Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  277  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92012237--92012285
15
3.4
14
78
13
55
36
0
0
63
0.95
92012237--92012296
13
4.3
13
79
12
50
36
0
0
63
0.95
92014858--92014915
21
2.9
21
79
5
66
34
12
1
51
1.49
92018327--92018367
18
2.3
18
86
0
55
39
2
7
51
1.43
92019166--92019420
45
5.7
45
100
0
510
38
15
19
27
1.92
92025018--92025191
45
3.9
45
90
0
249
40
15
18
25
1.90
92027662--92027760
50
2.0
50
87
0
144
28
22
26
23
1.99
92027663--92027760
25
4.0
24
78
5
97
28
22
25
23
1.99
92032569--92032797
46
5.0
46
84
4
273
22
24
14
38
1.92
92032569--92032797
93
2.5
92
83
3
289
22
24
14
38
1.92
92034938--92034989
11
4.7
11
76
9
52
63
3
0
32
1.12
92038197--92038240
12
3.4
12
77
17
52
59
15
2
22
1.48
92038192--92038244
27
2.0
27
100
0
106
56
16
3
22
1.56
92038192--92038233
12
3.0
15
73
20
54
54
19
2
23
1.55
92038242--92038277
15
2.4
15
100
0
72
36
36
0
27
1.57
92040001--92040044
23
1.9
23
86
9
63
36
13
9
40
1.76
92043175--92043308
40
3.4
40
79
7
157
32
24
18
24
1.97
92045878--92045936
31
1.9
31
89
0
91
32
6
8
52
1.58
92056664--92056693
15
1.9
16
93
6
53
53
3
3
40
1.34
92063072--92063109
20
2.0
20
89
5
60
39
2
13
44
1.57
92063272--92063314
17
2.6
17
77
3
52
55
0
4
39
1.20
92063353--92063417
33
2.0
32
91
5
105
72
3
12
12
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92063355--92063427
33
2.3
33
86
9
98
73
2
12
10
1.19
92063514--92063564
26
2.0
26
96
0
93
27
17
15
39
1.90
92065351--92065406
22
2.5
22
82
0
67
23
30
28
17
1.97
92070756--92070798
17
2.4
18
76
7
52
51
2
4
41
1.35
92073955--92074006
24
2.2
24
85
0
68
53
9
3
32
1.51
92085806--92085845
20
2.0
20
100
0
80
30
20
10
40
1.85
92085731--92085981
95
2.6
95
99
0
493
27
25
12
34
1.92
92085901--92085940
20
2.0
20
100
0
80
30
20
10
40
1.85
92088410--92088440
15
2.0
16
93
6
55
35
0
0
64
0.94
92088648--92088717
16
4.4
16
94
0
104
31
0
34
34
1.58
92088696--92088805
45
2.6
41
78
9
116
35
4
28
31
1.77
92088951--92088985
18
2.0
17
88
5
52
54
0
0
45
0.99
92088838--92089152
157
2.0
157
96
0
585
44
3
5
47
1.42
92089088--92089129
15
2.7
16
82
14
52
52
2
0
45
1.13
92089097--92089138
15
2.9
15
82
10
52
52
0
0
47
1.00
92089123--92089309
54
3.1
61
68
20
183
48
6
2
41
1.44
92089094--92089309
120
1.8
120
95
0
396
49
6
2
42
1.40
92089228--92089262
18
2.0
17
88
5
52
54
0
0
45
0.99
92093905--92093947
21
2.0
21
95
0
77
13
25
18
41
1.88
92094176--92094220
21
2.1
21
91
0
72
22
2
20
55
1.54
92105060--92105091
16
2.0
16
100
0
64
31
6
18
43
1.75
92108914--92108938
13
1.9
13
100
0
50
56
32
4
8
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92109896--92110025
44
3.0
43
81
6
145
32
28
16
23
1.96
92109896--92110025
43
3.0
44
82
6
149
32
28
16
23
1.96
92112523--92112567
13
3.3
14
77
22
51
60
0
4
35
1.17
92112561--92112601
13
3.2
13
89
6
57
80
0
9
9
0.91
92112940--92114464
762
2.0
762
99
0
3032
34
11
21
32
1.90
92117664--92117701
19
2.0
19
94
0
67
28
13
15
42
1.85
92117761--92117816
27
2.1
27
100
0
112
28
17
8
44
1.79
92120797--92120857
22
2.7
22
84
5
68
67
4
4
22
1.30
92120804--92120898
19
5.1
19
74
11
72
70
7
3
18
1.24
92120854--92120914
22
2.8
21
80
5
68
75
9
3
11
1.16
92122084--92122187
51
2.0
51
100
0
208
37
31
15
15
1.89
92127381--92127517
50
2.7
51
84
5
179
43
5
14
36
1.68
92133696--92133788
18
5.2
18
90
0
150
31
16
24
27
1.96
92133696--92133788
36
2.6
36
94
0
168
31
16
24
27
1.96
92142084--92142168
38
2.2
38
85
6
109
36
30
18
14
1.91
92142505--92142897
196
2.0
196
98
0
759
35
15
2
46
1.60
92143980--92144015
12
2.7
14
87
12
58
38
13
0
47
1.44
92156167--92156221
25
2.1
25
83
6
65
58
7
5
29
1.48
92161510--92161547
14
2.7
15
88
12
62
34
0
0
65
0.93
92161509--92161548
19
2.2
18
86
13
55
37
0
0
62
0.95
92162129--92162177
23
2.1
23
85
7
64
48
0
0
51
1.00
92162146--92162184
20
1.9
21
84
5
53
56
0
0
43
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92163873--92163928
3
18.7
3
100
0
112
66
0
0
33
0.92
92164024--92164086
21
3.0
21
72
23
60
65
3
7
23
1.34
92178361--92178401
21
2.0
21
95
0
73
19
17
31
31
1.95
92186944--92187108
82
2.0
82
97
0
312
8
32
4
54
1.50
92189374--92189435
10
6.1
10
84
1
61
67
0
9
22
1.19
92189376--92189435
20
3.0
20
82
0
84
68
0
10
21
1.19
92189376--92189433
30
1.9
30
86
6
82
68
0
10
20
1.18
92193742--92193827
34
2.5
34
96
0
154
55
6
11
25
1.60
92194598--92194645
10
4.8
10
80
16
55
64
2
10
22
1.35
92197981--92198018
18
2.1
18
95
0
67
50
10
0
39
1.37
92200489--92200608
59
2.0
59
93
0
204
20
31
13
34
1.91
92203826--92203860
12
2.8
12
91
4
52
68
0
0
31
0.90
92204270--92204322
18
2.9
19
75
8
56
66
0
1
32
1.03
92205348--92205436
29
3.4
28
69
28
88
38
12
0
49
1.41
92205359--92205446
19
5.1
18
70
24
73
38
14
0
46
1.45
92205345--92205442
49
2.0
49
100
0
196
36
14
0
48
1.44
92205405--92205457
19
2.8
20
77
11
58
39
11
0
49
1.39
92209838--92209879
19
2.3
18
84
12
50
4
9
2
83
0.88
92214493--92214524
15
2.2
15
94
5
57
65
0
3
31
1.08
92215820--92215852
17
1.9
17
93
0
57
30
6
12
51
1.63
92219173--92219259
21
4.0
23
80
10
92
37
25
21
14
1.92
92219631--92219688
15
3.8
15
88
2
89
51
12
0
36
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92220966--92220999
5
6.4
5
87
12
50
58
0
0
41
0.98
92221022--92221050
8
3.6
8
100
0
58
62
0
0
37
0.96
92220964--92221069
52
2.0
56
83
14
143
56
3
0
39
1.17
92225599--92225673
21
3.5
22
83
7
91
37
26
21
14
1.92
92225598--92225686
21
4.0
23
81
7
87
35
24
21
17
1.95
92226056--92226113
15
3.8
15
88
2
89
51
12
0
36
1.39
92227391--92227424
5
6.4
5
87
12
50
58
0
0
41
0.98
92227447--92227475
8
3.6
8
100
0
58
62
0
0
37
0.96
92227389--92227494
52
2.0
56
83
14
143
56
3
0
39
1.17
92232766--92232814
22
2.2
23
82
10
57
53
0
0
46
1.00
92250396--92251005
44
13.9
44
88
0
835
28
14
29
27
1.96
92252056--92252099
22
2.0
22
95
0
79
43
9
34
13
1.76
92253534--92253893
134
2.7
133
79
5
352
30
17
18
33
1.94
92271253--92271289
12
3.0
12
92
4
56
13
5
0
81
0.86
92271257--92271296
6
6.3
6
91
2
53
17
2
0
80
0.83
92271205--92271392
96
2.0
94
92
4
315
23
15
13
47
1.80
92271353--92271417
16
4.0
15
79
18
69
16
3
0
80
0.85
92271349--92271410
20
2.8
23
80
16
85
14
4
0
80
0.87
92271523--92271614
41
2.2
41
80
7
105
32
34
13
19
1.90
92273775--92273814
13
3.1
13
79
13
55
30
0
2
67
1.04
92281880--92281917
19
2.0
19
89
0
58
52
0
5
42
1.24
92282461--92282525
20
3.1
22
71
20
59
38
1
1
58
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92286851--92286961
17
6.5
17
72
20
72
42
3
1
52
1.29
92286867--92287001
68
2.0
69
86
1
191
40
4
3
51
1.40
92287798--92287861
31
2.1
31
100
0
128
29
35
12
21
1.91
92315221--92315533
47
6.6
45
73
13
215
24
31
17
26
1.97
92315218--92315399
96
1.9
96
85
5
249
24
31
18
24
1.97
92315229--92315533
46
6.4
48
73
15
203
24
31
17
26
1.97
92318872--92319049
27
6.6
27
83
3
205
26
15
28
29
1.96
92318873--92319028
82
1.9
81
88
3
233
26
15
28
29
1.96
92318869--92319049
82
2.2
81
83
2
229
27
15
27
29
1.96
92322062--92322095
14
2.3
14
90
10
50
41
0
2
55
1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322