Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  17  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4776639--4777257
81
7.6
81
83
2
704
30
23
18
27
1.97
4776633--4777257
162
3.9
162
88
1
831
30
23
18
27
1.97
4776639--4777264
243
2.6
242
83
1
788
30
23
18
27
1.98
4781081--4781123
19
2.3
19
100
0
86
62
4
0
32
1.15
4782151--4782227
29
2.6
29
83
4
91
49
14
12
23
1.78
4783054--4783505
81
5.5
81
96
0
796
29
23
20
26
1.99
4783054--4784449
162
8.4
162
85
9
1828
28
24
20
26
1.99
4783480--4783545
33
2.0
33
100
0
132
30
36
18
15
1.91
4783399--4783619
114
1.9
114
94
0
388
28
27
20
23
1.99
4783513--4784449
81
11.6
81
97
0
1642
27
25
20
26
1.99
4783318--4783700
195
2.0
195
96
0
712
28
25
20
25
1.99
4785324--4785352
5
5.8
5
100
0
58
82
0
17
0
0.66
4787009--4787270
81
3.2
81
77
6
235
32
23
14
28
1.95
4787009--4787366
161
2.3
157
78
6
393
31
23
15
29
1.95
4792273--4792311
20
2.0
20
100
0
78
46
5
20
28
1.72
4795940--4795997
29
1.9
31
82
6
75
32
10
15
41
1.81
4802249--4802306
22
2.6
22
84
7
73
43
17
3
36
1.66
4802262--4802340
21
3.8
19
80
12
77
39
16
7
36
1.77
4802296--4802339
21
2.1
21
100
0
88
38
13
9
38
1.77
4807152--4807189
14
2.7
15
84
16
62
39
0
13
47
1.42
4816969--4817294
73
4.5
73
92
2
505
32
18
17
31
1.94
4817227--4817472
88
2.8
87
83
4
289
34
19
17
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4817517--4817622
54
1.9
55
84
5
144
38
18
15
27
1.91
4817581--4817837
72
3.5
71
86
7
352
33
19
15
31
1.93
4817581--4817823
76
3.3
75
90
2
336
31
19
16
32
1.94
4817841--4818015
70
2.5
70
85
4
212
33
22
14
28
1.94
4829842--4830100
130
2.0
130
98
0
500
44
10
13
31
1.77
4830642--4830714
21
3.5
20
77
18
69
61
1
6
30
1.30
4830657--4830699
15
2.9
15
78
21
54
65
0
4
30
1.13
4831234--4831285
17
3.4
17
65
25
51
5
42
40
11
1.65
4831224--4831314
29
3.1
29
98
0
173
7
41
37
13
1.73
4832114--4832388
108
2.6
107
85
4
378
26
23
22
26
2.00
4832307--4832596
99
2.9
99
85
5
381
23
19
26
30
1.98
4836738--4836804
31
2.1
32
86
2
91
43
7
1
47
1.40
4838375--4838417
20
2.1
21
82
4
52
25
2
2
69
1.12
4848657--4848743
43
2.0
43
86
2
122
35
9
4
50
1.55
4850323--4850353
16
1.9
16
93
0
53
58
35
0
6
1.24
4854737--4854777
21
2.0
21
85
4
57
63
2
2
31
1.20
4861294--4861408
42
2.7
42
86
4
160
29
24
13
32
1.94
4861526--4861612
31
2.8
31
91
0
138
25
27
19
27
1.99
4861588--4861716
50
2.5
51
88
5
190
24
22
16
36
1.94
4867435--4867470
14
2.8
12
84
15
54
25
0
0
75
0.81
4868691--4868733
19
2.3
19
100
0
86
23
20
25
30
1.99
4870937--4871015
38
2.2
36
84
11
99
22
17
21
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4871290--4871346
30
1.9
30
100
0
114
43
3
3
49
1.36
4871770--4871795
13
2.0
13
100
0
52
38
0
15
46
1.46
4874758--4874842
42
2.0
42
97
0
161
38
2
14
44
1.58
4875533--4875566
17
1.9
18
88
5
52
50
11
0
38
1.39
4879704--4879795
46
2.0
46
97
0
175
60
2
11
25
1.42
4890984--4891031
20
2.3
20
82
10
62
31
2
6
60
1.33
4891327--4891491
83
2.0
83
98
0
321
33
19
25
21
1.97
4892430--4892456
3
9.0
3
100
0
54
66
0
0
33
0.92
4898732--4898770
18
2.2
18
90
4
62
66
5
0
28
1.12
4905409--4905565
47
3.3
47
92
0
233
26
31
7
35
1.84
4910040--4910091
27
1.9
27
84
7
70
53
5
11
28
1.60
4910465--4910515
3
17.0
3
76
15
52
64
1
0
33
1.05
4910465--4910515
15
3.4
15
89
5
68
64
1
0
33
1.05
4918395--4918455
30
2.0
30
100
0
122
65
0
4
29
1.13
4926528--4926637
26
4.2
26
92
2
177
38
23
4
33
1.75
4936468--4936498
12
2.6
12
94
0
53
35
32
16
16
1.91
4936565--4936622
31
1.9
31
85
3
82
32
10
5
51
1.58
4940689--4940718
15
2.1
15
93
6
53
43
13
0
43
1.43
4943527--4943599
35
2.1
35
100
0
146
31
6
21
39
1.80
4951154--4951553
162
2.5
162
85
0
541
30
22
18
29
1.97
4951162--4951554
81
4.9
81
80
5
416
30
21
18
29
1.97
4953468--4953500
16
2.1
16
94
0
57
27
12
21
39
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4955564--4955604
21
2.0
21
90
0
64
19
29
21
29
1.98
4956792--4956937
42
3.5
42
79
4
170
21
17
23
37
1.94
4956984--4957295
44
6.8
45
71
15
126
28
22
17
31
1.97
4956941--4957289
88
3.8
88
71
16
244
28
22
17
32
1.96
4957129--4957425
44
6.8
44
73
11
150
28
23
17
30
1.97
4957442--4957975
132
4.0
132
94
0
897
29
25
17
27
1.97
4957442--4959055
44
36.6
44
67
11
531
29
25
17
27
1.98
4957442--4957975
265
2.0
264
93
0
906
29
25
17
27
1.97
4958059--4958252
46
4.3
46
66
15
143
31
24
19
25
1.98
4957983--4958367
134
2.9
134
96
0
689
29
22
20
27
1.99
4958305--4959151
132
6.4
132
94
0
1316
29
26
17
27
1.97
4971333--4971362
12
2.5
12
94
0
51
46
0
6
46
1.29
4971445--4971491
16
2.7
17
80
9
51
63
4
0
31
1.13
4971448--4971496
17
2.7
19
78
15
59
61
8
0
30
1.25
4971710--4971795
3
29.3
3
73
19
60
66
1
3
29
1.16
4971715--4971795
18
4.4
18
77
13
76
66
1
3
28
1.16
4972132--4972180
23
2.2
23
85
3
64
57
28
2
12
1.46
4992706--4992812
51
2.2
47
83
9
128
26
17
28
28
1.98
4992724--4992824
51
2.0
51
94
0
175
28
16
24
29
1.97
4992836--4993079
51
4.8
51
76
2
222
29
17
23
28
1.97
4992721--4992951
123
1.9
123
93
0
399
30
16
25
28
1.97
4992836--4993080
102
2.4
102
88
1
348
30
17
23
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4995015--4995053
18
2.2
18
85
0
51
30
7
0
61
1.24
4995200--4995270
2
36.5
2
73
5
56
42
7
1
49
1.38
4995223--4995317
41
2.3
38
73
22
75
38
9
1
50
1.42
4999213--4999248
17
2.1
17
90
10
56
66
5
0
27
1.13
5000209--5000265
27
2.2
26
81
6
62
43
5
24
26
1.75
5004363--5004421
31
1.9
31
82
6
75
22
16
8
52
1.70
5008546--5008582
9
4.1
9
85
0
56
45
16
10
27
1.80
5011223--5011248
3
8.7
3
100
0
52
69
0
0
30
0.89
5017388--5017459
33
2.2
33
94
2
126
45
8
1
44
1.42
5019069--5019121
17
3.1
17
83
2
70
50
1
22
24
1.59
5024523--5024547
8
3.1
8
100
0
50
48
28
0
24
1.52
5027523--5028029
46
11.1
46
64
13
197
26
20
23
29
1.99
5027440--5027824
134
2.9
134
98
0
743
25
20
25
28
1.99
5027760--5027917
45
3.4
45
69
17
142
28
18
24
28
1.98
5027706--5027926
95
2.4
88
84
10
307
27
19
24
28
1.99
5027732--5027919
95
2.0
95
97
0
358
28
19
23
28
1.98
5032920--5032954
17
2.1
17
89
10
54
65
5
0
28
1.15
5032953--5032979
12
2.2
12
100
0
54
51
0
0
48
1.00
5033430--5033487
27
2.2
27
84
6
75
43
3
27
25
1.71
5044198--5044236
20
2.0
20
85
10
53
7
23
2
66
1.30
5050597--5050675
31
2.5
31
80
9
90
20
16
8
54
1.68
5051753--5051852
31
3.2
31
94
0
164
50
11
19
20
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5055639--5055695
24
2.3
24
78
3
69
54
5
8
31
1.53
5070645--5070710
28
2.3
31
84
10
86
63
3
6
27
1.32
5070652--5070759
56
2.0
56
82
10
134
61
2
5
30
1.33
5075941--5076002
31
2.0
31
100
0
124
29
6
35
29
1.82
5079752--5079777
6
4.3
6
100
0
52
34
0
0
65
0.93
5090812--5090869
18
2.9
21
78
19
70
34
18
43
3
1.68
5090746--5090943
105
1.9
105
82
2
254
39
18
29
12
1.87
5090762--5090977
105
2.1
104
79
8
224
40
16
30
12
1.85
5091110--5091160
26
2.0
26
84
7
68
39
5
0
54
1.24
5091298--5091497
86
2.3
86
81
8
237
27
19
29
24
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322