genome.fa.s2.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  208  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68374050--68374227	27	6.6	27	83	3	205	26	15	28	29	1.96
68374051--68374206	82	1.9	81	88	3	233	26	15	28	29	1.96
68374047--68374227	82	2.2	81	83	2	229	27	15	27	29	1.96
68390731--68390817	45	1.9	45	92	0	147	24	13	25	36	1.92
68395188--68395302	42	2.7	43	81	8	137	27	28	17	26	1.97
68395222--68395314	42	2.2	42	83	9	109	30	31	15	23	1.95
68400671--68400703	15	2.2	15	100	0	66	27	6	12	54	1.60
68401255--68401391	45	3.0	45	87	2	195	23	14	25	36	1.93
68402826--68403077	53	4.8	51	79	8	188	21	24	15	37	1.93
68402870--68403077	53	3.9	54	81	7	235	22	25	16	36	1.94
68403415--68403473	30	2.0	30	83	6	75	30	25	3	40	1.72
68403784--68403824	18	2.3	18	95	0	73	65	12	7	14	1.45
68403790--68403821	9	3.4	10	83	16	50	65	9	6	18	1.42
68406185--68406237	26	2.0	26	96	0	97	37	13	15	33	1.86
68415136--68415213	34	2.3	33	82	8	95	30	21	19	28	1.97
68415147--68415213	34	2.0	35	88	11	104	29	23	19	26	1.98
68420705--68420887	40	4.6	39	84	7	190	26	27	20	25	1.99
68420703--68420887	80	2.3	78	80	8	212	27	28	20	24	1.99
68421497--68421696	104	1.9	104	100	0	400	42	22	13	23	1.88
68428000--68428222	40	5.6	39	85	3	241	26	27	20	24	1.99
68428000--68428222	120	1.9	119	81	6	272	26	27	20	24	1.99
68431013--68431215	53	3.8	53	76	3	176	36	19	24	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68444099--68444161	28	2.2	28	88	0	90	31	22	20	25	1.98
68444185--68444230	21	2.1	22	88	4	67	43	50	0	6	1.28
68444318--68444403	27	3.2	25	79	10	91	37	20	20	20	1.95
68444555--68444752	27	7.3	26	88	4	270	25	22	18	33	1.97
68462216--68462391	46	3.8	46	75	12	180	22	20	27	30	1.98
68462213--68462384	93	1.8	93	91	0	281	22	20	27	29	1.99
68470636--68470762	37	3.4	38	87	3	168	24	20	29	25	1.99
68478267--68478395	38	3.4	38	91	1	195	22	20	30	26	1.99
68483575--68483679	39	2.6	39	83	4	129	27	20	27	23	1.99
68483575--68483719	40	3.6	40	79	7	127	26	21	27	24	1.99
68483658--68483810	40	3.8	40	90	0	225	23	20	30	25	1.99
68487388--68487911	47	11.1	47	97	0	967	31	10	30	27	1.90
68488074--68488152	37	2.1	37	90	0	122	24	18	31	25	1.98
68488947--68489041	48	2.0	48	95	0	172	44	11	12	31	1.78
68490054--68490156	43	2.4	43	96	0	188	23	15	33	27	1.95
68490138--68490211	29	2.6	29	91	0	112	27	16	31	25	1.96
68490524--68490719	40	4.9	40	86	0	248	22	22	29	25	1.99
68499998--68500059	30	2.1	30	96	0	115	33	14	17	33	1.90
68513356--68513448	39	2.4	39	80	5	100	25	26	25	21	1.99
68513419--68513543	39	3.2	39	89	2	189	28	28	20	23	1.98
68528473--68528618	40	3.7	40	82	5	179	26	27	22	23	2.00
68536491--68536756	40	6.7	40	88	5	353	26	27	21	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68539950--68540096	57	2.6	57	79	9	156	29	18	22	29	1.97
68542120--68542193	29	2.6	29	84	4	87	25	31	14	28	1.95
68551580--68551757	27	6.6	27	77	6	137	30	28	15	25	1.96
68551580--68551757	54	3.3	54	78	7	164	30	28	15	25	1.96
68556006--68556100	34	3.2	34	62	35	90	41	4	38	14	1.66
68556016--68556107	31	3.2	31	66	30	94	42	4	39	13	1.63
68556004--68556114	55	2.0	54	96	3	213	39	3	41	14	1.63
68556030--68556125	26	3.6	26	68	29	76	45	2	39	11	1.52
68558102--68558231	42	3.0	41	78	9	118	20	16	28	34	1.94
68561111--68561387	150	1.8	150	100	0	554	41	12	7	38	1.72
68561383--68561445	21	2.9	22	79	11	58	63	1	0	34	1.04
68561400--68561442	22	2.0	22	86	8	63	60	0	0	39	0.97
68561426--68561463	20	2.0	20	89	5	60	73	2	0	23	0.95
68561402--68561479	21	4.3	19	67	30	55	65	1	0	33	1.01
68561376--68561476	52	1.9	53	89	2	159	63	1	0	34	1.06
68563524--68563571	24	2.0	24	88	4	71	45	8	10	35	1.68
68563586--68563752	75	2.2	76	89	5	259	36	7	8	46	1.64
68565724--68565763	20	2.0	21	85	14	57	52	5	32	10	1.56
68569973--68570026	28	1.9	28	88	0	81	24	33	27	14	1.94
68583422--68583538	60	1.9	61	87	5	175	42	2	13	41	1.58
68599576--68599625	19	2.5	20	83	3	66	58	0	24	18	1.40
68600983--68601160	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68601004--68601159	82	1.9	81	88	3	233	29	28	15	26	1.96
68624582--68624615	16	2.2	15	94	5	59	73	0	8	17	1.08
68624679--68624722	16	2.8	16	85	0	61	34	6	0	59	1.24
68625597--68625657	30	2.0	30	93	0	104	39	19	13	27	1.89
68627759--68627827	24	2.8	26	80	10	83	30	20	24	24	1.99
68631267--68631315	24	2.0	25	92	4	82	46	18	22	12	1.82
68631286--68631321	16	2.2	16	90	0	54	50	13	25	11	1.75
68631532--68631644	29	4.0	28	86	2	136	25	14	30	29	1.95
68631545--68631655	58	1.9	57	87	1	159	25	14	31	28	1.95
68637159--68637364	104	2.0	104	99	0	403	34	28	19	16	1.94
68638664--68638841	27	6.6	27	84	3	205	29	28	15	26	1.96
68638685--68638840	82	1.9	81	88	3	233	29	28	15	26	1.96
68642697--68642736	7	6.0	7	88	11	66	12	15	0	72	1.12
68642697--68642736	13	3.0	13	88	3	62	12	15	0	72	1.12
68642700--68642736	20	1.9	20	94	5	67	10	13	0	75	1.04
68643647--68643755	45	2.4	47	79	13	113	9	11	2	76	1.12
68643680--68643744	22	2.8	23	75	15	71	9	6	4	80	1.03
68647823--68647999	27	6.5	27	85	3	212	30	27	14	27	1.95
68647843--68647998	82	1.9	81	89	3	242	30	28	14	26	1.95
68656809--68656905	49	2.0	49	97	0	185	29	5	23	41	1.76
68660791--68660833	22	2.0	22	100	0	86	30	4	37	27	1.77
68664285--68664430	74	2.0	75	90	4	233	35	14	16	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68671825--68671921	30	3.2	30	75	2	106	28	26	15	28	1.96
68685755--68685803	10	4.9	10	76	0	53	26	28	16	28	1.97
68685755--68685801	20	2.3	20	92	0	76	25	29	17	27	1.97
68689801--68689849	10	4.9	10	78	9	55	26	16	30	26	1.97
68689803--68689849	20	2.3	20	89	7	69	25	17	31	25	1.97
68691678--68691724	20	2.3	20	81	0	58	23	12	34	29	1.92
68697303--68697399	30	3.2	30	72	8	99	28	16	26	27	1.97
68702962--68703058	30	3.2	30	72	2	97	27	26	16	28	1.97
68703703--68703768	21	3.0	22	86	4	80	30	4	30	34	1.78
68704098--68704297	100	2.0	100	100	0	400	33	18	21	28	1.96
68708054--68708091	16	2.4	16	87	12	60	10	7	5	76	1.15
68708051--68708104	17	3.2	16	87	10	72	9	11	5	74	1.22
68710313--68710364	15	3.5	15	86	5	61	19	7	1	71	1.20
68710663--68710725	21	3.0	21	85	2	81	31	4	30	33	1.78
68713855--68713879	13	1.9	13	100	0	50	36	16	32	16	1.90
68716493--68716549	30	1.9	30	85	7	80	15	29	0	54	1.42
68720210--68720306	30	3.2	29	72	5	95	28	14	26	29	1.95
68722564--68722594	12	2.6	12	100	0	62	25	16	12	45	1.83
68722655--68722705	6	8.2	6	81	16	59	1	19	1	76	0.98
68722642--68722711	27	2.6	26	80	6	86	2	18	2	75	1.05
68724924--68724990	15	4.5	15	74	12	57	74	5	11	7	1.20
68724912--68724994	29	2.8	29	81	7	87	72	4	14	8	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68724934--68724974	14	2.8	15	85	7	57	78	4	14	2	1.03
68745174--68745230	28	2.0	28	96	0	105	43	8	3	43	1.52
68749681--68749903	119	1.9	120	82	6	283	25	27	21	25	2.00
68749679--68749903	40	5.7	40	83	6	269	25	28	21	24	1.99
68763528--68763634	53	2.0	54	90	1	171	32	20	5	41	1.76
68777844--68777964	42	2.8	42	74	15	113	25	19	24	30	1.98
68777839--68778003	43	3.8	43	75	11	158	27	18	24	29	1.98
68781291--68781315	12	2.1	12	100	0	50	52	0	0	48	1.00
68782131--68782224	47	2.0	47	95	0	170	38	17	23	21	1.93
68782560--68782612	18	3.3	18	66	33	57	35	26	11	26	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322