genome.fa.s2.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  110  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35691213--35691245	15	2.2	15	100	0	66	57	18	12	12	1.64
35691217--35691261	15	2.9	16	87	6	58	64	15	8	11	1.49
35694268--35694461	50	3.9	49	81	6	212	27	28	19	24	1.98
35694279--35694465	101	1.9	99	86	4	268	27	29	18	24	1.98
35702027--35702182	27	5.8	27	77	7	147	40	22	8	28	1.83
35702019--35702213	54	3.6	54	76	6	187	38	22	8	31	1.83
35702540--35702602	6	10.3	6	74	16	58	17	19	14	49	1.80
35702515--35702581	25	2.7	25	92	0	107	19	23	11	44	1.84
35702484--35702581	31	3.4	30	73	16	98	20	21	12	45	1.83
35709240--35709317	21	3.7	21	74	19	65	28	24	32	15	1.95
35712321--35712483	85	1.9	85	83	5	213	27	18	24	29	1.98
35722262--35722293	16	2.1	15	94	5	55	50	28	18	3	1.62
35722541--35722633	28	3.3	28	92	3	152	34	26	7	31	1.84
35722739--35722828	28	3.2	27	85	7	119	20	24	23	32	1.98
35722739--35722853	55	2.1	56	83	8	146	19	24	21	34	1.96
35723292--35723330	19	2.1	19	85	0	51	15	5	7	71	1.26
35733181--35733228	11	4.6	11	80	12	57	35	12	18	33	1.89
35733540--35733652	31	3.7	30	84	6	140	31	17	24	25	1.97
35738578--35738750	27	6.4	27	86	2	195	26	21	17	34	1.96
35738580--35738750	54	3.2	54	85	0	225	26	21	16	35	1.95
35745443--35745496	27	2.0	27	85	3	74	35	20	22	22	1.96
35745497--35745669	27	6.4	27	87	0	211	27	21	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35746001--35746125	65	1.9	65	95	0	223	35	25	16	22	1.95
35751312--35751569	40	6.5	40	90	3	405	25	27	22	24	2.00
35755833--35755964	50	2.6	51	84	6	187	37	12	14	35	1.83
35757903--35757951	21	2.4	21	86	3	73	8	18	0	73	1.07
35757886--35757951	20	2.9	24	73	19	68	10	21	0	68	1.19
35758595--35758743	39	3.8	39	89	0	210	37	9	8	44	1.68
35758595--35758743	77	1.9	78	86	1	210	37	9	8	44	1.68
35758595--35758760	39	4.3	39	86	3	174	36	9	9	44	1.70
35758595--35758760	78	2.1	77	83	3	199	36	9	9	44	1.70
35758595--35758781	78	2.4	77	81	4	189	36	10	8	44	1.69
35760741--35760810	27	2.5	28	95	2	124	31	28	12	27	1.93
35768741--35768839	27	3.5	28	90	2	137	31	28	13	27	1.94
35768742--35768839	28	3.5	28	90	2	117	31	28	13	26	1.94
35772853--35772972	50	2.4	51	78	4	143	41	11	12	34	1.79
35776925--35777010	28	3.0	28	79	3	91	26	30	13	29	1.95
35781412--35781522	58	1.9	58	85	1	152	27	30	16	26	1.96
35781415--35781522	29	3.8	29	82	6	121	26	29	16	26	1.97
35786817--35786876	27	2.3	26	85	2	75	36	21	21	20	1.95
35786915--35786966	27	2.0	26	84	3	68	34	21	26	17	1.95
35789699--35789781	27	3.0	28	82	5	89	39	20	18	21	1.92
35793623--35793813	45	4.3	45	86	2	242	23	22	28	26	1.99
35793624--35793828	90	2.3	90	87	3	281	22	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35795906--35796027	22	5.3	22	62	21	61	25	29	11	33	1.91
35795878--35796134	47	5.4	47	89	3	365	26	30	9	33	1.88
35805112--35805258	47	3.1	47	81	6	170	30	9	32	27	1.88
35805377--35805455	37	2.1	37	90	0	122	24	18	31	25	1.98
35806825--35807028	50	4.1	50	81	3	250	30	25	18	25	1.98
35809311--35809349	15	2.5	15	91	4	60	56	15	12	15	1.68
35817976--35818150	45	4.0	45	87	3	223	23	21	28	26	1.99
35818889--35818971	34	2.4	35	85	2	114	27	20	24	27	1.99
35824134--35824281	22	6.5	23	85	4	185	25	21	18	35	1.96
35837442--35837550	54	2.0	54	96	0	200	27	21	16	34	1.94
35838839--35839189	47	7.4	47	93	1	567	28	30	8	32	1.87
35845230--35845550	40	8.1	40	90	0	482	24	28	22	24	2.00
35845604--35845678	38	2.0	38	86	5	107	24	26	18	30	1.98
35847764--35848270	49	10.6	49	95	3	860	29	29	8	32	1.86
35847764--35848270	145	3.5	143	95	3	862	29	29	8	32	1.86
35851568--35851773	40	5.2	40	91	0	324	29	26	21	22	1.99
35861826--35861876	20	2.5	21	73	20	54	35	15	13	35	1.87
35868277--35868688	54	7.8	54	75	11	334	25	23	15	35	1.94
35868343--35868634	155	1.9	156	83	7	380	25	23	14	36	1.93
35868289--35868735	209	2.1	209	92	0	734	25	23	14	35	1.94
35871886--35872137	67	3.9	64	78	9	226	29	17	29	23	1.97
35875361--35875432	27	2.7	27	82	0	90	29	11	22	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35875722--35875812	29	3.2	29	84	6	116	28	31	14	25	1.94
35876791--35876817	4	6.8	4	100	0	54	77	0	0	22	0.76
35879359--35879495	27	5.1	27	70	1	87	37	20	9	32	1.85
35879477--35879536	27	2.2	27	90	0	93	41	11	13	33	1.80
35880304--35880370	32	2.1	32	81	10	75	13	20	25	40	1.89
35880316--35880380	32	2.0	33	88	5	98	13	16	26	43	1.86
35884619--35884745	39	3.3	39	87	3	168	35	7	11	45	1.69
35891464--35891733	135	2.0	137	94	2	481	35	9	21	33	1.86
35891786--35892034	125	2.0	125	97	0	471	37	11	17	33	1.86
35892191--35892681	247	2.0	245	97	0	937	34	13	17	34	1.89
35892733--35893268	47	11.4	47	81	7	404	30	10	31	27	1.91
35892759--35893252	94	5.3	95	80	8	501	30	11	31	26	1.92
35892759--35893247	141	3.5	140	77	10	534	30	11	31	26	1.92
35894072--35894265	47	4.1	47	91	0	298	32	10	29	26	1.90
35894101--35894172	22	3.1	22	64	24	58	33	13	29	23	1.93
35894146--35894221	23	3.2	25	62	24	63	28	13	34	23	1.92
35894235--35894417	48	3.8	48	96	0	339	36	6	26	31	1.81
35894564--35894708	37	3.9	37	93	0	236	24	19	30	26	1.98
35901731--35901819	45	2.0	44	97	0	160	33	16	13	34	1.88
35907058--35907120	26	2.4	26	83	2	72	15	23	4	55	1.59
35907126--35907169	15	3.0	14	77	9	52	2	18	2	77	0.98
35909127--35909252	46	2.7	46	83	4	146	27	8	14	49	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35909127--35909281	47	3.3	46	78	5	150	29	9	14	47	1.75
35916618--35916669	21	2.5	21	96	0	95	46	11	15	26	1.80
35920591--35920716	42	2.9	43	79	12	116	23	19	24	32	1.97
35926557--35926734	27	6.6	27	83	3	205	26	15	28	29	1.96
35926558--35926713	82	1.9	81	88	3	233	26	15	28	29	1.96
35926554--35926734	82	2.2	81	83	2	229	27	15	27	29	1.96
35939854--35940002	41	3.5	43	76	10	126	25	18	26	28	1.98
35942016--35942060	21	2.1	21	84	8	56	31	35	13	20	1.91
35954589--35954663	31	2.5	30	83	10	91	22	25	21	30	1.99
35954884--35954953	25	2.8	25	95	0	122	25	22	25	25	2.00
35954999--35955037	10	3.8	10	86	6	60	30	15	17	35	1.91
35954999--35955038	21	1.9	21	94	0	71	30	15	17	37	1.90
35960370--35960547	27	6.6	27	84	3	205	29	28	15	26	1.96
35960391--35960546	82	1.9	81	88	3	233	29	28	15	26	1.96
35966086--35966155	25	2.8	25	95	0	122	25	22	25	25	2.00
35966201--35966239	10	3.8	10	86	6	60	30	15	17	35	1.91
35966201--35966240	21	1.9	21	94	0	71	30	15	17	37	1.90
35967515--35967768	127	2.0	128	96	0	474	23	36	7	32	1.84
35971396--35971513	47	2.5	47	80	5	123	32	11	31	25	1.90
35984215--35984266	18	2.7	20	82	8	72	25	13	15	46	1.82
35984462--35985073	306	2.0	306	99	0	1215	42	19	10	27	1.84
35985793--35985904	28	4.0	28	77	4	109	25	29	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35986747--35987322	286	2.0	286	99	0	1143	30	22	16	30	1.96
35993832--35993886	26	2.2	24	72	12	56	38	18	20	23	1.93
36001929--36001988	27	2.3	26	82	2	66	21	23	20	35	1.96
36008972--36009297	163	2.0	163	99	0	643	26	7	25	40	1.82
36011035--36011208	56	3.1	56	100	0	348	22	22	9	45	1.80
36017046--36017263	40	5.5	40	82	4	219	27	26	20	26	1.99
36017046--36017263	79	2.7	80	83	5	255	27	26	20	26	1.99
36017048--36017263	119	1.8	120	81	7	269	26	26	20	26	1.99
36025247--36025306	28	2.1	29	81	9	70	26	25	1	46	1.62
36032265--36032452	49	3.8	49	79	4	216	29	26	17	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322