genome.fa.s2.2.7.7.80.10.50.1000.285.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  285  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94593200--94593379	81	2.2	81	83	3	229	27	15	27	30	1.96
94593691--94593783	47	2.0	47	95	0	168	24	6	38	30	1.81
94608922--94609084	39	4.2	39	91	0	236	27	28	20	23	1.99
94617057--94617204	39	3.8	39	90	1	217	29	29	20	20	1.98
94617057--94617204	77	1.9	78	87	1	217	29	29	20	20	1.98
94623720--94623909	40	4.8	40	91	2	294	24	28	23	23	2.00
94629223--94629249	13	2.1	13	100	0	54	37	14	7	40	1.74
94631844--94631927	15	5.7	15	81	6	91	8	16	17	57	1.63
94631837--94631926	30	3.0	30	79	7	103	8	17	16	56	1.65
94632476--94632861	94	4.1	94	99	0	754	32	13	23	31	1.93
94638973--94639184	45	4.7	45	79	2	210	36	17	22	23	1.95
94639156--94639266	46	2.4	46	90	3	179	45	13	21	18	1.84
94639366--94639430	26	2.5	26	80	12	71	41	1	16	40	1.58
94639459--94639519	27	2.2	28	80	8	72	50	4	13	31	1.62
94641034--94641074	20	2.0	21	90	4	66	9	24	0	65	1.22
94641034--94641074	21	2.0	20	86	13	57	9	24	0	65	1.22
94641987--94642047	20	3.0	21	77	15	65	52	1	0	45	1.10
94645669--94645715	22	2.1	22	88	0	67	14	40	23	21	1.90
94648772--94648807	18	2.0	18	100	0	72	33	11	16	38	1.84
94657646--94657762	43	2.6	43	85	5	144	32	9	14	43	1.77
94658761--94658851	41	2.2	41	82	3	112	23	20	26	29	1.99
94662800--94662875	38	2.0	38	94	0	134	26	6	27	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94663211--94663248	20	1.9	20	88	0	58	23	10	28	36	1.88
94670464--94670488	12	2.1	12	100	0	50	44	16	8	32	1.76
94678513--94678583	36	2.0	36	91	0	115	23	22	14	39	1.91
94683717--94683894	27	6.6	27	83	3	205	26	15	28	29	1.96
94683718--94683873	82	1.9	81	88	3	233	26	15	28	29	1.96
94683714--94683894	82	2.2	81	83	2	229	27	15	27	29	1.96
94694627--94694777	40	3.8	41	87	8	206	27	21	27	23	1.99
94694666--94694851	40	4.7	40	89	3	227	27	21	26	24	1.99
94694627--94694851	80	2.8	79	81	8	260	26	22	27	24	2.00
94703760--94703796	18	2.1	18	100	0	74	45	27	5	21	1.73
94725536--94725594	30	2.0	30	86	0	82	57	10	3	28	1.48
94731665--94731696	16	2.1	15	94	5	55	37	12	25	25	1.91
94733252--94733290	20	2.0	20	94	0	69	30	10	23	35	1.88
94734880--94735300	104	4.0	104	94	0	680	29	17	19	34	1.94
94740662--94740844	79	2.3	81	84	7	232	25	27	22	24	2.00
94740641--94740844	40	5.1	40	82	8	238	25	27	22	24	2.00
94748512--94748694	79	2.3	81	84	7	232	25	27	22	24	2.00
94748491--94748694	40	5.1	40	82	8	238	25	27	22	24	2.00
94767168--94767256	28	3.1	27	82	6	97	26	17	26	28	1.98
94767176--94767290	57	2.0	56	81	8	135	27	17	28	26	1.97
94769865--94769962	51	1.9	51	85	0	133	31	26	17	24	1.97
94769923--94770007	43	2.0	43	92	0	143	30	25	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94769934--94770079	43	3.4	42	80	1	112	33	26	15	24	1.95
94772992--94773081	29	3.1	29	91	1	137	31	28	12	27	1.93
94773294--94773328	16	2.2	16	94	0	61	8	11	20	60	1.57
94774011--94774039	4	7.2	4	100	0	58	75	0	0	24	0.80
94775993--94776295	40	7.6	40	89	2	396	27	27	20	24	1.99
94780967--94781144	27	6.6	27	84	3	205	29	28	15	26	1.96
94780988--94781143	82	1.9	81	88	3	233	29	28	15	26	1.96
94781628--94781654	12	2.2	12	100	0	54	40	0	7	51	1.30
94784289--94784319	16	1.9	16	93	0	53	35	22	0	41	1.54
94784287--94784325	20	2.0	20	89	0	60	35	20	0	43	1.52
94784570--94784765	55	3.6	53	79	6	189	21	24	17	35	1.95
94792459--94792550	47	2.0	47	95	0	166	19	19	22	38	1.94
94803557--94803786	115	2.0	115	94	0	406	30	13	22	33	1.92
94805292--94805338	25	1.9	25	82	4	60	42	4	8	44	1.54
94808429--94808646	43	4.9	44	79	6	192	23	15	27	33	1.95
94825099--94825151	15	3.5	15	87	10	65	13	15	16	54	1.71
94832096--94832284	38	4.9	38	83	5	211	30	25	23	21	1.99
94839409--94839537	46	2.8	46	91	0	195	19	19	30	31	1.96
94841474--94841534	30	2.0	30	100	0	122	31	19	16	32	1.94
94841739--94841927	38	4.9	38	91	2	263	30	26	22	20	1.98
94842704--94842900	100	2.0	100	98	0	385	39	24	5	30	1.77
94845040--94845119	6	13.3	6	73	10	65	16	6	1	76	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94855638--94855758	39	3.1	39	92	2	172	21	25	29	23	1.99
94867363--94867615	40	6.3	39	85	3	308	29	16	22	31	1.96
94867361--94867615	120	2.1	120	84	5	354	29	16	21	31	1.96
94867921--94867955	14	2.5	14	90	0	52	20	0	31	48	1.50
94867967--94868011	21	2.1	22	87	4	65	28	0	26	44	1.55
94868007--94868080	7	10.3	7	79	5	76	21	0	51	27	1.48
94868025--94868080	22	2.5	22	94	0	94	25	0	51	23	1.48
94868109--94868188	30	2.7	30	96	1	144	20	0	35	45	1.51
94868109--94868188	15	5.4	14	87	12	108	20	0	35	45	1.51
94868183--94868229	21	2.2	22	80	3	51	17	0	42	40	1.49
94868193--94868271	14	5.6	14	74	3	70	21	0	43	35	1.53
94868220--94868284	28	2.3	29	83	2	87	23	0	43	33	1.54
94868218--94868284	7	9.4	7	78	3	53	22	0	44	32	1.53
94873339--94873385	20	2.3	20	88	0	67	14	8	8	68	1.39
94873461--94873495	16	2.2	16	89	0	52	28	8	20	42	1.81
94873786--94873845	30	2.0	30	96	0	111	23	15	20	41	1.89
94874665--94874698	15	2.3	15	89	0	50	17	8	20	52	1.71
94875892--94875920	11	2.7	11	94	5	51	48	0	10	41	1.37
94881545--94881741	40	5.0	40	90	3	283	24	20	24	29	1.99
94884026--94884076	26	2.0	26	96	0	93	27	21	13	37	1.91
94888007--94888122	45	2.6	45	80	4	126	33	29	13	23	1.93
94908233--94908417	79	2.3	81	84	7	236	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94908233--94908417	40	4.7	40	83	7	234	25	27	22	24	2.00
94910400--94910514	29	4.0	29	85	6	146	27	29	15	26	1.96
94910733--94910761	8	3.6	8	100	0	58	10	24	24	41	1.86
94916955--94917070	47	2.5	47	95	1	207	30	20	26	22	1.98
94917094--94917240	46	3.2	44	80	11	136	30	19	26	23	1.98
94917136--94917261	47	2.8	44	80	10	130	27	19	28	23	1.99
94919633--94919679	23	2.0	23	95	0	85	40	6	17	36	1.75
94928661--94928718	29	2.0	30	82	3	73	27	22	3	46	1.68
94929068--94929241	46	3.8	45	78	8	145	28	18	29	23	1.98
94929225--94929278	27	2.0	27	96	0	99	31	22	24	22	1.98
94946615--94946679	24	2.8	24	83	2	69	47	13	15	23	1.81
94950420--94951001	291	2.0	291	99	0	1148	36	26	12	23	1.91
94958692--94958869	27	6.6	27	84	3	205	29	28	15	26	1.96
94958713--94958868	82	1.9	81	88	3	233	29	28	15	26	1.96
94970920--94971046	43	3.0	44	73	10	138	36	22	15	25	1.94
94976929--94977231	40	7.6	40	90	2	405	24	20	27	27	1.99
94986397--94986492	30	3.2	30	63	21	74	45	0	17	36	1.49
95000099--95000278	40	4.5	40	92	2	292	23	23	26	26	2.00
95003697--95003958	39	6.7	40	88	7	337	24	27	22	25	2.00
95007778--95008001	112	2.0	112	98	0	430	33	25	13	27	1.93
95011504--95011671	83	2.0	83	98	0	327	41	22	23	13	1.89
95012116--95012238	28	4.4	28	88	2	167	32	28	13	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95022689--95022767	37	2.1	37	90	0	122	25	31	18	24	1.98
95022940--95023185	49	5.1	49	94	2	451	30	28	8	33	1.86
95026334--95026595	46	5.6	46	81	10	275	22	29	19	29	1.98
95030027--95030084	27	2.1	27	90	0	89	34	13	12	39	1.82
95030082--95030319	27	9.1	27	80	8	222	30	6	21	42	1.77
95030070--95030319	54	4.8	54	78	10	250	30	6	20	42	1.77
95030070--95030319	81	3.2	80	81	8	275	30	6	20	42	1.77
95030640--95030694	28	2.0	28	85	0	74	23	34	20	21	1.97
95034678--95034848	93	1.8	93	92	0	288	28	28	20	22	1.98
95034673--95034842	46	3.7	46	75	13	168	29	28	19	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322