genome.fa.s9.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  189  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63925277--63925379	31	3.5	29	76	16	97	59	3	2	33	1.31
63925342--63925448	41	2.7	40	78	12	112	61	4	2	30	1.30
63925949--63925973	10	2.5	10	100	0	50	40	0	0	60	0.97
63925960--63926028	19	3.9	17	75	18	54	31	0	4	63	1.14
63925973--63926096	9	13.0	9	70	17	56	29	0	5	63	1.23
63925996--63926048	19	2.7	19	85	8	63	33	1	3	60	1.26
63925987--63926040	27	2.0	27	85	7	74	31	0	5	62	1.18
63930363--63930421	31	1.9	30	82	6	73	45	10	10	33	1.72
63931149--63931178	14	2.1	14	100	0	60	43	13	13	30	1.82
63933303--63933347	20	2.2	21	88	11	67	28	0	6	64	1.19
63935025--63935060	15	2.5	14	86	8	54	44	8	0	47	1.33
63936309--63936367	17	3.4	18	77	13	61	74	3	3	18	1.10
63938587--63938644	29	2.0	29	89	0	89	41	22	17	18	1.90
63940221--63940256	15	2.5	14	86	8	54	44	8	0	47	1.33
63941689--63941730	19	2.2	19	83	8	50	38	4	0	57	1.20
63949847--63949962	57	2.0	58	83	5	146	43	6	22	28	1.77
63954460--63954503	19	2.4	17	85	14	61	29	2	0	68	1.02
63954693--63954735	17	2.5	17	85	7	52	32	0	4	62	1.15
63954688--63954735	20	2.4	20	78	0	60	31	0	4	64	1.12
63958657--63959030	41	8.6	41	76	16	324	29	19	25	24	1.98
63958770--63958817	22	2.2	22	100	0	96	31	14	31	22	1.94
63958731--63958855	63	2.0	63	95	0	223	29	19	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63958657--63958937	145	1.9	145	93	0	481	29	19	26	24	1.98
63958794--63959030	82	2.9	82	92	1	386	30	19	25	24	1.98
63958794--63959030	123	1.9	123	91	0	384	30	19	25	24	1.98
63961320--63961355	17	2.1	17	89	0	54	61	5	5	27	1.41
63961340--63961368	14	2.0	15	93	6	51	62	0	3	34	1.12
63964491--63964561	23	3.2	23	66	22	69	40	7	33	18	1.77
63964474--63964561	44	2.0	44	100	0	176	40	6	34	18	1.77
63966458--63966506	24	2.1	23	81	7	55	59	0	0	40	0.98
63966573--63966606	17	1.9	17	88	5	50	41	0	0	58	0.98
63966565--63966613	18	2.8	17	79	14	55	36	0	4	59	1.17
63967190--63967330	34	4.1	34	73	13	110	44	9	11	34	1.74
63967244--63967434	18	10.7	17	73	15	120	45	10	10	33	1.74
63967180--63967329	69	2.1	71	83	7	182	44	10	12	33	1.75
63967335--63967377	20	2.1	21	86	4	61	39	9	4	46	1.57
63967391--63967445	17	3.3	17	74	18	53	38	9	12	40	1.75
63967387--63967446	18	3.6	16	73	8	57	38	8	13	40	1.75
63967946--63968006	11	5.7	10	78	14	59	0	18	0	81	0.68
63967947--63968008	15	4.4	14	84	8	81	0	16	0	83	0.64
63967947--63968008	21	2.8	22	81	13	83	0	16	0	83	0.64
63973880--63974054	30	5.9	30	78	11	157	42	5	17	34	1.71
63973879--63974053	89	2.0	88	88	1	260	43	5	17	34	1.71
63973904--63974054	59	2.6	60	83	5	175	43	4	17	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63974616--63974658	18	2.4	18	88	7	61	53	0	0	46	1.00
63975095--63975132	7	5.4	7	96	0	67	10	28	0	60	1.30
63989394--63989440	23	2.0	24	84	12	62	10	14	0	74	1.07
63990148--63990181	5	6.8	5	100	0	68	38	0	0	61	0.96
63993298--63993339	18	2.3	18	88	8	59	38	7	2	52	1.42
63998205--63998266	10	6.4	10	78	9	58	80	3	16	0	0.83
63998205--63998275	30	2.4	30	84	9	85	80	2	15	1	0.90
63998205--63998255	19	2.7	19	84	0	66	82	3	13	0	0.81
63998608--63998806	108	1.9	106	82	4	256	24	18	11	45	1.82
63999686--64000396	46	15.1	46	77	10	564	27	14	24	33	1.95
63999705--64000392	92	7.3	92	81	6	768	26	14	24	33	1.94
63999705--64000396	138	4.9	139	80	7	782	26	14	24	33	1.94
63999981--64000013	17	1.9	17	100	0	66	18	27	12	42	1.85
63999933--64000056	63	2.0	63	85	6	171	26	18	20	34	1.95
63999887--64000104	109	2.0	109	93	1	375	26	16	22	34	1.95
63999704--64000286	293	2.0	293	90	0	925	27	14	24	33	1.94
64000460--64000570	44	2.5	43	81	8	116	26	18	23	31	1.98
64000727--64000855	42	3.0	43	76	11	120	32	17	22	27	1.96
64002661--64002772	56	2.0	55	81	10	127	33	6	5	54	1.48
64002816--64002855	16	2.5	16	88	8	55	37	7	2	52	1.43
64002816--64002878	18	3.6	17	78	4	56	36	9	3	50	1.51
64003679--64003894	29	7.3	29	80	4	218	35	19	3	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64003679--64003882	59	3.5	59	88	0	284	34	19	3	42	1.70
64004228--64004296	3	21.3	3	75	16	50	68	0	31	0	0.90
64004228--64004297	10	7.1	10	76	9	63	68	0	31	0	0.90
64004534--64004578	18	2.4	17	82	17	54	80	0	20	0	0.72
64004744--64004792	21	2.3	20	83	10	62	36	2	0	61	1.08
64004974--64005433	18	25.9	17	70	18	244	31	11	10	46	1.74
64004912--64005434	35	14.5	36	72	13	156	31	12	10	46	1.74
64005051--64005257	53	3.9	51	76	9	191	30	9	8	51	1.64
64011525--64012351	78	10.7	78	84	5	1002	27	17	19	35	1.94
64011525--64012351	229	3.6	233	83	5	932	27	17	19	35	1.94
64011529--64012351	307	2.7	307	91	2	1312	27	17	19	35	1.94
64012597--64012741	59	2.5	59	88	1	220	35	17	3	44	1.66
64012597--64012758	29	5.5	30	78	6	161	35	17	3	43	1.67
64013096--64013162	18	3.8	18	82	7	84	68	1	29	0	0.98
64013267--64013304	18	2.1	18	90	0	58	78	5	13	2	1.02
64013435--64013499	10	7.0	10	80	16	70	80	0	20	0	0.72
64013448--64013498	7	7.1	7	78	8	50	82	0	17	0	0.67
64013435--64013499	23	2.9	22	81	9	69	80	0	20	0	0.72
64013665--64013708	22	2.0	22	86	4	63	36	2	0	61	1.09
64013819--64014348	18	29.5	18	70	17	252	31	11	9	46	1.73
64013844--64014346	17	28.2	16	69	18	157	31	11	9	47	1.73
64013823--64014429	35	17.0	36	71	17	193	31	11	9	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64014181--64014368	73	2.6	73	78	8	179	33	12	10	43	1.77
64016292--64016343	19	2.7	20	76	5	63	36	0	3	59	1.16
64018097--64018135	13	3.1	13	85	14	55	43	2	0	53	1.14
64026430--64026464	17	2.1	17	89	10	54	25	2	0	71	1.00
64031132--64031203	21	3.0	24	76	19	71	41	0	1	56	1.07
64031494--64031553	31	1.9	31	86	0	84	26	15	13	45	1.83
64036031--64036055	13	1.9	13	100	0	50	44	32	8	16	1.76
64038228--64038272	22	2.1	21	91	4	72	11	17	26	44	1.82
64038343--64038547	42	4.8	43	84	5	256	27	32	18	22	1.97
64038820--64038910	43	2.1	43	87	2	130	43	9	10	35	1.73
64048090--64048185	41	2.3	41	92	0	165	28	29	25	17	1.98
64048240--64048372	40	3.3	41	79	7	141	24	22	20	32	1.98
64048361--64048386	12	2.2	12	100	0	52	46	30	15	7	1.74
64048907--64048975	24	2.8	26	78	8	72	42	18	17	21	1.90
64049153--64049214	24	2.7	23	82	2	61	27	17	29	25	1.98
64049539--64049568	10	2.8	11	90	10	53	36	26	0	36	1.57
64057124--64057167	22	2.0	22	95	0	79	27	18	29	25	1.98
64066159--64066318	87	1.9	84	82	3	203	30	21	22	25	1.99
64066164--64066539	170	2.2	171	85	7	503	30	20	22	27	1.98
64066164--64066622	44	10.6	44	70	13	228	29	21	22	26	1.99
64066511--64066672	87	1.9	87	84	2	218	29	20	24	25	1.99
64066335--64066752	218	1.9	214	81	6	477	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64066823--64066914	44	2.1	44	83	0	112	28	19	26	26	1.99
64069090--64069303	107	2.0	107	99	0	419	35	18	13	33	1.89
64069451--64069710	130	2.0	130	99	0	511	28	22	15	34	1.94
64076382--64076450	29	2.4	28	85	7	86	42	0	2	55	1.15
64076411--64076463	28	1.9	28	84	3	72	41	1	0	56	1.10
64084563--64084608	20	2.3	20	92	0	74	36	15	0	47	1.45
64084571--64084613	20	2.2	20	91	0	68	34	18	2	44	1.63
64084579--64084622	20	2.2	20	87	0	61	36	13	4	45	1.64
64090450--64090493	14	2.8	16	80	16	56	54	0	0	45	0.99
64091390--64091434	23	2.0	23	95	0	81	42	20	8	28	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284