	4.2	29	71	13	77	63	2	8	25	1.36
51516188--51516292	18	5.7	18	68	19	56	60	1	8	28	1.36
51516227--51516299	15	4.4	15	70	21	56	64	2	8	24	1.35
51516191--51516297	56	2.0	52	82	10	126	59	1	9	28	1.39
51516267--51516315	22	2.2	22	85	0	71	69	0	4	26	1.06
51517369--51517448	38	2.1	37	88	2	115	12	1	40	46	1.50
51518422--51518464	21	2.0	21	86	0	59	25	16	27	30	1.97
51519984--51520074	42	2.2	42	80	4	103	20	35	23	20	1.96
51533228--51533493	28	9.5	28	94	1	428	25	12	28	33	1.92
51543965--51544116	27	5.6	27	93	3	241	26	13	28	30	1.94
51543965--51544116	55	2.8	55	94	0	259	26	13	28	30	1.94
51563840--51563883	18	2.4	18	78	14	54	40	15	13	29	1.86
51565563--51566111	292	1.9	292	100	0	1098	32	16	24	26	1.96
51573680--51573851	79	2.2	79	84	3	220	25	21	27	25	1.99
51573627--51573849	40	5.6	39	81	8	209	25	21	27	25	1.99
51573707--51573884	79	2.2	80	80	3	191	25	21	28	24	1.99
51584710--51584914	41	5.0	41	92	1	313	17	20	23	37	1.94
51584721--51584943	123	1.8	123	83	3	297	18	20	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51588975--51588999	13	1.9	13	100	0	50	88	4	8	0	0.64
51590078--51590341	40	6.7	40	87	6	310	25	21	27	25	2.00
51590079--51590374	80	3.7	77	81	10	280	26	21	27	25	1.99
51593207--51593326	29	4.2	29	78	4	118	30	27	13	29	1.94
51593238--51593326	30	3.1	30	83	4	112	29	26	14	29	1.95
51594493--51594581	29	3.1	29	88	7	137	28	26	14	30	1.95
51598834--51598922	41	2.2	41	91	0	142	46	6	6	40	1.57
51601094--51601197	50	2.1	50	98	0	199	42	7	19	30	1.79
51607464--51607631	49	3.5	49	79	5	157	24	29	17	27	1.97
51614567--51614600	18	1.9	18	88	5	52	32	14	14	38	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284