genome.fa.s2.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  155  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50900478--50900555	29	2.8	28	75	11	70	53	12	11	21	1.70
50901880--50901921	16	2.5	17	84	7	59	33	11	11	42	1.78
50909162--50909196	15	2.2	16	90	5	54	65	0	22	11	1.24
50910246--50910293	23	2.1	23	100	0	96	54	4	12	29	1.56
50910633--50910686	28	1.9	28	96	0	99	44	9	18	27	1.80
50914522--50914566	13	3.4	13	81	3	54	62	11	6	20	1.50
50914750--50914783	17	1.9	17	88	5	50	17	35	29	17	1.93
50918875--50918913	18	2.1	19	86	13	55	20	17	10	51	1.74
50921649--50921826	27	6.6	27	84	3	205	29	28	15	26	1.96
50921670--50921825	82	1.9	81	88	3	233	29	28	15	26	1.96
50929839--50930016	27	6.6	27	84	3	205	29	28	15	26	1.96
50929860--50930015	82	1.9	81	88	3	233	29	28	15	26	1.96
50934240--50934292	26	2.0	26	81	7	61	60	22	15	1	1.44
50947337--50948032	175	4.0	177	80	5	668	26	23	25	24	2.00
50947337--50947994	262	2.5	257	86	2	879	25	23	25	24	2.00
50947337--50948032	87	8.0	87	78	6	594	26	23	25	24	2.00
50948032--50948217	44	4.2	44	84	2	248	27	23	23	25	2.00
50948032--50948217	88	2.1	88	90	0	300	27	23	23	25	2.00
50948687--50948728	21	2.0	21	82	13	52	73	4	16	4	1.17
50951828--50970675	47	401.0	47	99	0	37624	31	8	29	29	1.87
50970794--50970872	37	2.1	37	90	0	122	24	18	31	25	1.98
50972637--50972670	13	2.5	13	90	4	50	23	0	5	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50978549--50978740	40	4.8	40	90	1	235	27	27	20	24	1.99
50986757--50986919	39	4.1	39	87	5	213	26	26	19	27	1.99
50990895--50990936	19	2.1	20	82	8	50	64	7	7	21	1.43
50991384--50991434	13	3.8	13	81	5	57	60	13	5	19	1.53
50996414--50996438	11	2.3	11	100	0	50	68	0	12	20	1.21
51003221--51003297	38	2.0	38	97	0	145	25	19	20	33	1.96
51004803--51004849	20	2.3	20	82	7	60	27	29	17	25	1.97
51006371--51006436	12	5.1	12	71	16	51	80	3	13	3	0.95
51006372--51006433	11	5.8	10	74	20	54	80	3	12	3	0.95
51007480--51007526	15	3.1	15	84	9	60	70	0	17	12	1.17
51007556--51007631	12	6.3	12	68	17	50	61	1	25	11	1.38
51007579--51007612	15	2.3	15	89	0	50	67	0	29	2	1.05
51011841--51011895	15	3.8	14	80	7	65	74	1	21	1	1.01
51020419--51020445	14	1.9	14	100	0	54	29	14	22	33	1.94
51021486--51021532	23	2.1	23	84	7	62	51	12	4	31	1.59
51028272--51028310	20	1.9	21	89	5	62	23	28	12	35	1.91
51028700--51028725	13	2.0	13	100	0	52	46	0	7	46	1.31
51032445--51032891	49	9.3	49	92	3	721	32	8	29	29	1.87
51032424--51032891	96	4.9	96	92	3	721	32	8	29	29	1.87
51032445--51032891	145	3.1	145	94	0	772	32	8	29	29	1.87
51044006--51044048	3	14.3	3	100	0	86	32	0	0	67	0.91
51045362--51045560	50	3.9	50	84	4	227	27	21	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51045374--51045560	100	1.8	103	83	6	254	26	20	29	22	1.99
51049398--51049777	39	9.6	39	89	4	518	24	27	22	25	2.00
51064701--51064760	23	2.6	23	97	2	111	35	26	5	33	1.78
51066375--51066432	10	5.8	10	80	6	55	32	29	12	25	1.92
51066387--51066443	20	2.8	21	84	10	66	31	28	10	29	1.90
51066407--51066460	19	2.8	20	81	13	58	27	29	11	31	1.91
51066407--51066460	20	2.8	20	78	13	58	27	29	11	31	1.91
51069759--51069878	38	3.1	39	93	3	208	30	8	11	49	1.69
51070921--51070978	20	3.0	20	80	10	75	25	29	17	27	1.97
51072396--51072440	20	2.2	20	84	0	63	26	17	13	42	1.86
51073310--51073354	23	1.9	24	86	4	65	37	33	4	24	1.76
51073579--51073616	18	2.1	19	90	5	60	65	5	5	23	1.34
51075768--51075794	12	2.2	12	100	0	54	51	7	0	40	1.30
51076276--51076453	27	6.6	27	83	3	205	26	15	28	29	1.96
51076277--51076432	82	1.9	81	88	3	233	26	15	28	29	1.96
51076273--51076453	82	2.2	81	83	2	229	27	15	27	29	1.96
51093705--51093767	21	3.0	21	88	2	81	33	31	4	30	1.78
51101537--51101675	51	2.7	51	82	5	165	28	12	24	33	1.92
51118463--51118635	32	5.5	32	79	9	194	39	20	17	21	1.92
51118893--51119089	27	7.7	27	72	14	159	27	19	18	35	1.95
51118908--51119089	53	3.6	52	74	17	175	27	20	17	35	1.94
51119021--51119082	25	2.4	27	81	13	76	24	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51120938--51121006	10	6.9	10	69	12	52	30	15	27	26	1.96
51120930--51121006	20	3.9	19	83	5	91	31	16	27	24	1.97
51122776--51122805	15	1.9	16	93	6	53	6	23	0	70	1.11
51122827--51122935	45	2.4	45	81	7	114	13	24	0	60	1.39
51122905--51122973	6	11.5	6	81	9	61	11	17	2	68	1.32
51122909--51122973	24	2.7	25	83	4	71	10	16	3	69	1.30
51125426--51125482	20	2.9	19	84	7	78	29	15	29	24	1.96
51131049--51131097	20	2.6	19	90	6	73	4	20	2	73	1.10
51131007--51131084	26	3.1	24	76	8	68	7	21	2	67	1.28
51131049--51131097	19	2.6	18	81	15	55	4	20	2	73	1.10
51132992--51133169	27	6.6	27	83	3	205	26	15	28	29	1.96
51132993--51133148	82	1.9	81	88	3	233	26	15	28	29	1.96
51132989--51133169	82	2.2	81	83	2	229	27	15	27	29	1.96
51137685--51137722	15	2.6	15	83	4	51	31	5	5	57	1.43
51141581--51141618	10	3.8	10	83	13	51	26	15	28	28	1.96
51150788--51150906	50	2.3	50	84	8	143	34	15	13	36	1.87
51152092--51152264	86	2.0	86	95	0	310	16	17	20	46	1.84
51157559--51157624	29	2.4	27	80	12	80	54	9	12	24	1.66
51157559--51157626	26	2.4	28	83	9	86	52	8	11	26	1.67
51163723--51164556	416	2.0	416	100	0	1668	26	18	20	34	1.96
51172992--51173030	13	2.9	13	88	3	51	17	7	5	69	1.32
51175024--51175080	27	2.1	28	87	6	82	21	8	5	64	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51180605--51180637	13	2.5	13	100	0	66	81	0	6	12	0.85
51186168--51186230	21	3.0	21	88	2	81	33	31	4	30	1.78
51186602--51186627	11	2.4	11	100	0	52	19	11	7	61	1.53
51188070--51188108	20	2.0	20	89	0	60	17	23	2	56	1.53
51212999--51213070	33	2.1	35	85	10	105	40	8	12	38	1.73
51214085--51214363	139	2.0	139	100	0	558	27	14	18	38	1.90
51221266--51221305	20	2.0	20	85	9	55	20	7	5	67	1.34
51221445--51221505	26	2.3	27	78	13	65	22	1	1	73	1.01
51223218--51223351	66	2.0	67	86	4	191	31	28	16	23	1.96
51223420--51223563	58	2.5	58	83	0	171	23	22	20	33	1.97
51233404--51233472	34	2.0	34	100	0	138	42	2	28	26	1.70
51237471--51237553	39	2.1	39	82	8	98	66	6	1	26	1.22
51252964--51253014	24	2.1	24	82	7	59	62	5	7	23	1.44
51254337--51254375	20	2.0	20	89	0	60	2	0	46	51	1.14
51254951--51254988	18	2.2	18	86	9	53	68	0	7	23	1.16
51257882--51258002	30	4.0	30	90	0	197	27	46	3	23	1.68
51257887--51258046	60	2.7	60	87	3	207	27	46	3	22	1.69
51257887--51258046	30	5.3	30	81	4	137	27	46	3	22	1.69
51257882--51258046	90	1.8	90	80	5	199	26	46	3	23	1.69
51267605--51267642	17	2.3	16	86	8	58	84	0	15	0	0.63
51268516--51268762	91	2.7	91	96	1	453	27	17	20	33	1.96
51268678--51268835	73	2.1	74	83	2	210	29	17	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51268824--51268870	13	3.5	13	85	5	58	17	10	4	68	1.35
51268774--51269240	99	4.7	99	94	1	740	24	17	18	38	1.92
51269238--51269512	71	3.7	71	80	13	308	30	14	20	33	1.93
51269253--51269512	76	3.5	74	84	9	325	31	15	21	31	1.94
51269665--51269802	71	1.9	71	92	0	231	34	16	17	31	1.92
51269574--51269928	155	2.3	156	81	8	409	30	16	18	34	1.93
51269899--51270039	69	2.1	68	86	1	192	21	19	24	35	1.96
51269968--51270176	74	2.8	76	82	5	264	27	17	23	31	1.97
51270114--51270411	88	3.4	87	78	7	243	30	15	19	35	1.92
51270114--51270429	175	1.8	175	82	6	417	30	15	19	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322