Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  157  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51605076--51605145
24
2.9
24
79
8
88
34
28
12
24
1.92
51612760--51612821
24
2.6
24
86
0
88
30
33
11
24
1.90
51616698--51617509
145
5.7
145
85
6
1120
55
6
8
29
1.55
51617009--51617240
129
1.8
123
85
5
297
55
8
6
29
1.56
51617077--51617128
13
4.2
13
90
4
72
69
5
5
19
1.30
51616828--51617387
275
2.0
275
89
2
876
56
6
8
28
1.55
51616680--51617525
420
2.0
422
95
1
1518
56
6
8
28
1.55
51617607--51617676
27
2.6
27
90
0
113
17
34
28
20
1.95
51622389--51622413
12
2.1
12
100
0
50
16
0
0
84
0.63
51626835--51626859
12
2.1
12
100
0
50
16
0
0
84
0.63
51628715--51629027
166
1.9
166
80
5
364
41
12
6
39
1.68
51629295--51629333
18
2.2
18
90
0
60
84
0
10
5
0.76
51630466--51630503
19
2.0
19
94
0
67
31
23
10
34
1.89
51653315--51653355
6
6.8
6
97
0
64
17
78
0
4
0.93
51658260--51658313
21
2.6
20
80
8
72
38
7
9
44
1.65
51658292--51658386
17
5.6
17
79
7
113
46
13
9
30
1.75
51658291--51658404
34
3.4
34
84
3
142
44
14
9
31
1.77
51658291--51658412
17
7.4
17
78
7
99
43
13
9
34
1.75
51672030--51672075
3
15.0
3
82
13
58
0
36
0
63
0.95
51672044--51672072
10
2.9
10
100
0
58
0
37
0
62
0.96
51672030--51672075
13
3.7
13
81
18
62
0
36
0
63
0.95
51672135--51672175
19
2.3
19
84
12
52
0
31
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51672130--51672177
17
2.8
16
78
12
51
0
31
0
68
0.90
51672409--51672525
30
3.9
29
79
7
110
45
1
21
31
1.62
51672394--51672525
60
2.2
59
78
6
142
43
2
19
34
1.64
51672521--51672555
14
2.4
15
90
4
54
28
0
2
68
1.04
51674288--51674314
4
6.8
4
100
0
54
0
22
0
77
0.76
51675997--51676034
20
1.9
20
94
0
67
63
5
0
31
1.17
51684647--51684739
18
5.2
18
90
0
150
27
24
16
31
1.96
51692292--51692562
131
2.1
131
92
1
445
34
15
19
30
1.93
51696142--51696187
14
3.1
16
78
15
53
15
4
15
65
1.43
51701843--51701951
10
10.7
10
67
18
55
58
4
1
34
1.29
51702186--51702225
19
2.2
18
86
4
53
25
0
2
72
0.97
51703379--51703419
15
2.6
16
92
7
66
17
0
21
60
1.35
51703410--51703576
6
28.7
6
71
6
101
20
5
14
58
1.57
51703439--51703484
17
2.6
17
89
3
65
21
2
13
63
1.40
51703762--51703805
16
2.8
16
89
0
61
15
15
15
52
1.75
51711259--51711326
29
2.6
25
76
17
82
27
5
16
50
1.68
51711265--51711324
29
2.1
28
87
6
86
25
5
16
53
1.63
51712002--51712053
21
2.5
21
84
6
70
36
38
13
11
1.81
51712522--51712569
23
2.0
24
88
4
71
47
4
20
27
1.68
51714148--51714209
32
1.9
32
100
0
124
29
16
25
29
1.96
51721569--51721611
22
1.9
23
85
4
61
4
6
23
65
1.37
51725591--51725639
15
3.2
16
80
5
57
77
0
0
22
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51730313--51730338
12
2.2
12
100
0
52
38
38
15
7
1.76
51736947--51737002
26
2.1
27
81
15
64
28
8
7
55
1.57
51744089--51744135
22
2.0
24
92
8
80
34
0
6
59
1.23
51748378--51748447
23
3.0
23
80
2
86
28
14
15
41
1.86
51756466--51756530
30
2.2
30
97
0
121
44
3
16
35
1.64
51764671--51764726
28
2.0
28
100
0
112
53
10
10
25
1.67
51769991--51770032
22
1.9
22
95
0
75
47
14
21
16
1.82
51785023--51785066
22
2.0
22
86
0
61
52
0
0
47
1.00
51785086--51785127
13
2.9
14
80
13
50
54
0
0
45
0.99
51785090--51785126
16
2.3
16
86
13
58
59
0
0
40
0.97
51785156--51785215
15
3.7
15
73
16
57
48
0
3
48
1.18
51793022--51793075
22
2.5
22
78
6
56
64
1
0
33
1.04
51793510--51793541
15
2.1
15
100
0
64
46
6
6
40
1.54
51794271--51794309
21
1.9
20
84
5
51
51
2
0
46
1.14
51795803--51795831
15
1.9
15
100
0
58
0
10
0
89
0.48
51797267--51797304
19
2.0
19
90
10
60
47
5
0
47
1.24
51807174--51807201
3
9.3
3
100
0
56
67
0
32
0
0.91
51807269--51807294
6
4.3
6
100
0
52
50
0
34
15
1.45
51809043--51809080
16
2.4
16
95
0
67
15
13
15
55
1.70
51812107--51812160
26
2.1
26
83
13
67
61
3
5
29
1.36
51812479--51812529
27
1.9
27
88
4
77
54
7
3
33
1.47
51813276--51813363
44
2.0
44
100
0
176
22
18
31
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51814306--51814344
19
2.2
17
86
9
51
56
0
0
43
0.99
51815608--51815645
12
3.2
12
78
14
51
34
0
0
65
0.93
51815593--51815638
19
2.4
19
76
20
51
32
0
0
67
0.91
51820294--51820777
241
2.0
241
100
0
968
37
17
11
33
1.86
51823136--51823204
16
4.3
16
96
0
129
39
5
34
20
1.76
51823184--51823292
45
2.6
43
83
12
138
32
6
29
32
1.83
51823386--51823472
19
4.6
20
72
20
53
58
0
0
41
0.98
51823396--51823428
11
3.0
11
91
8
50
57
0
0
42
0.98
51823373--51823485
21
5.1
21
69
21
79
54
0
0
43
1.12
51823419--51823509
29
3.2
28
69
16
71
51
3
0
45
1.17
51823386--51823514
56
2.3
57
81
9
156
53
3
0
43
1.16
51823799--51823950
77
2.0
77
98
0
295
40
8
8
42
1.66
51826426--51826532
53
2.0
54
98
1
207
58
14
20
5
1.56
51826906--51826950
22
2.0
22
82
0
54
13
8
15
62
1.54
51830993--51831099
53
2.0
54
98
1
207
58
14
20
5
1.56
51834339--51834447
3
36.0
3
85
1
83
33
9
2
55
1.46
51840411--51840483
37
1.9
38
86
2
103
47
0
5
46
1.25
51840672--51840725
16
3.4
16
89
0
81
33
24
1
40
1.66
51849702--51849745
22
2.0
23
86
4
63
54
11
0
34
1.36
51849852--51849954
27
3.7
27
75
12
77
64
1
0
33
1.11
51849931--51850050
9
12.4
9
69
21
50
61
2
2
33
1.22
51849951--51850004
20
2.7
21
75
16
60
64
1
3
29
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51849960--51850034
21
3.7
21
79
15
77
64
2
4
29
1.26
51849939--51850042
40
2.7
40
85
4
124
62
1
2
32
1.21
51849931--51850050
19
6.2
19
71
15
77
61
2
2
33
1.22
51850177--51850218
19
2.2
19
86
0
57
30
0
2
66
1.04
51850177--51850222
10
4.7
10
81
5
58
32
0
2
65
1.05
51850429--51850492
27
2.3
28
91
5
103
35
0
1
62
1.05
51858800--51858856
26
2.2
26
77
0
60
45
3
3
47
1.37
51858597--51858892
155
1.9
151
79
10
328
42
2
9
45
1.50
51859294--51859329
18
2.0
18
100
0
72
22
11
0
66
1.22
51859294--51859325
10
3.4
10
83
16
50
21
12
0
65
1.25
51860773--51860804
12
2.7
12
90
0
55
25
18
0
56
1.42
51862849--51862878
15
1.9
16
93
6
53
26
3
3
66
1.23
51871096--51871261
83
2.0
83
100
0
332
27
15
22
33
1.95
51884903--51885282
192
2.0
191
93
1
645
30
14
17
37
1.89
51891162--51891327
35
4.6
35
82
8
172
31
10
24
33
1.90
51891162--51891332
75
2.4
75
85
7
221
31
11
23
33
1.90
51893286--51893332
7
7.1
7
76
13
55
53
0
0
46
1.00
51893286--51893332
12
3.7
12
83
11
58
53
0
0
46
1.00
51894200--51894233
15
2.2
16
90
10
54
76
14
2
5
1.09
51896626--51896879
131
1.9
132
87
2
368
30
18
16
33
1.94
51896626--51896967
131
2.6
131
81
3
341
29
19
17
34
1.94
51908490--51908614
65
1.9
65
91
0
205
32
16
12
38
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51908726--51909132
133
3.1
133
87
0
573
28
17
25
28
1.98
51911920--51912173
131
1.9
132
84
2
341
30
18
16
33
1.94
51911937--51912262
131
2.5
131
79
4
327
29
19
16
34
1.94
51913211--51913268
29
1.9
31
89
6
93
22
22
13
41
1.89
51913260--51913316
22
2.6
22
83
8
80
14
24
19
42
1.88
51913944--51914254
157
2.0
157
94
1
543
27
15
18
37
1.91
51915142--51915175
17
2.0
17
100
0
68
35
11
5
47
1.65
51916991--51917032
21
2.0
20
82
17
50
47
2
26
23
1.64
51936852--51936907
15
3.7
15
72
6
51
58
0
0
41
0.98
51937128--51937172
8
5.9
8
79
10
58
60
0
0
40
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322