Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  123  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40225135--40225333
100
2.0
100
97
0
380
44
11
10
34
1.73
40226070--40226257
40
4.7
40
94
0
304
31
20
26
22
1.98
40243904--40244167
40
6.7
40
89
5
360
25
27
21
25
1.99
40250767--40250839
10
7.4
10
73
14
53
39
2
13
43
1.59
40250775--40250828
20
2.7
20
97
0
99
38
3
14
42
1.64
40252208--40252238
12
2.6
12
94
0
53
19
38
25
16
1.92
40254018--40254117
24
4.2
24
86
11
118
35
20
21
24
1.96
40254035--40254140
24
4.6
22
78
14
99
35
17
20
25
1.95
40254027--40254156
46
2.8
47
80
12
126
36
17
21
24
1.95
40256352--40256442
45
2.0
45
91
4
148
36
14
10
38
1.81
40256452--40256524
36
2.0
36
84
5
94
34
8
8
49
1.62
40256488--40256608
58
2.1
57
86
7
165
36
9
7
46
1.65
40263761--40264155
82
4.9
82
86
5
579
21
7
25
46
1.78
40263725--40264155
159
2.7
157
90
2
646
21
8
23
46
1.77
40264118--40264183
28
2.5
27
80
9
73
28
7
15
48
1.72
40267639--40267690
9
5.8
9
95
0
86
23
9
28
38
1.86
40267851--40267875
12
2.1
12
100
0
50
16
24
36
24
1.94
40267877--40267932
27
2.1
27
100
0
112
30
25
14
30
1.95
40280953--40281123
93
1.8
93
92
0
288
28
27
21
22
1.99
40280945--40281120
46
3.8
46
76
12
189
29
27
20
22
1.99
40281546--40281605
30
2.0
30
90
0
93
30
25
8
36
1.85
40285680--40285997
127
2.5
127
86
1
422
36
20
16
27
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40286467--40286517
23
2.2
22
83
10
66
60
1
7
29
1.36
40287959--40287994
8
4.5
8
86
13
56
88
0
0
11
0.50
40287954--40287993
15
2.6
16
92
4
64
85
0
2
12
0.71
40288537--40288577
15
2.5
17
84
7
59
34
7
2
56
1.40
40290318--40290357
20
2.0
20
100
0
80
30
20
20
30
1.97
40291026--40291085
28
2.1
28
93
0
102
36
30
8
25
1.85
40293002--40293059
30
1.9
30
89
0
89
58
12
3
25
1.49
40296331--40296361
15
2.1
15
100
0
62
48
12
25
12
1.77
40308493--40308604
43
2.6
43
87
2
145
31
27
16
24
1.97
40314113--40314188
34
2.2
34
88
2
107
26
26
17
30
1.97
40321350--40321376
8
3.4
8
100
0
54
44
0
0
55
0.99
40338998--40339036
19
2.1
18
86
13
53
23
25
12
38
1.90
40347073--40347317
44
5.7
44
76
11
272
33
21
25
19
1.97
40347080--40347401
42
7.5
42
77
9
285
35
20
23
20
1.96
40347080--40347350
86
3.2
86
96
1
490
33
20
24
20
1.97
40347210--40347444
128
1.8
128
88
3
357
36
21
21
20
1.96
40347338--40347551
89
2.4
88
81
6
238
36
22
21
18
1.95
40349447--40349476
15
2.0
15
93
0
51
26
6
3
63
1.35
40355187--40355225
5
7.6
5
82
5
51
74
2
2
20
1.06
40355187--40355225
16
2.5
15
84
8
51
74
2
2
20
1.06
40358880--40358960
6
13.3
6
75
7
56
71
4
7
16
1.26
40358893--40358950
19
3.1
17
79
20
55
72
3
8
15
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40362697--40362745
18
2.7
18
78
6
55
73
0
6
20
1.04
40384002--40384040
19
2.0
20
90
5
62
48
2
0
48
1.15
40384174--40384249
32
2.5
30
74
17
77
59
2
1
36
1.20
40384644--40384691
21
2.3
21
85
7
71
33
6
0
60
1.22
40384644--40384691
10
4.5
11
77
17
57
33
6
0
60
1.22
40384624--40384697
31
2.4
31
82
10
82
31
5
1
62
1.26
40384644--40384697
21
2.7
19
83
16
65
31
5
0
62
1.18
40386635--40386703
27
2.7
25
80
14
70
17
23
20
39
1.92
40389216--40389241
12
2.2
12
100
0
52
69
0
7
23
1.14
40390161--40390219
10
6.0
10
82
11
77
71
1
6
20
1.18
40392881--40392945
28
2.3
27
80
17
71
16
13
3
66
1.38
40400433--40400474
22
1.9
22
85
9
59
61
2
4
30
1.29
40416893--40416958
29
2.2
30
91
2
107
24
4
25
45
1.72
40421100--40421138
17
2.4
16
84
16
53
56
0
12
30
1.37
40436347--40436456
45
2.4
46
83
1
123
17
20
18
43
1.88
40436433--40436588
45
3.5
44
80
7
154
24
19
16
39
1.92
40436479--40436602
45
2.8
45
85
4
153
26
19
16
37
1.92
40436433--40436600
90
1.9
89
81
3
203
23
19
17
39
1.92
40446958--40446999
17
2.6
17
85
7
52
73
7
4
14
1.21
40449708--40449805
29
3.4
29
94
0
169
31
10
32
25
1.89
40449798--40449987
32
5.9
32
88
5
222
32
10
22
34
1.88
40449798--40449987
64
3.0
65
87
2
276
32
10
22
34
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40453769--40454193
138
3.1
138
89
0
634
45
4
7
42
1.54
40454211--40454377
75
2.2
74
80
3
210
32
13
8
45
1.74
40458806--40458907
51
2.0
51
94
0
177
33
4
29
32
1.79
40459912--40460037
62
2.0
61
86
4
173
28
31
18
21
1.97
40466451--40466483
16
2.0
17
94
5
59
21
6
0
72
1.05
40473601--40473818
40
5.5
40
87
2
280
24
26
22
26
2.00
40478950--40479011
25
2.5
25
89
5
90
35
17
4
41
1.71
40479390--40479443
7
7.6
7
84
12
58
59
0
1
38
1.08
40487348--40487442
31
3.1
29
85
8
93
46
12
7
33
1.70
40487363--40487442
29
2.6
30
88
5
108
46
13
6
33
1.69
40488042--40488095
24
2.2
24
96
0
99
40
27
16
14
1.88
40488431--40488539
52
2.1
52
88
3
159
30
17
17
34
1.93
40490711--40490819
56
1.9
56
92
0
182
40
11
13
33
1.82
40493087--40493139
20
2.7
20
90
0
79
52
5
20
20
1.66
40496348--40496476
42
3.0
41
74
6
123
33
23
14
28
1.94
40499216--40499272
18
3.2
18
94
0
96
36
14
19
29
1.91
40499858--40500031
43
4.0
43
77
12
155
30
25
19
24
1.98
40499868--40500029
86
1.9
85
83
8
213
30
24
19
25
1.98
40502901--40502938
4
9.2
4
88
5
58
0
21
2
76
0.91
40502900--40502936
13
3.0
12
92
4
56
0
18
2
78
0.87
40503058--40503096
19
2.1
19
85
9
53
33
5
7
53
1.51
40508735--40508820
39
2.2
38
79
6
91
32
22
23
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40515236--40515417
3
60.3
3
70
17
76
25
7
4
62
1.40
40515236--40515294
13
4.7
12
77
8
55
32
6
0
61
1.22
40515236--40515291
16
3.5
15
78
9
58
32
7
0
60
1.24
40515540--40515573
3
11.3
3
93
0
59
32
2
0
64
1.08
40515541--40515580
9
4.6
9
90
3
55
35
5
0
60
1.19
40515719--40515775
24
2.3
25
77
17
64
29
1
1
66
1.12
40515738--40515771
15
2.3
15
89
0
50
32
2
2
61
1.26
40552862--40552895
16
2.1
16
88
5
50
70
8
0
20
1.13
40554037--40554070
14
2.3
15
90
5
52
29
5
0
64
1.17
40554246--40554280
3
11.7
3
100
0
70
31
0
0
68
0.90
40554309--40554374
18
3.6
17
74
9
51
25
9
1
63
1.33
40554285--40554346
23
2.8
22
76
9
63
22
8
0
69
1.14
40554297--40554374
37
2.1
38
83
7
97
24
8
1
65
1.29
40555253--40555281
14
2.1
14
100
0
58
17
27
0
55
1.42
40555405--40555432
8
3.5
8
100
0
56
50
0
0
50
1.00
40557319--40557646
163
2.0
163
100
0
656
33
19
17
28
1.95
40560833--40560909
10
8.4
9
76
12
68
33
2
0
63
1.08
40560831--40560871
17
2.3
18
80
16
50
39
0
0
60
0.96
40560822--40560897
27
2.9
25
81
12
82
34
2
0
63
1.09
40560843--40560910
36
1.9
35
88
8
102
32
2
0
64
1.08
40561417--40561485
29
2.5
28
84
11
88
62
14
1
21
1.40
40562157--40562199
22
2.0
22
90
0
68
34
2
16
46
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40567430--40567469
17
2.4
16
87
8
53
17
5
0
77
0.94
40568517--40568689
25
6.8
25
68
13
84
30
7
3
58
1.42
40568584--40568657
27
2.8
29
73
21
81
33
8
0
58
1.28
40574972--40574998
14
1.9
14
100
0
54
59
11
7
22
1.56
40580476--40580591
50
2.4
49
82
5
139
27
20
14
37
1.92
40585551--40585712
33
4.9
33
83
4
175
32
20
11
35
1.88
40585550--40585700
65
2.3
66
79
3
171
33
19
12
34
1.90
40585705--40585802
29
3.4
29
97
0
178
25
29
10
34
1.89
40590290--40590355
27
2.4
27
78
11
73
39
12
24
24
1.89
40591986--40592038
18
2.9
18
78
8
54
75
1
0
22
0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322