genome.fa.s9.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  108  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35429389--35429493	53	2.0	53	98	0	201	32	12	23	31	1.92
35429865--35429968	52	2.0	52	92	0	172	19	8	24	48	1.77
35430286--35430401	58	2.0	58	94	0	205	31	21	16	31	1.95
35433801--35433895	46	2.1	46	88	4	138	32	14	25	27	1.95
35433805--35433912	46	2.3	46	84	3	137	32	15	23	28	1.95
35436417--35436460	19	2.2	20	88	4	63	47	2	13	36	1.56
35439616--35439845	40	5.8	40	88	3	299	23	21	26	28	1.99
35439616--35439845	119	1.9	119	85	5	322	23	21	26	28	1.99
35449119--35449145	12	2.2	12	100	0	54	40	0	7	51	1.30
35461404--35461591	40	4.7	40	79	4	193	23	27	22	26	2.00
35461415--35461593	80	2.2	80	90	1	279	24	27	21	26	1.99
35467290--35467320	14	2.1	15	94	5	55	22	0	19	58	1.40
35470865--35471016	40	3.8	40	86	2	189	26	27	21	24	1.99
35480046--35480099	27	2.0	27	82	3	65	37	20	20	22	1.95
35480084--35480147	27	2.4	27	86	2	85	25	21	20	32	1.97
35481854--35481991	47	2.9	49	77	13	164	29	27	19	23	1.98
35482414--35482473	30	2.0	30	83	0	75	31	23	8	36	1.84
35489392--35489562	93	1.8	93	91	0	279	28	26	21	23	1.99
35489387--35489559	46	3.7	46	73	13	174	28	25	21	24	1.99
35490145--35490250	53	2.0	53	96	0	194	25	21	13	39	1.90
35492554--35492592	19	2.1	19	95	0	69	28	17	15	38	1.91
35493497--35493593	29	3.4	28	74	16	74	35	20	13	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35493572--35493637	29	2.3	29	83	0	78	50	22	7	19	1.73
35495689--35495734	23	2.0	23	95	0	83	34	4	19	41	1.71
35497604--35497707	29	3.6	28	73	8	102	27	16	32	23	1.96
35500119--35500247	40	3.2	40	81	6	129	24	17	23	34	1.95
35500147--35500287	40	3.5	40	76	5	142	21	17	25	36	1.94
35503069--35503139	36	2.0	36	91	0	115	38	23	12	25	1.90
35511239--35511346	27	4.0	26	83	8	117	37	21	22	19	1.95
35512762--35512821	24	2.5	24	88	0	84	21	41	1	35	1.63
35519050--35519159	27	4.2	26	85	8	141	36	22	24	16	1.94
35519050--35519159	52	2.1	54	87	3	161	36	22	24	16	1.94
35520572--35520671	24	4.2	24	89	1	148	18	42	5	35	1.72
35522363--35522616	83	3.1	83	97	0	472	34	19	15	30	1.93
35531575--35531614	20	2.1	19	90	4	62	35	7	10	47	1.65
35532717--35532751	13	2.8	12	83	8	52	60	14	0	25	1.35
35537680--35537909	50	4.6	51	78	12	219	24	17	27	30	1.97
35537676--35537915	101	2.4	96	86	5	302	25	17	27	30	1.98
35543921--35543981	30	2.0	30	87	0	86	37	8	24	29	1.84
35544014--35544044	15	2.1	15	100	0	62	64	0	6	29	1.18
35547968--35548005	19	2.0	20	89	5	60	26	34	0	39	1.57
35551834--35552009	9	20.0	9	70	15	75	46	18	1	33	1.57
35551817--35551949	52	2.6	52	92	2	214	49	15	0	34	1.45
35551917--35551992	36	2.1	36	92	0	125	46	18	1	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35557095--35557123	14	2.1	14	93	6	51	37	0	6	55	1.27
35557534--35557585	21	2.5	22	81	6	63	34	21	44	0	1.52
35557687--35557756	21	3.3	21	78	4	70	35	21	41	1	1.62
35558152--35558245	43	2.2	43	92	0	152	28	28	17	25	1.97
35559695--35559957	40	6.6	39	86	4	278	25	27	21	25	1.99
35559695--35559957	120	2.2	119	82	4	307	25	27	21	25	1.99
35559889--35559966	40	1.9	41	82	10	97	26	28	20	24	1.99
35567640--35567982	40	8.6	40	88	3	424	26	27	20	25	1.99
35567914--35567991	40	1.9	41	82	10	97	26	28	20	24	1.99
35570190--35570287	42	2.3	43	84	3	128	33	23	17	25	1.96
35575943--35575975	12	2.8	12	86	13	50	9	33	36	21	1.85
35579923--35580008	42	2.0	42	88	0	127	30	13	25	30	1.94
35587479--35587633	42	3.7	42	77	0	157	29	18	25	26	1.98
35596558--35596638	34	2.4	34	75	8	85	29	22	18	29	1.97
35598245--35598350	24	4.4	24	90	1	149	19	37	5	36	1.76
35612352--35612379	13	2.2	13	100	0	56	14	21	25	39	1.91
35616508--35616563	27	2.1	27	89	0	85	30	17	19	32	1.95
35616545--35616695	27	5.6	27	88	3	189	39	23	7	29	1.83
35616569--35616724	27	5.8	27	88	4	165	40	25	7	26	1.82
35616565--35616740	81	2.2	81	81	6	205	40	23	7	28	1.81
35616596--35616740	54	2.7	54	81	4	141	42	24	6	27	1.78
35616755--35616843	27	3.3	27	90	0	142	38	22	10	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35616828--35617009	27	6.7	27	88	0	247	33	21	19	25	1.97
35616755--35616870	54	2.1	54	82	3	144	36	23	12	27	1.91
35616646--35616870	121	1.9	119	79	7	249	36	24	10	28	1.89
35617417--35617481	22	3.0	22	80	8	78	20	26	23	30	1.98
35617640--35617723	27	3.1	27	86	6	116	15	22	25	36	1.93
35617649--35617740	27	3.4	26	85	5	76	20	26	18	34	1.96
35617878--35617970	6	15.3	6	72	18	77	18	15	16	50	1.78
35617878--35617949	30	2.4	31	88	4	110	18	15	16	50	1.79
35618922--35619000	6	12.5	6	77	15	61	12	2	6	78	1.04
35618921--35618974	5	10.0	5	82	11	54	14	3	3	77	1.04
35619066--35619158	46	2.0	46	95	0	168	17	16	5	61	1.52
35626724--35626764	20	2.0	20	85	0	55	36	29	2	31	1.71
35626850--35626971	43	2.9	42	86	7	176	31	26	15	27	1.96
35629862--35629931	31	2.3	31	97	0	131	12	30	37	20	1.90
35629880--35629944	31	2.1	31	85	0	85	13	33	30	21	1.92
35634392--35634576	79	2.3	81	85	7	245	23	22	27	25	2.00
35634393--35634576	40	4.6	40	84	9	225	23	22	27	25	2.00
35634445--35634609	79	2.1	79	85	6	219	25	21	27	26	1.99
35640786--35641048	40	6.6	40	87	3	309	26	28	20	23	1.99
35646864--35646958	41	2.3	41	90	3	147	21	20	27	31	1.97
35651981--35652246	47	5.7	46	77	10	209	27	16	30	24	1.97
35652419--35652580	55	2.9	55	100	0	324	32	9	17	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35655922--35656186	40	6.7	40	85	5	286	26	27	21	24	1.99
35655889--35656186	80	3.7	80	79	9	263	25	27	21	25	1.99
35656118--35656195	40	1.9	41	82	10	97	26	28	20	24	1.99
35661447--35661472	12	2.2	12	100	0	52	53	7	0	38	1.30
35668582--35668645	31	2.1	31	93	0	110	37	15	23	23	1.93
35670516--35670681	43	3.9	42	74	10	138	31	27	17	23	1.97
35671913--35671938	12	2.2	12	100	0	52	30	15	38	15	1.88
35672602--35672867	50	5.3	50	86	1	336	30	12	17	39	1.87
35680161--35680280	48	2.5	48	86	2	161	25	18	30	26	1.98
35682874--35682917	23	1.9	23	95	0	79	22	27	27	22	1.99
35682780--35683008	119	1.9	119	85	3	318	27	20	27	25	1.99
35687954--35687980	13	2.1	13	100	0	54	14	33	37	14	1.88
35689510--35689562	26	2.0	26	92	0	88	37	3	28	30	1.75
35691915--35692286	48	7.8	48	75	4	286	27	18	27	26	1.98
35691905--35692286	96	4.0	96	78	2	365	26	18	27	27	1.98
35691970--35692236	144	1.9	144	91	0	435	26	16	27	28	1.97
35691970--35692292	144	2.2	144	86	0	430	26	18	27	27	1.98
35692579--35692647	22	3.3	22	61	19	56	26	4	23	46	1.71
35692562--35692647	41	2.1	41	95	0	154	29	4	22	44	1.73
35693670--35693709	21	1.9	21	89	0	62	12	42	27	17	1.85
35695298--35695325	14	2.0	14	100	0	56	35	14	7	42	1.73
35695768--35695807	16	2.5	16	95	0	71	22	15	2	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35723334--35723584	40	6.3	40	85	2	301	24	22	26	26	2.00
35723334--35723593	80	3.3	80	84	3	337	25	22	26	26	2.00
35728809--35728890	42	2.0	42	85	0	110	31	23	10	34	1.89
35735187--35735410	40	5.6	39	85	6	236	25	20	27	25	1.99
35735148--35735412	80	3.3	80	82	5	254	24	20	27	26	1.99
35735148--35735410	120	2.2	120	82	4	309	25	20	27	26	1.99
35735187--35735445	80	3.3	80	81	4	231	26	20	27	25	1.99
35743095--35743357	40	6.6	40	88	3	316	24	20	28	26	1.99
35743134--35743392	80	3.3	80	84	3	247	25	20	28	25	1.99
35748679--35748986	46	6.7	46	96	0	526	21	21	27	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284