genome.fa.s2.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  150  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49235486--49235650	79	2.1	79	82	6	192	27	21	26	25	1.99
49235553--49235887	168	2.0	168	98	0	643	30	18	22	28	1.97
49240122--49240162	18	2.3	18	95	0	73	14	41	34	9	1.79
49241081--49241340	46	5.6	47	76	15	215	26	18	29	25	1.98
49241124--49241342	94	2.4	92	82	8	266	26	17	29	27	1.97
49241124--49241374	44	5.5	44	80	9	256	25	17	29	27	1.97
49241081--49241374	140	2.1	139	85	7	388	26	18	29	26	1.98
49252131--49252300	52	3.4	51	90	4	247	27	30	13	28	1.94
49255674--49255774	45	2.2	45	87	6	143	22	11	29	35	1.90
49255750--49255886	44	2.9	44	82	8	148	20	16	29	34	1.94
49259674--49259710	19	2.0	18	94	5	65	48	10	10	29	1.72
49261934--49262142	55	3.9	53	77	8	215	33	17	25	23	1.96
49268354--49268401	21	2.3	21	96	0	87	31	22	35	10	1.88
49269678--49269886	55	3.9	54	81	6	217	34	17	24	23	1.95
49269686--49269886	108	1.8	110	86	4	291	34	17	24	23	1.96
49270852--49271010	27	5.9	27	81	11	175	34	21	24	19	1.96
49270870--49271013	54	2.7	54	92	2	236	34	22	24	18	1.96
49272608--49272715	26	4.2	26	92	0	180	36	23	8	32	1.84
49275928--49276109	51	3.6	50	80	4	195	28	28	13	29	1.94
49275939--49276100	52	3.2	52	85	10	196	29	28	12	29	1.93
49276078--49276151	34	2.2	34	97	0	139	29	24	16	29	1.96
49283442--49283480	15	2.4	17	83	8	55	66	10	5	17	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49286192--49286270	21	3.8	21	72	0	77	41	15	24	18	1.89
49286183--49286291	42	2.6	42	85	0	128	41	16	23	18	1.90
49288971--49289024	22	2.5	22	84	0	72	53	7	1	37	1.40
49292299--49292380	38	2.2	38	84	0	101	19	23	34	23	1.97
49312630--49312661	16	2.0	16	100	0	64	50	18	25	6	1.70
49316543--49316608	35	1.9	35	84	3	89	43	4	6	45	1.49
49322654--49322743	20	4.5	20	73	14	78	33	7	12	46	1.70
49322649--49322743	40	2.4	40	85	7	122	33	8	11	46	1.70
49325514--49325756	46	5.3	47	89	3	352	18	24	15	41	1.88
49328934--49329214	44	6.4	44	72	12	209	27	22	19	30	1.98
49328934--49329183	89	2.8	88	83	4	297	28	22	20	29	1.98
49328945--49329138	86	2.2	87	87	2	282	29	22	20	28	1.98
49329023--49329264	132	1.8	133	84	4	335	27	23	19	30	1.98
49340983--49341188	27	7.6	27	86	2	263	31	7	20	39	1.81
49341093--49341204	27	4.2	27	86	1	100	33	6	19	41	1.77
49344689--49344720	11	2.9	11	100	0	64	71	0	0	28	0.86
49344692--49344749	11	5.1	11	85	8	62	60	0	0	39	0.97
49344691--49344774	11	7.7	11	77	15	52	60	1	0	38	1.04
49349486--49349669	40	4.6	40	83	5	178	26	20	25	27	1.99
49349538--49349703	80	2.1	79	80	7	176	28	19	24	26	1.99
49353074--49353132	30	2.0	30	96	0	109	23	25	22	28	1.99
49361715--49361743	11	2.6	11	100	0	58	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49365277--49365315	19	2.0	20	85	5	53	56	0	0	43	0.99
49368911--49368948	18	2.1	18	95	0	67	42	47	2	7	1.46
49368925--49368949	13	1.9	13	100	0	50	40	48	0	12	1.40
49368974--49369020	6	7.5	6	86	9	58	76	6	0	17	0.98
49376738--49376794	28	2.0	28	83	6	71	8	21	38	31	1.84
49380411--49380624	101	2.1	101	90	1	331	30	26	14	29	1.95
49381580--49382191	139	4.4	139	86	1	854	42	21	7	29	1.79
49381505--49381777	91	2.9	92	75	13	297	41	21	6	30	1.79
49381534--49381685	48	3.2	48	92	1	245	40	23	5	29	1.78
49381858--49381957	48	2.1	47	86	3	103	40	26	7	27	1.81
49390019--49390103	13	6.5	13	71	18	52	32	17	2	47	1.61
49390024--49390097	26	2.8	27	78	10	73	35	18	2	43	1.65
49390023--49390149	40	3.2	39	80	6	130	33	17	1	47	1.57
49390245--49390349	40	2.6	40	87	1	138	33	17	2	46	1.62
49390264--49390324	13	4.6	13	72	11	52	37	16	3	42	1.64
49396906--49396961	8	7.0	8	83	0	76	46	16	28	8	1.77
49396902--49396961	24	2.5	24	94	0	102	48	15	28	8	1.73
49405149--49405204	26	2.2	26	96	0	103	30	5	26	37	1.79
49406792--49406986	27	7.2	27	81	12	231	18	25	21	33	1.96
49406789--49406983	54	3.6	54	95	1	338	18	26	21	33	1.96
49411541--49411648	26	4.2	26	93	0	189	32	7	24	36	1.83
49412827--49412856	8	3.8	8	90	0	51	43	26	26	3	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49413246--49413332	27	3.2	27	82	12	108	18	24	24	33	1.97
49413257--49413350	27	3.5	26	84	8	82	22	26	20	30	1.98
49414381--49414410	14	2.1	14	93	0	51	20	40	13	26	1.89
49414484--49414706	45	5.0	45	77	12	226	26	21	21	30	1.98
49414395--49414694	45	6.7	44	72	11	173	26	21	21	31	1.98
49414395--49414738	135	2.6	135	86	0	458	25	22	21	30	1.98
49414395--49414746	89	3.9	86	75	10	253	25	21	21	31	1.98
49414386--49414745	44	8.1	44	73	6	249	25	22	20	31	1.98
49417151--49417192	20	2.0	21	86	4	59	33	0	9	57	1.31
49417242--49417281	21	1.9	21	89	0	62	37	2	2	57	1.26
49417354--49417404	24	2.1	25	88	3	77	33	0	9	56	1.32
49421306--49421333	4	7.0	4	100	0	56	25	25	0	50	1.50
49428354--49428473	39	2.9	39	83	10	127	48	15	21	14	1.81
49429427--49430198	178	4.2	179	79	9	803	27	17	19	35	1.94
49429845--49430198	99	3.6	97	85	7	452	27	17	17	37	1.92
49430156--49430395	86	3.0	75	82	14	302	27	17	18	35	1.94
49430232--49430427	86	2.3	86	100	0	392	30	17	15	36	1.92
49431017--49431211	97	2.0	98	95	1	356	41	36	4	17	1.69
49432343--49432384	20	2.0	21	86	4	59	33	0	9	57	1.31
49432434--49432473	21	1.9	21	89	0	62	37	2	2	57	1.26
49432546--49432596	24	2.1	25	88	3	77	33	0	9	56	1.32
49440509--49440588	34	2.4	33	83	6	90	28	21	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49441417--49441472	28	2.0	28	96	0	103	55	3	0	41	1.17
49441501--49441559	23	2.4	25	86	10	79	54	1	1	42	1.20
49441556--49441611	22	2.6	21	75	5	58	41	1	5	51	1.35
49444994--49445052	29	2.1	27	87	6	82	30	1	3	64	1.20
49445474--49445537	31	2.0	34	87	9	98	57	1	6	34	1.33
49458138--49458164	11	2.5	11	100	0	54	51	0	0	48	1.00
49458149--49458197	19	2.6	19	83	6	55	61	0	0	38	0.96
49463369--49463476	26	4.2	26	93	0	189	32	7	24	36	1.83
49472095--49472306	46	4.6	47	79	8	197	30	19	27	23	1.98
49472098--49472600	48	10.5	51	73	15	262	29	17	27	25	1.98
49472188--49472605	49	8.7	49	74	14	252	27	17	27	26	1.98
49472282--49472608	147	2.2	147	100	0	654	27	17	28	26	1.97
49494394--49494466	30	2.5	32	74	17	77	53	1	1	43	1.17
49494576--49494622	23	2.0	23	100	0	94	25	19	4	51	1.65
49495090--49495218	58	2.2	58	81	0	150	20	24	20	33	1.97
49497274--49497455	67	2.9	59	77	15	188	48	7	9	33	1.65
49498761--49498965	103	2.0	104	88	6	308	26	15	15	42	1.86
49501578--49501621	22	2.0	22	86	0	61	52	0	0	47	1.00
49501641--49501682	13	2.9	14	80	13	50	54	0	0	45	0.99
49501645--49501681	16	2.3	16	86	13	58	59	0	0	40	0.97
49502231--49502269	14	2.8	14	88	7	53	33	15	7	43	1.75
49502504--49502621	59	2.0	59	80	9	134	58	0	1	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49510919--49511089	46	3.7	46	74	14	129	29	19	29	21	1.98
49515705--49515733	14	2.1	14	100	0	58	41	0	31	27	1.56
49517251--49517289	20	1.9	21	84	5	53	79	5	10	5	1.04
49520532--49520580	24	2.0	24	96	0	89	36	14	4	44	1.64
49528515--49528548	13	2.6	13	90	0	50	23	14	14	47	1.82
49531484--49531549	34	1.9	34	84	9	89	39	0	6	54	1.25
49531591--49531800	113	1.9	113	82	4	271	21	2	16	59	1.49
49531822--49532260	137	3.2	137	88	5	652	29	2	13	54	1.52
49532001--49532207	65	3.1	65	64	24	140	29	1	13	54	1.50
49535481--49535607	42	3.0	42	80	6	134	30	25	13	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322