Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  318  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105477428--105477479
8
6.0
8
75
16
50
28
1
3
65
1.21
105477432--105477490
18
3.3
18
80
4
66
27
1
5
66
1.22
105486872--105486968
3
32.3
3
100
0
194
32
0
0
67
0.91
105487217--105487261
23
2.0
23
82
8
56
35
8
0
55
1.31
105487148--105487250
52
2.0
51
81
11
120
30
11
0
57
1.41
105493570--105493610
21
2.0
21
100
0
82
43
4
7
43
1.53
105505283--105505322
21
1.9
21
85
10
55
42
2
0
55
1.13
105505278--105505331
25
2.0
26
82
13
65
44
1
0
53
1.11
105516592--105516673
26
3.2
26
94
0
146
31
6
25
36
1.81
105522365--105522446
26
3.2
26
94
0
146
31
6
25
36
1.81
105524161--105524196
13
2.8
14
84
16
51
27
25
0
47
1.52
105524148--105524188
18
2.2
19
87
12
59
29
24
0
46
1.53
105524374--105524430
15
3.7
16
79
9
73
49
8
1
40
1.44
105533030--105533056
11
2.5
11
100
0
54
48
0
0
51
1.00
105539486--105539525
21
2.0
20
95
5
71
70
15
10
5
1.32
105541033--105541100
23
2.9
23
74
10
66
42
4
1
51
1.31
105545643--105545813
47
3.6
47
82
4
184
30
28
16
24
1.97
105546902--105546945
22
2.0
22
100
0
88
31
27
4
36
1.77
105559774--105559800
8
3.4
8
100
0
54
48
14
0
37
1.45
105560450--105560507
28
2.1
28
93
0
98
48
3
17
31
1.64
105562240--105562372
44
3.0
44
83
4
144
33
17
20
28
1.95
105562373--105562754
94
4.1
93
76
5
308
31
16
20
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105562240--105562569
144
2.3
138
72
13
303
33
16
20
30
1.94
105562386--105562754
92
4.0
92
75
5
298
31
15
21
31
1.95
105562707--105562839
44
3.0
44
75
4
117
29
16
21
32
1.95
105563972--105564022
10
5.0
10
85
4
66
66
0
7
25
1.18
105563972--105564032
20
3.0
20
80
2
68
65
0
8
26
1.20
105564685--105564726
17
2.4
19
80
11
54
61
14
19
4
1.49
105564685--105564729
19
2.5
17
85
7
54
62
13
17
6
1.52
105568824--105568849
2
13.0
2
100
0
52
50
0
0
50
1.00
105571227--105571292
30
2.2
31
88
2
98
24
4
36
34
1.76
105572293--105572350
18
3.3
19
72
20
54
43
0
3
53
1.17
105572284--105572342
15
4.1
15
73
20
54
44
0
3
52
1.17
105572308--105572345
13
2.8
13
92
4
58
44
0
2
52
1.14
105572284--105572359
29
2.7
28
75
22
70
40
0
2
56
1.13
105574287--105574548
44
5.9
44
75
5
195
31
18
22
27
1.97
105574367--105574548
89
2.0
90
86
3
251
32
18
22
26
1.97
105588057--105588143
42
2.1
42
89
8
133
20
20
16
42
1.89
105588077--105588165
42
2.1
42
81
4
99
20
23
13
42
1.87
105599864--105599901
18
2.1
18
95
0
67
31
13
31
23
1.93
105600456--105601104
89
7.3
89
97
0
1196
34
23
9
31
1.88
105601780--105601817
15
2.4
16
82
13
51
68
0
0
31
0.90
105603649--105603697
20
2.5
20
75
0
53
65
2
8
24
1.31
105604106--105604187
41
2.0
41
95
0
146
28
10
19
41
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105606744--105606802
25
2.3
25
83
16
77
57
6
3
32
1.41
105607164--105607242
19
4.2
19
88
9
117
39
10
15
35
1.81
105607154--105607239
36
2.4
36
78
16
115
39
10
13
36
1.80
105608620--105608661
21
2.0
22
85
4
59
26
19
7
47
1.74
105608772--105609086
3
105.7
3
70
11
166
62
1
8
26
1.32
105609031--105609082
22
2.4
21
81
9
59
71
1
3
23
1.13
105609031--105609078
19
2.5
20
80
6
55
70
2
4
22
1.15
105625500--105625535
15
2.4
15
90
0
54
27
30
8
33
1.86
105629730--105629781
23
2.2
24
89
3
79
42
3
1
51
1.31
105630469--105630501
15
2.2
15
100
0
66
72
0
6
21
1.05
105640307--105640340
8
4.5
8
96
3
54
64
5
0
29
1.17
105640296--105640351
24
2.3
24
77
17
62
66
3
1
28
1.19
105640300--105640347
16
3.1
15
84
6
60
64
4
2
29
1.23
105640502--105640566
25
2.8
24
83
6
80
52
6
7
33
1.55
105640587--105640720
25
5.6
25
70
15
86
58
2
4
35
1.31
105640516--105640655
25
5.3
27
71
11
85
56
3
7
32
1.45
105641231--105641392
30
5.4
30
91
1
252
22
4
46
27
1.70
105641233--105641380
61
2.4
61
93
1
244
23
3
47
25
1.67
105642081--105642131
14
3.6
14
77
12
50
64
3
11
19
1.41
105641996--105642205
105
2.0
105
85
1
287
44
16
16
22
1.86
105642111--105642334
74
3.0
72
84
4
295
33
21
16
28
1.95
105642342--105642368
14
1.9
14
100
0
54
59
7
14
18
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105642240--105643100
239
3.9
220
72
14
647
35
19
16
28
1.94
105642390--105642497
54
2.0
55
87
1
155
38
19
13
27
1.90
105642389--105642701
128
2.4
127
84
5
389
36
20
15
27
1.93
105642576--105643303
73
9.4
73
68
16
380
32
20
16
29
1.95
105642771--105642994
74
3.0
73
86
3
315
33
21
17
28
1.96
105643001--105643028
14
2.0
14
100
0
56
57
7
21
14
1.61
105642919--105643086
92
1.8
91
87
6
250
33
19
17
28
1.95
105642576--105643231
239
2.7
239
93
0
1100
32
21
17
29
1.95
105643049--105643303
73
3.5
73
90
1
386
30
20
17
30
1.96
105643016--105643303
145
2.0
147
86
3
402
32
20
18
28
1.96
105652808--105652952
30
4.8
30
86
1
177
22
4
46
26
1.69
105653255--105653305
14
3.6
14
77
12
50
64
3
11
19
1.41
105653433--105653483
14
3.6
14
77
12
50
64
3
11
19
1.41
105653231--105653633
178
2.3
179
95
1
720
39
17
15
27
1.90
105653463--105653686
75
3.0
74
84
3
272
33
20
16
29
1.95
105653580--105653813
127
1.8
129
86
1
346
32
20
15
31
1.94
105653507--105653888
202
1.9
202
97
0
728
32
20
15
31
1.94
105653709--105653890
75
2.5
74
88
1
258
30
21
14
32
1.94
105653896--105653923
14
2.0
14
100
0
56
57
7
21
14
1.61
105653852--105654717
92
9.4
92
99
0
1723
34
18
19
27
1.95
105653988--105654015
14
2.0
14
100
0
56
57
7
21
14
1.61
105654080--105654107
14
2.0
14
100
0
56
57
7
21
14
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105654172--105654199
14
2.0
14
100
0
56
57
7
21
14
1.61
105654264--105654291
14
2.0
14
100
0
56
57
7
21
14
1.61
105654356--105654383
14
2.0
14
100
0
56
57
7
21
14
1.61
105654448--105654475
14
2.0
14
100
0
56
57
7
21
14
1.61
105654540--105654567
14
2.0
14
100
0
56
57
7
21
14
1.61
105654632--105654659
14
2.0
14
100
0
56
57
7
21
14
1.61
105654680--105654934
73
3.5
73
87
1
359
31
20
17
30
1.96
105664841--105664888
16
3.1
15
90
6
69
64
2
2
31
1.16
105664837--105664892
24
2.3
24
81
6
69
66
1
1
30
1.12
105664837--105664888
8
6.5
8
82
8
61
65
1
1
30
1.14
105665042--105665106
25
2.8
24
83
6
80
52
6
7
33
1.55
105665129--105665262
23
5.6
25
71
15
86
55
2
5
35
1.37
105665217--105665262
25
1.9
25
86
8
69
60
0
4
34
1.16
105665748--105665892
30
4.8
30
86
1
177
22
4
46
26
1.69
105669701--105669853
32
4.8
32
86
0
225
46
9
12
32
1.73
105669701--105669853
64
2.4
64
92
0
252
46
9
12
32
1.73
105671030--105671065
18
2.0
18
94
0
63
41
11
19
27
1.85
105672106--105672141
19
1.9
19
94
5
65
38
13
19
27
1.90
105672426--105672451
11
2.4
11
100
0
52
50
26
7
15
1.71
105672367--105672556
72
2.6
72
94
0
326
47
17
12
22
1.81
105675646--105675717
36
2.0
35
91
2
117
36
11
16
34
1.84
105686261--105686295
4
9.2
4
87
12
56
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105686264--105686298
10
3.3
10
92
8
52
57
0
0
42
0.99
105686268--105686305
18
2.1
18
85
9
51
63
0
0
36
0.95
105705599--105705627
3
9.7
3
100
0
58
31
0
0
68
0.89
105707402--105707447
9
5.0
9
82
15
58
67
2
0
30
1.03
105710822--105710867
23
2.0
23
87
8
67
26
0
4
69
1.07
105710844--105710877
18
1.9
17
88
5
50
32
0
0
67
0.91
105713090--105713160
27
2.6
27
91
4
108
46
9
0
43
1.37
105713556--105713621
29
2.3
28
80
10
80
48
0
4
46
1.22
105723687--105723840
53
2.9
53
98
0
290
38
19
3
38
1.68
105725132--105725202
20
3.3
21
76
19
65
80
7
7
5
1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322