genome.fa.s2.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  210  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69228206--69228275	27	2.6	27	81	4	79	37	17	18	27	1.93
69228216--69228282	26	2.5	27	83	7	84	35	20	13	29	1.91
69229689--69229728	12	3.3	12	82	0	53	30	42	0	27	1.56
69229681--69229732	24	2.2	24	85	0	68	23	50	0	26	1.50
69234517--69234564	22	2.2	22	92	0	78	20	29	35	14	1.93
69234516--69234572	22	2.5	22	80	5	69	19	31	33	15	1.93
69253543--69253660	40	3.0	40	94	0	209	22	17	29	30	1.97
69257518--69257575	23	2.5	23	94	0	98	37	20	20	20	1.94
69262688--69262739	27	2.0	26	84	3	68	17	26	21	34	1.95
69264480--69264557	29	2.7	28	80	11	95	25	14	30	29	1.94
69264510--69265533	174	5.9	174	99	0	2030	29	14	24	31	1.94
69268245--69268365	64	1.9	64	86	3	172	33	15	22	28	1.95
69277272--69277435	42	3.9	42	78	4	161	32	23	14	29	1.93
69281109--69281189	42	1.9	43	82	7	103	23	18	22	35	1.95
69281107--69281201	42	2.2	42	77	5	102	25	18	22	33	1.97
69283663--69283764	28	3.5	27	69	19	71	25	28	19	26	1.99
69283666--69283796	60	2.2	59	82	9	149	25	26	19	27	1.99
69283902--69284154	27	9.4	26	81	7	265	41	8	21	28	1.82
69283902--69284154	54	4.7	54	86	1	328	41	8	21	28	1.82
69284131--69284436	27	11.3	27	84	0	333	30	9	20	38	1.85
69283902--69284154	81	3.1	81	86	3	357	41	8	21	28	1.82
69294011--69294044	6	5.7	6	85	0	50	2	2	14	79	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69297199--69297413	119	1.8	119	89	0	340	30	17	19	32	1.95
69302711--69302852	67	2.1	67	82	5	167	30	20	28	20	1.97
69305435--69305777	40	8.6	40	91	2	476	26	27	20	24	1.99
69305709--69305786	40	1.9	41	82	10	97	26	28	21	23	1.99
69316924--69316990	34	2.0	34	82	5	82	28	20	19	31	1.97
69318399--69318449	24	2.1	24	96	0	93	33	17	5	43	1.73
69318820--69318855	19	1.9	18	88	5	54	13	41	22	22	1.89
69320589--69320989	45	8.8	45	88	1	543	26	30	17	25	1.97
69321490--69321550	31	2.0	31	87	3	88	31	24	11	32	1.91
69328645--69328828	67	2.8	64	81	8	203	23	29	17	29	1.97
69330861--69330900	11	3.5	11	83	12	53	32	2	0	65	1.06
69330870--69330894	13	1.9	13	100	0	50	40	4	0	56	1.18
69331216--69331350	67	2.0	67	86	0	189	27	19	8	45	1.78
69333945--69333972	14	2.0	14	100	0	56	28	7	28	35	1.84
69338125--69338193	20	3.2	20	67	15	57	24	13	26	36	1.92
69338116--69338204	44	2.0	44	93	0	151	26	13	23	35	1.92
69343754--69343802	24	2.0	24	96	0	89	30	18	26	24	1.98
69350166--69350304	48	2.9	48	86	0	152	24	22	26	26	2.00
69352610--69352647	14	2.4	16	79	20	53	50	7	15	26	1.72
69355795--69355875	40	2.0	40	88	4	119	27	27	20	24	1.99
69374574--69374726	79	1.9	80	82	6	195	26	26	22	24	2.00
69374527--69374732	40	5.2	40	79	8	215	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69375000--69375182	79	2.3	81	82	7	214	26	26	21	25	2.00
69374275--69375182	452	2.0	452	97	0	1719	30	25	16	27	1.97
69374979--69375182	40	5.1	40	79	8	220	25	26	21	25	2.00
69375101--69375506	203	2.0	203	98	0	776	32	26	13	27	1.94
69375686--69375988	152	2.0	151	98	0	579	38	19	10	31	1.85
69376280--69376616	169	2.0	169	98	0	647	31	25	9	32	1.88
69376955--69377453	250	2.0	250	97	1	948	23	27	9	39	1.86
69380297--69380322	13	2.0	13	100	0	52	46	15	0	38	1.46
69383301--69383368	20	3.2	20	67	15	55	23	13	25	38	1.91
69383292--69383381	44	2.0	44	93	0	153	26	14	22	36	1.92
69387675--69387937	45	5.9	45	83	5	293	26	28	21	23	1.99
69387930--69388053	38	3.3	38	86	2	178	33	23	20	22	1.97
69392248--69392295	24	2.0	24	84	8	62	45	2	8	43	1.45
69397756--69397921	48	3.5	48	82	8	198	29	21	25	22	1.99
69399754--69399792	20	2.0	20	84	0	51	30	5	17	46	1.70
69402955--69402997	2	22.0	2	90	4	70	0	48	0	51	1.00
69404220--69404247	2	14.0	2	100	0	56	50	0	50	0	1.00
69413083--69413137	28	1.9	29	88	3	85	9	21	49	20	1.76
69413633--69413712	42	1.9	42	84	0	106	30	25	27	17	1.97
69418525--69418582	30	1.9	30	93	6	100	15	29	34	20	1.94
69431910--69432087	27	6.6	27	84	3	205	29	28	15	26	1.96
69431931--69432086	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69438124--69438163	20	2.0	20	100	0	80	30	20	25	25	1.99
69439563--69439691	58	2.2	58	75	6	138	33	17	21	27	1.96
69442578--69442700	25	5.0	25	73	12	112	23	25	22	28	1.99
69442578--69442724	49	3.0	49	83	1	186	25	23	21	29	1.99
69445443--69445602	39	4.1	39	91	0	248	22	24	29	23	1.99
69448529--69448624	26	3.8	25	86	2	113	26	23	21	28	1.99
69448539--69448637	25	3.9	26	79	11	75	26	23	21	29	1.99
69448844--69448927	31	2.8	31	87	3	118	33	14	26	26	1.94
69451933--69452193	40	6.6	40	84	3	312	25	22	25	26	2.00
69451933--69452193	120	2.2	119	86	4	355	25	22	25	26	2.00
69452397--69452458	28	2.2	28	97	2	115	37	3	24	35	1.72
69452449--69452490	22	1.9	22	85	9	59	33	9	14	42	1.78
69459953--69460000	25	1.9	25	86	0	69	31	22	16	29	1.96
69460132--69460227	26	3.8	26	91	2	126	26	23	22	27	2.00
69460451--69460531	31	2.6	31	96	0	144	30	18	25	24	1.98
69462194--69462257	29	2.2	29	91	0	101	21	20	35	21	1.96
69468034--69468063	12	2.6	11	90	10	51	73	6	13	6	1.24
69468703--69468740	20	1.9	20	100	0	76	31	7	28	31	1.86
69475080--69475144	28	2.3	28	91	0	103	32	27	9	30	1.88
69475250--69475339	28	3.2	27	85	7	119	20	24	23	32	1.98
69475250--69475364	55	2.1	56	83	8	146	19	24	21	34	1.96
69475804--69475842	19	2.1	19	85	0	51	15	5	7	71	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69477334--69477365	10	3.2	10	95	0	55	56	25	0	18	1.42
69477326--69477378	20	2.7	20	79	5	63	49	22	1	26	1.60
69479519--69479586	30	2.3	30	92	5	111	23	32	27	16	1.96
69487112--69487242	47	2.8	47	87	2	174	32	27	16	23	1.96
69487788--69487829	13	2.9	14	76	16	50	28	23	0	47	1.52
69490914--69490959	20	2.3	21	82	14	62	26	17	28	28	1.98
69492666--69492697	16	2.0	16	93	0	55	65	6	6	21	1.38
69498017--69498168	27	5.6	26	76	5	108	36	22	11	30	1.89
69498031--69498133	54	1.9	54	83	0	134	33	23	10	33	1.89
69498153--69498240	27	3.3	27	88	0	122	35	19	19	26	1.95
69498443--69498512	25	2.8	25	89	6	106	27	24	21	27	1.99
69498442--69498525	25	3.4	24	82	8	89	29	21	21	27	1.98
69498443--69498537	50	1.9	50	80	8	113	28	23	22	26	1.99
69504887--69504977	45	2.0	45	93	0	155	36	3	24	36	1.72
69505617--69505729	56	2.0	56	92	0	190	28	12	24	34	1.92
69508041--69508073	16	2.1	16	94	0	57	6	33	6	54	1.50
69512519--69512576	23	2.5	23	83	5	64	36	20	22	20	1.95
69513961--69514223	40	6.6	40	87	3	309	26	28	20	23	1.99
69526232--69526632	53	7.6	53	75	13	344	24	24	17	34	1.96
69526232--69526623	108	3.7	106	86	4	467	23	24	17	34	1.96
69526513--69526688	47	3.6	47	72	15	167	25	22	14	36	1.93
69526244--69526688	101	4.3	101	86	5	432	24	24	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69532722--69532767	6	7.3	6	85	4	56	76	0	4	19	0.96
69540201--69540240	13	3.1	13	88	0	62	15	35	30	20	1.93
69548096--69548401	53	5.6	54	80	9	354	23	24	17	33	1.96
69548096--69548389	108	2.7	108	92	1	480	23	24	18	33	1.97
69553144--69553245	39	2.6	39	83	10	127	26	12	24	36	1.91
69553225--69553331	41	2.5	42	82	7	128	24	14	28	33	1.94
69557614--69557716	54	1.9	54	82	7	129	26	8	28	36	1.86
69561119--69561236	43	2.8	42	77	7	139	22	16	27	32	1.96
69570027--69570181	40	3.9	40	91	0	240	21	28	23	26	1.99
69578039--69578259	40	5.6	40	90	2	304	20	26	25	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322