Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  225  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74415778--74415819
20
2.1
20
95
0
75
14
30
28
26
1.95
74419911--74419943
17
1.9
17
100
0
66
48
0
9
42
1.35
74427969--74427999
6
5.2
6
100
0
62
35
0
32
32
1.58
74430533--74430603
36
2.0
36
91
0
115
50
22
14
12
1.76
74443311--74443383
12
6.1
12
70
17
53
13
23
1
61
1.40
74443424--74443470
21
2.1
23
84
7
62
14
14
2
68
1.31
74445628--74445672
20
2.2
20
85
14
58
53
13
4
28
1.59
74447602--74447707
48
2.2
48
85
9
137
14
24
1
59
1.45
74447683--74447767
18
4.6
17
71
16
62
17
28
2
51
1.58
74457768--74457819
22
2.5
21
81
12
54
53
3
7
34
1.48
74466249--74466273
13
1.9
13
100
0
50
16
32
20
32
1.94
74481138--74481181
20
2.2
20
95
0
79
20
31
29
18
1.96
74485343--74485706
47
7.6
48
73
13
290
25
29
17
26
1.97
74485443--74485709
94
2.8
93
89
7
371
24
29
17
27
1.98
74488830--74488903
27
2.9
25
72
7
76
28
20
25
25
1.99
74492524--74492574
19
2.7
19
87
6
68
50
5
17
25
1.68
74505842--74505980
29
4.9
29
82
4
151
25
32
14
28
1.94
74510449--74510565
29
4.0
29
84
4
128
27
29
13
29
1.94
74510784--74510826
16
2.7
16
81
0
50
16
18
13
51
1.77
74512078--74512109
16
2.0
16
93
0
55
9
6
34
50
1.60
74512757--74512808
17
2.7
19
77
17
63
40
19
15
25
1.90
74528139--74528177
8
5.1
8
84
9
55
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74528139--74528237
3
31.7
3
71
23
55
62
1
4
32
1.20
74528131--74528258
10
12.3
10
70
20
68
60
2
4
32
1.30
74528199--74528239
7
5.7
7
86
13
57
58
0
0
41
0.98
74528196--74528234
17
2.4
17
95
4
71
58
0
0
41
0.98
74528201--74528251
21
2.5
21
87
9
70
58
1
1
37
1.20
74529874--74530406
44
12.1
44
86
3
671
27
28
15
29
1.96
74541000--74541035
7
5.0
7
86
6
54
69
0
0
30
0.89
74541000--74541097
17
6.3
15
78
15
94
63
1
4
31
1.20
74541061--74541103
21
2.1
20
86
4
59
60
2
0
37
1.10
74541072--74541111
21
1.9
21
89
0
62
60
2
2
35
1.24
74545737--74545786
20
2.4
21
87
9
68
62
2
0
36
1.07
74545750--74545821
10
7.5
10
69
7
51
58
1
2
37
1.21
74547162--74547208
24
1.9
25
86
4
69
46
2
2
48
1.25
74547166--74547232
30
2.2
30
79
12
75
50
2
1
44
1.26
74547402--74547454
13
4.1
12
80
9
52
33
26
7
32
1.84
74551894--74551927
6
5.5
6
86
6
50
0
17
0
82
0.67
74551894--74551927
13
2.7
13
90
4
52
0
17
0
82
0.67
74573097--74573306
91
2.3
90
80
6
246
30
25
12
31
1.92
74574341--74574373
17
1.9
17
88
11
50
69
0
0
30
0.88
74574341--74574374
18
1.9
17
88
5
50
70
0
0
29
0.87
74574630--74574724
18
4.7
21
82
12
74
40
16
6
36
1.74
74574630--74574687
22
2.6
22
84
7
73
43
17
3
36
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74574666--74574739
19
3.9
19
94
3
132
36
16
9
37
1.81
74574659--74574739
37
2.2
38
89
8
132
35
17
8
38
1.80
74574669--74574748
37
2.2
37
86
6
119
38
13
11
36
1.81
74574858--74574896
21
1.9
20
84
5
51
10
2
15
71
1.23
74575291--74575505
78
2.8
78
92
0
349
24
23
20
32
1.98
74582787--74582816
6
5.0
6
91
0
51
53
16
13
16
1.73
74583171--74583246
22
3.7
21
76
15
68
40
17
6
35
1.75
74583200--74583297
35
2.7
37
87
12
150
35
16
10
37
1.82
74583207--74583297
19
4.9
19
92
8
161
36
15
10
37
1.83
74583406--74583449
16
2.8
16
82
0
61
9
6
15
68
1.38
74584765--74584794
15
2.0
15
93
0
51
73
0
3
23
0.98
74584780--74584890
10
11.4
10
71
8
68
63
0
0
36
1.01
74584788--74584885
29
3.3
29
69
17
78
60
0
1
38
1.04
74584785--74584872
19
4.5
20
73
18
87
59
0
1
39
1.05
74584931--74584988
19
3.1
18
78
16
64
60
3
8
27
1.42
74584934--74584988
20
2.8
21
76
15
64
63
3
7
25
1.37
74585145--74585213
31
2.2
32
86
2
95
27
1
2
68
1.13
74585168--74585212
21
2.2
21
88
4
65
24
2
2
71
1.09
74586120--74586201
41
2.0
41
97
0
155
50
2
9
37
1.49
74591808--74591923
46
2.5
46
92
0
196
33
2
12
51
1.53
74595976--74596245
133
2.0
134
78
7
282
23
14
20
42
1.88
74603421--74603456
18
2.0
18
88
0
54
22
38
8
30
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74606726--74606766
21
2.0
21
90
0
64
26
41
7
24
1.81
74611372--74611412
21
2.0
21
90
0
64
26
41
7
24
1.81
74626945--74627115
93
1.8
93
96
0
315
27
29
22
21
1.99
74626940--74627112
46
3.7
46
80
13
219
28
28
21
21
1.99
74627535--74627594
30
2.0
30
90
0
93
30
25
8
36
1.85
74630856--74631135
48
5.8
48
90
0
425
28
18
25
27
1.98
74630856--74631229
96
4.0
96
80
9
409
29
18
25
27
1.98
74637558--74637633
21
3.6
21
73
3
64
19
10
38
31
1.86
74638154--74638202
11
4.5
11
89
0
62
4
8
6
81
0.97
74638153--74638195
11
3.9
11
90
0
68
2
9
6
81
0.95
74647499--74647529
16
1.9
16
93
0
53
35
22
0
41
1.54
74647496--74647535
20
2.0
20
85
0
53
37
22
0
40
1.54
74647721--74647972
55
4.7
54
81
5
257
21
24
18
36
1.95
74649539--74649612
28
2.6
29
91
2
123
28
31
14
25
1.95
74652799--74652829
16
1.9
16
93
0
53
35
16
6
41
1.74
74652991--74654070
43
24.8
43
75
11
819
30
26
16
26
1.97
74654675--74654724
25
2.0
25
100
0
100
36
20
0
44
1.52
74657771--74657808
20
1.9
20
94
0
67
28
21
21
28
1.98
74664047--74664133
43
2.0
43
82
12
108
27
29
19
22
1.98
74676393--74676437
23
2.0
22
83
12
56
31
4
17
46
1.68
74683148--74683174
14
1.9
14
100
0
54
14
3
22
59
1.51
74684043--74684077
11
3.0
11
84
15
52
51
28
8
11
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74685286--74685369
26
3.2
26
96
0
150
33
4
25
36
1.77
74698600--74698712
20
5.7
20
79
8
104
38
18
11
31
1.87
74698603--74698709
40
2.7
39
83
9
135
37
18
12
31
1.88
74698857--74698991
23
5.7
23
72
12
80
33
17
22
26
1.96
74698857--74698981
45
2.6
45
81
10
128
33
16
22
27
1.96
74701744--74701989
18
13.3
18
66
13
106
36
14
11
37
1.82
74702163--74702306
45
3.2
45
89
0
207
38
21
19
20
1.93
74702720--74702761
5
8.2
5
89
5
57
38
23
0
38
1.55
74703944--74704022
38
2.1
38
88
4
115
37
18
3
39
1.69
74704103--74704133
4
7.5
4
92
7
53
0
29
0
70
0.87
74704191--74704222
13
2.5
13
100
0
64
15
6
0
78
0.95
74718158--74718213
27
2.0
29
82
6
71
16
10
12
60
1.58
74718623--74718675
27
1.9
28
84
3
72
58
15
7
18
1.60
74726548--74726711
82
2.0
82
96
0
301
27
23
21
27
1.99
74734606--74734636
12
2.6
12
100
0
62
0
32
6
61
1.21
74735118--74735163
18
2.6
18
86
3
67
15
34
36
13
1.86
74737992--74738025
17
2.0
17
88
11
52
41
5
11
41
1.66
74739340--74739375
19
1.9
19
88
5
56
36
8
2
52
1.46
74740016--74740150
48
2.8
48
91
0
225
32
14
23
28
1.95
74740202--74740311
34
3.3
34
76
1
123
40
15
14
29
1.87
74742563--74742706
54
2.6
55
85
6
186
54
9
0
36
1.37
74759261--74759314
12
4.3
12
73
17
56
53
1
0
44
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74759243--74759290
20
2.4
19
76
10
51
56
2
0
41
1.11
74761507--74761566
26
2.3
26
88
2
86
30
8
11
50
1.68
74768077--74768294
46
4.7
46
75
13
144
22
29
18
28
1.98
74768077--74768294
94
2.4
90
81
7
233
22
29
18
28
1.98
74772113--74772273
46
3.5
44
80
8
119
29
19
28
22
1.98
74789226--74789408
79
2.3
81
83
7
223
24
27
22
24
2.00
74789205--74789408
40
5.1
40
81
8
229
24
27
22
25
2.00
74794080--74794130
16
3.2
16
97
0
93
27
5
19
47
1.73
74801699--74801867
90
1.9
90
81
0
203
28
19
23
28
1.98
74820533--74820591
28
2.1
28
96
0
109
49
16
0
33
1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322