genome.fa.s2.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  194  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63879850--63879938	20	4.5	20	84	2	81	30	12	10	47	1.74
63880797--63880833	18	2.1	18	100	0	74	21	21	10	45	1.82
63885824--63886055	40	5.8	40	89	1	349	27	27	22	22	1.99
63895265--63895562	40	7.5	40	96	1	519	25	27	22	24	2.00
63901221--63901260	3	14.0	3	89	5	57	27	0	2	70	1.01
63901944--63902083	39	3.6	39	92	0	226	36	22	27	14	1.92
63904004--63904065	27	2.3	27	88	0	88	37	19	24	19	1.94
63906472--63906618	74	2.0	74	94	0	258	37	8	19	35	1.81
63914774--63914933	26	6.2	26	93	0	275	32	6	24	36	1.82
63927928--63928000	27	2.8	26	79	6	85	45	5	15	34	1.69
63932679--63932718	19	2.2	19	86	4	55	2	12	5	80	0.98
63948924--63948966	21	2.0	21	100	0	86	23	30	4	41	1.74
63953790--63953996	53	3.8	53	76	3	144	19	22	17	39	1.92
63957274--63957554	27	10.6	27	94	3	480	26	14	29	29	1.95
63975274--63975321	22	2.1	24	85	14	66	39	6	0	54	1.26
63985736--63985922	27	7.0	27	86	0	250	22	13	20	43	1.86
63985736--63985922	81	2.3	81	90	0	286	22	13	20	43	1.86
63989467--63989680	27	8.0	27	79	2	216	24	14	17	42	1.87
63989996--63990071	24	3.2	24	86	0	98	23	19	11	44	1.84
63990046--63990092	18	2.6	18	80	6	51	19	19	14	46	1.84
63990667--63991532	65	13.3	65	89	2	1330	26	0	25	47	1.54
63990663--63991532	130	6.7	130	99	0	1677	26	0	25	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63991564--63991642	29	2.7	29	76	7	88	43	6	15	35	1.72
63992312--63992406	50	1.9	48	87	4	136	35	27	10	26	1.89
63992450--63992526	39	2.0	38	97	0	136	25	18	16	37	1.92
63993676--63993748	21	3.5	21	70	9	69	65	0	0	34	0.93
63993703--63993735	13	2.4	14	85	10	50	60	0	0	39	0.97
63993712--63993737	13	2.0	13	100	0	52	69	0	0	30	0.89
63994924--63995009	31	2.7	31	85	3	109	56	20	8	13	1.63
63995244--63995298	21	2.6	21	88	0	92	1	50	20	27	1.58
63995696--63995720	11	2.3	11	100	0	50	48	16	16	20	1.82
63995715--63995743	13	2.1	14	93	6	51	58	6	0	34	1.25
64000795--64000938	9	16.0	9	66	12	55	35	2	15	45	1.61
64000795--64000902	47	2.4	43	84	11	153	36	2	15	45	1.61
64000834--64000938	18	5.7	18	68	12	61	35	2	16	45	1.62
64000812--64000904	47	2.0	47	95	0	168	36	3	15	45	1.62
64001204--64001486	103	2.8	100	88	5	437	55	3	6	34	1.42
64004546--64004602	9	6.7	9	76	11	66	61	10	0	28	1.29
64004555--64004603	16	3.0	16	90	3	80	59	10	0	30	1.31
64006354--64006748	60	6.7	59	69	19	213	47	2	2	47	1.28
64006389--64006474	20	4.3	20	69	15	70	50	3	1	45	1.26
64006268--64006748	147	3.3	147	99	0	953	47	2	2	47	1.28
64006559--64006708	39	3.6	39	69	19	124	47	2	2	48	1.27
64006536--64006621	20	4.3	20	66	18	54	48	3	1	46	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64008326--64008510	79	2.3	82	84	7	238	25	27	22	24	2.00
64008307--64008510	40	5.1	40	82	8	238	25	27	22	25	2.00
64009636--64009765	57	2.3	57	90	0	197	19	20	22	38	1.93
64010218--64010271	21	2.6	21	78	0	72	53	31	1	12	1.50
64010993--64011027	17	2.0	17	88	5	52	65	14	0	20	1.26
64011170--64011530	41	8.8	41	88	2	485	17	19	25	37	1.94
64011170--64011530	163	2.2	164	88	2	530	17	19	25	37	1.94
64014053--64014101	22	2.3	20	77	16	55	46	6	2	44	1.39
64014676--64014715	20	1.9	22	85	10	57	67	5	10	17	1.37
64029378--64029499	22	5.3	22	64	21	70	26	29	11	32	1.91
64029371--64030271	47	19.1	47	95	0	1538	27	30	10	31	1.90
64039461--64039509	25	2.0	25	96	4	91	53	20	6	20	1.67
64039464--64039517	25	2.2	25	83	6	65	59	14	7	18	1.58
64055201--64055253	26	2.0	27	85	3	72	35	35	16	11	1.85
64057333--64057390	9	6.3	9	78	21	59	22	0	0	77	0.77
64057333--64057388	17	3.4	17	73	16	55	23	0	0	76	0.78
64083523--64083562	16	2.5	16	95	0	71	70	12	7	10	1.35
64084604--64084655	27	1.9	27	92	0	86	30	19	19	30	1.96
64084705--64084795	44	2.1	44	83	4	112	31	15	17	35	1.91
64085781--64085941	76	2.1	77	88	1	243	36	9	6	47	1.62
64090220--64090257	20	1.9	20	88	0	58	68	0	7	23	1.16
64091476--64091524	14	3.4	14	78	10	62	59	18	8	14	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64091471--64091531	30	2.0	30	96	0	113	55	16	11	16	1.68
64091471--64091517	14	3.2	14	77	11	58	57	14	12	14	1.66
64093395--64093619	40	5.6	40	81	7	242	25	24	26	23	2.00
64093395--64093655	80	3.3	80	81	5	287	26	23	26	24	2.00
64093395--64093655	120	2.2	121	81	6	300	26	23	26	24	2.00
64101540--64101764	40	5.6	40	80	7	224	26	23	26	24	2.00
64101540--64101800	80	3.3	79	79	6	242	26	23	25	24	2.00
64103494--64103551	21	2.7	21	81	7	64	75	0	3	20	0.94
64103510--64103549	15	2.6	15	88	4	53	80	0	2	17	0.83
64105268--64105393	29	4.4	28	87	3	171	33	25	11	29	1.92
64105268--64105393	57	2.2	57	88	2	182	33	25	11	29	1.92
64111123--64111295	46	3.7	46	81	9	194	20	21	28	28	1.98
64125799--64125832	10	3.4	10	95	0	59	64	0	8	26	1.22
64125789--64125834	10	4.6	10	89	5	58	65	2	6	26	1.28
64126189--64129147	100	30.5	100	70	14	877	40	18	14	26	1.90
64126189--64128348	101	22.3	100	74	10	1520	40	17	15	26	1.89
64126429--64129127	188	14.1	188	73	13	1547	39	18	15	26	1.90
64126741--64126904	87	1.9	87	84	2	222	40	12	16	31	1.85
64126430--64129106	389	7.0	384	74	11	1973	39	17	15	27	1.89
64126243--64128435	578	3.8	568	73	13	1189	40	17	15	27	1.89
64127512--64127853	88	3.9	88	83	7	389	41	16	15	26	1.88
64127512--64127850	175	2.0	172	81	7	409	41	16	15	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64128240--64128264	13	1.9	13	100	0	50	36	48	8	8	1.62
64128557--64128721	88	1.9	88	83	5	217	43	13	16	26	1.85
64128716--64128750	13	2.7	13	86	0	52	34	34	8	22	1.85
64130364--64130658	153	1.9	155	88	5	456	42	11	4	41	1.61
64130846--64130885	21	2.0	21	85	14	57	80	0	15	5	0.88
64131212--64134391	101	31.9	100	78	7	2746	40	18	15	26	1.89
64131206--64135082	100	39.0	100	81	6	3673	40	18	15	26	1.89
64131206--64135092	201	19.5	201	80	7	3608	40	18	14	26	1.89
64131425--64131634	110	1.9	111	85	1	287	41	18	15	24	1.89
64132401--64132430	13	2.3	13	94	0	51	40	43	6	10	1.64
64133217--64133485	88	3.1	87	75	6	249	41	15	15	27	1.88
64133975--64134004	13	2.3	13	94	0	51	40	43	6	10	1.64
64134075--64134104	13	2.3	13	94	0	51	40	43	6	10	1.64
64134175--64134204	13	2.3	13	94	0	51	40	43	6	10	1.64
64136118--64136278	42	3.7	42	80	7	144	31	24	13	30	1.94
64136157--64136366	45	4.6	45	79	11	157	30	24	15	29	1.95
64136388--64136567	31	5.8	31	85	2	254	26	26	18	28	1.98
64136543--64136714	50	3.4	50	89	0	245	27	20	15	36	1.93
64140116--64140280	82	2.0	83	96	1	305	46	12	13	27	1.79
64140466--64140513	3	15.7	3	82	4	60	58	0	4	37	1.18
64140667--64141815	101	11.6	101	79	7	1107	40	18	14	26	1.88
64140955--64141138	88	2.1	87	83	3	226	41	14	13	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64141764--64141867	52	2.0	52	98	0	199	45	10	13	30	1.77
64141816--64141986	88	1.9	87	80	9	195	41	14	15	28	1.87
64141904--64143939	101	20.7	98	76	7	1532	40	17	15	26	1.89
64142181--64142377	88	2.2	88	82	0	241	43	19	11	25	1.85
64141901--64143939	201	10.3	200	76	8	1680	40	17	15	26	1.89
64142810--64142972	87	1.9	88	79	6	188	42	16	15	24	1.87
64143283--64143452	88	1.9	87	83	4	216	40	16	13	29	1.87
64141816--64143939	388	5.4	387	76	9	1476	40	17	15	26	1.89
64143886--64143991	54	2.0	54	85	7	144	50	9	13	27	1.72
64144116--64144494	88	4.2	88	74	13	302	42	18	14	24	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322