Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  136  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44433666--44433690
3
8.3
3
100
0
50
68
0
32
0
0.90
44434698--44434765
22
3.4
20
76
19
79
61
0
0
38
0.96
44434697--44434772
22
3.9
19
77
17
75
61
0
0
38
0.96
44434691--44434782
39
2.4
39
74
15
95
58
0
0
41
0.98
44438014--44438054
15
2.7
15
81
11
57
29
19
17
34
1.94
44447282--44447354
18
4.1
18
85
0
92
41
19
5
34
1.74
44447282--44447354
36
2.0
36
89
0
110
41
19
5
34
1.74
44456475--44456582
26
4.2
26
91
0
180
36
23
7
33
1.83
44462116--44462188
37
2.0
37
94
0
128
23
21
28
26
1.99
44468701--44468786
43
2.0
43
100
0
172
34
30
4
30
1.78
44472199--44472247
21
2.3
21
83
13
57
14
0
8
77
0.98
44472198--44472238
14
2.9
14
88
0
55
12
0
9
78
0.98
44472400--44472654
133
1.9
132
89
0
368
28
22
18
30
1.97
44472496--44473049
176
3.1
177
87
3
805
27
24
18
28
1.98
44473160--44473409
64
4.0
64
88
3
350
38
14
16
30
1.89
44474479--44474548
9
8.1
8
80
14
59
7
8
0
84
0.78
44474499--44474548
8
6.5
8
80
17
52
10
4
0
86
0.71
44474496--44474555
13
4.2
13
76
16
57
10
3
1
85
0.79
44474496--44474555
22
2.8
21
85
9
77
10
3
1
85
0.79
44479657--44479690
17
1.9
18
94
5
61
70
0
2
26
1.01
44481635--44481683
14
3.4
14
80
5
53
14
0
12
73
1.10
44481636--44481676
22
1.9
21
85
14
57
12
0
12
75
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44501809--44501855
24
2.0
24
86
0
67
34
8
25
31
1.86
44505182--44505799
44
14.1
44
70
14
266
29
24
15
30
1.96
44505211--44505625
176
2.4
176
90
0
652
30
25
15
28
1.96
44505398--44505756
132
2.8
132
86
2
494
29
24
15
29
1.96
44505695--44505799
43
2.4
43
96
0
192
30
20
14
34
1.93
44513651--44513703
14
3.7
14
77
20
56
43
13
22
20
1.86
44517436--44517507
23
3.1
23
80
4
83
62
1
4
31
1.23
44517495--44517560
24
2.6
25
76
19
66
57
0
7
34
1.27
44519135--44519171
19
1.9
19
88
0
56
54
18
5
21
1.64
44520941--44521003
32
2.0
32
90
0
99
31
4
22
41
1.74
44529340--44529445
43
2.5
43
88
0
167
26
30
19
23
1.98
44531591--44531616
13
2.0
13
100
0
52
30
0
23
46
1.53
44532955--44533061
44
2.4
46
81
6
121
27
14
24
34
1.93
44533000--44533099
46
2.3
43
82
8
112
25
16
24
35
1.95
44538390--44538452
30
2.1
29
94
2
108
33
25
17
23
1.96
44541086--44541130
21
2.1
21
92
8
74
4
0
53
42
1.21
44563208--44563260
20
2.6
21
76
5
56
41
1
0
56
1.10
44563214--44563272
31
2.0
30
83
9
77
40
1
0
57
1.09
44563719--44563766
19
2.6
18
93
3
78
64
2
0
33
1.05
44563933--44564009
18
4.3
18
72
6
57
28
10
16
44
1.81
44563933--44564009
27
2.9
27
75
7
75
28
10
16
44
1.81
44573064--44573283
48
4.6
48
80
0
233
22
28
21
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44573060--44573291
96
2.4
96
86
0
311
21
28
21
28
1.98
44573063--44573377
144
2.2
143
79
5
332
22
28
20
27
1.99
44573112--44573377
96
2.8
96
79
3
257
22
28
20
28
1.98
44573063--44573377
48
6.6
48
78
5
226
22
28
20
27
1.99
44575268--44575314
22
2.1
22
100
0
94
42
8
17
31
1.79
44577407--44577442
18
2.1
17
89
5
54
33
13
16
36
1.89
44584197--44584357
84
1.9
84
93
0
277
47
11
7
33
1.68
44588019--44588338
46
6.8
48
76
9
268
27
19
30
22
1.98
44591753--44591777
11
2.3
11
100
0
50
56
8
0
36
1.29
44591755--44591804
15
3.2
16
76
20
52
52
14
0
34
1.42
44591782--44591828
24
2.0
24
84
16
62
51
17
0
31
1.46
44592484--44592553
11
6.2
11
74
12
61
2
18
2
75
1.05
44592598--44592649
13
4.0
13
76
16
54
42
1
0
55
1.10
44594585--44594628
22
2.0
22
81
0
52
56
2
0
40
1.11
44598569--44598739
46
3.7
45
80
6
182
24
27
18
29
1.98
44598568--44598739
94
1.8
92
84
7
231
24
27
18
30
1.98
44600558--44600645
34
2.6
34
82
12
94
56
4
4
34
1.40
44600937--44600972
15
2.3
16
90
4
56
55
0
11
33
1.35
44601877--44601922
25
1.9
23
86
8
65
73
2
17
6
1.14
44603163--44603347
40
4.7
40
80
6
198
23
21
27
27
1.99
44603200--44603380
79
2.3
78
77
9
179
26
18
26
28
1.98
44609914--44609962
25
2.0
24
88
4
71
73
2
16
8
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44611204--44611388
40
4.7
40
82
7
209
23
22
28
25
1.99
44611259--44611411
79
1.9
79
84
7
204
25
20
28
26
1.99
44613710--44613809
44
2.2
45
82
5
114
29
23
21
27
1.99
44613814--44614337
176
3.0
176
82
2
629
27
26
17
28
1.98
44615541--44615583
16
2.7
16
75
13
52
16
4
0
79
0.90
44627606--44627641
15
2.3
16
90
4
56
55
0
11
33
1.35
44629815--44629935
25
4.9
24
73
8
100
28
23
19
28
1.98
44631369--44631399
16
1.9
16
100
0
62
29
6
12
51
1.65
44634780--44635138
46
7.7
46
77
12
385
23
20
26
28
1.99
44634777--44635133
93
3.8
93
98
0
678
23
20
27
28
1.99
44637209--44637331
28
4.4
28
92
2
185
26
12
27
33
1.92
44650849--44650910
30
2.1
30
100
0
124
25
16
22
35
1.94
44653045--44653194
55
2.8
54
80
4
149
26
15
29
28
1.96
44653017--44653194
27
6.6
27
77
6
146
25
15
28
30
1.96
44653018--44653173
82
1.9
81
81
6
190
25
16
28
30
1.96
44661693--44661916
40
5.6
40
83
8
285
26
26
22
25
2.00
44661693--44661916
83
2.8
80
85
6
285
26
26
22
25
2.00
44670397--44670437
21
2.0
21
90
9
66
46
0
24
29
1.53
44678501--44678567
28
2.4
28
92
2
118
40
0
4
55
1.20
44679010--44679070
20
3.1
19
86
6
86
67
3
0
29
1.07
44685634--44685688
7
7.9
7
89
0
56
27
25
0
47
1.52
44685631--44685657
14
1.9
14
100
0
54
22
14
0
62
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44685648--44685687
21
1.9
21
89
0
62
30
30
0
40
1.57
44685712--44685760
20
2.5
20
100
0
98
16
14
0
69
1.19
44690396--44690635
67
3.6
68
80
3
263
35
18
23
23
1.96
44694306--44694478
64
2.7
64
78
7
179
26
30
15
27
1.96
44694694--44694755
29
2.1
29
96
0
115
43
24
1
30
1.64
44698815--44698858
22
2.0
22
90
0
70
25
9
4
61
1.45
44700487--44700627
57
2.4
58
78
3
142
31
21
16
31
1.95
44704983--44705031
22
2.2
22
100
0
98
20
32
34
12
1.90
44711616--44711724
57
1.9
58
86
1
157
35
22
11
29
1.90
44715171--44715200
12
2.5
12
100
0
60
16
43
26
13
1.85
44721206--44721257
23
2.3
22
83
6
68
7
21
0
71
1.11
44723591--44723655
29
2.4
27
82
7
69
33
7
4
53
1.50
44726657--44726704
23
2.1
23
92
3
80
18
14
8
58
1.61
44729755--44729789
17
2.0
18
88
5
54
22
5
0
71
1.07
44731439--44731716
92
3.0
92
75
8
246
33
16
23
27
1.95
44736146--44736208
27
2.3
26
76
10
63
50
11
0
38
1.38
44736175--44736204
15
2.0
15
93
0
51
40
10
0
50
1.36
44737581--44737661
34
2.4
34
77
8
83
28
24
22
24
1.99
44746063--44746094
15
2.2
14
94
5
55
31
0
0
68
0.90
44746848--44746899
20
2.6
20
87
0
77
1
26
19
51
1.57
44746801--44746887
15
5.4
15
68
17
50
5
22
18
52
1.66
44748463--44748727
26
10.2
26
78
8
216
41
26
16
15
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44748448--44748727
52
5.4
52
80
6
271
40
27
16
15
1.89
44748463--44748727
78
3.4
75
80
5
244
41
26
16
15
1.88
44749333--44749370
16
2.3
17
82
17
53
31
15
2
50
1.58
44751186--44751231
19
2.4
18
82
10
56
58
0
0
41
0.98
44753548--44753619
36
2.0
36
100
0
144
33
11
30
25
1.90
44755578--44755626
21
2.4
20
80
10
55
8
20
24
46
1.77
44759251--44759383
67
2.0
67
95
0
239
24
16
30
29
1.96
44760195--44760257
32
2.0
32
100
0
126
25
3
22
49
1.65
44763310--44763380
34
2.1
34
97
0
133
28
1
15
54
1.49
44763319--44763395
34
2.3
33
82
8
102
28
1
15
54
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322