Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  116  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37770117--37770157
21
2.0
21
100
0
82
0
53
19
26
1.45
37771353--37771413
30
2.0
30
90
0
95
40
14
16
27
1.88
37774136--37774178
22
2.0
22
86
9
61
48
30
0
20
1.50
37774327--37774431
7
15.1
7
70
15
58
36
42
0
20
1.53
37774359--37774431
21
3.5
20
75
14
69
34
47
0
17
1.48
37774449--37774500
14
3.6
15
82
7
72
48
23
1
26
1.62
37774819--37774866
22
2.1
22
84
3
60
25
0
25
50
1.50
37774908--37775168
41
6.4
41
91
0
362
22
22
22
32
1.98
37775543--37775579
19
1.9
19
100
0
74
40
10
16
32
1.83
37777318--37777641
165
2.0
165
91
0
531
32
14
22
30
1.94
37785367--37785410
7
6.1
7
83
2
52
36
0
50
13
1.42
37785368--37785409
21
2.0
22
85
4
59
38
0
47
14
1.44
37790042--37790123
39
2.1
39
97
0
155
32
18
12
36
1.88
37794906--37795019
43
2.7
43
80
5
115
28
19
21
29
1.98
37798255--37798310
27
2.1
27
83
6
69
16
3
1
78
0.97
37798265--37798318
28
2.0
27
82
10
65
11
5
1
81
0.93
37798958--37798997
21
1.9
21
84
0
53
15
30
35
20
1.93
37804088--37804134
17
2.7
17
90
3
58
23
6
8
61
1.48
37804096--37804134
17
2.3
17
95
0
69
20
5
10
64
1.44
37804807--37805012
103
2.0
103
99
0
403
33
27
7
31
1.85
37825402--37825470
15
4.6
15
83
0
84
11
17
13
57
1.64
37825393--37825480
30
3.0
30
81
8
99
10
17
15
56
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37827874--37828046
46
3.7
46
78
13
210
21
21
27
28
1.99
37827871--37828041
93
1.8
93
96
0
315
21
21
28
28
1.99
37832048--37832205
43
3.7
43
74
13
155
24
18
26
29
1.98
37835870--37835973
27
3.9
26
75
9
93
37
19
15
27
1.92
37835870--37835967
26
3.7
26
76
9
90
37
17
16
28
1.91
37835966--37836060
26
3.6
27
81
5
113
38
23
9
28
1.86
37836037--37836105
26
2.6
26
81
4
77
37
21
10
30
1.87
37836009--37836261
27
9.5
26
74
6
107
39
19
10
30
1.85
37836511--37836629
41
2.9
41
91
0
193
22
24
28
24
1.99
37837601--37837647
16
2.7
17
80
12
51
34
21
8
36
1.84
37838531--37838601
35
2.0
35
88
0
106
29
22
11
36
1.89
37840508--37840631
48
2.6
48
84
0
158
29
19
25
25
1.98
37858822--37858851
14
2.1
14
100
0
60
50
0
30
20
1.49
37864303--37864585
94
3.0
94
96
0
530
32
23
18
25
1.97
37864331--37864622
94
3.1
93
87
5
278
33
22
17
27
1.96
37873995--37874339
27
12.8
27
80
6
342
30
22
7
39
1.82
37873995--37874339
81
4.3
80
86
3
413
30
22
7
39
1.82
37874331--37874467
54
2.5
54
87
0
202
33
16
21
28
1.95
37874331--37874467
27
5.1
27
87
3
168
33
16
21
28
1.95
37874709--37874798
27
3.3
28
81
10
105
20
18
21
40
1.92
37874714--37874808
27
3.5
28
81
11
97
21
21
21
36
1.95
37882019--37883455
718
2.0
718
100
0
2874
39
13
17
30
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37889253--37889290
19
2.0
19
85
10
51
7
26
18
47
1.76
37889503--37889578
40
1.9
40
94
0
134
32
30
15
21
1.94
37889832--37889877
18
2.6
18
89
3
67
36
13
4
45
1.63
37897191--37897219
7
4.1
7
100
0
58
13
13
0
72
1.13
37898060--37898096
18
2.1
18
89
0
56
16
21
18
43
1.88
37899033--37899147
55
2.1
54
81
1
140
21
28
26
22
1.99
37900438--37900613
46
3.8
46
79
12
216
20
21
29
28
1.98
37900435--37900606
93
1.8
93
96
0
317
20
21
29
27
1.98
37904862--37904890
15
1.9
15
100
0
58
31
20
6
41
1.79
37906550--37906700
65
2.3
65
87
4
223
20
23
24
31
1.98
37915252--37915278
13
2.1
13
100
0
54
14
0
14
70
1.17
37917399--37917642
121
2.0
121
100
0
488
31
9
15
43
1.78
37918282--37918306
13
1.9
13
100
0
50
28
24
32
16
1.96
37921671--37921697
13
2.1
13
100
0
54
33
22
29
14
1.94
37922645--37922672
13
2.2
13
100
0
56
32
25
28
14
1.94
37924462--37924771
87
3.6
86
83
7
335
39
16
10
33
1.83
37928137--37928166
10
2.8
11
90
10
53
56
0
0
43
0.99
37928381--37928512
19
6.8
19
71
13
74
31
7
2
59
1.38
37928411--37928559
28
5.1
29
72
12
92
33
6
2
58
1.34
37928516--37928591
19
4.1
18
75
11
64
31
1
1
65
1.09
37928438--37928580
9
15.0
9
67
20
60
34
4
1
60
1.25
37928666--37928846
90
2.1
88
82
9
219
35
9
14
39
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37932932--37932977
22
2.1
22
84
15
60
41
0
0
58
0.98
37933777--37933864
33
2.6
35
73
19
89
44
2
1
52
1.21
37934059--37934122
13
4.9
13
80
0
83
37
26
7
28
1.84
37937054--37937081
12
2.3
12
100
0
56
35
0
0
64
0.94
37956453--37956625
46
3.7
46
79
13
210
21
20
28
29
1.98
37956450--37956620
93
1.8
93
94
0
306
21
21
29
28
1.98
37964447--37964490
9
5.0
9
77
5
54
25
2
0
72
0.96
37965206--37965230
6
4.2
6
100
0
50
16
0
0
84
0.63
37969111--37969157
21
2.2
21
85
14
62
0
29
0
70
0.88
37969111--37969150
20
1.9
22
90
10
66
0
30
0
70
0.88
37969200--37969247
19
2.5
18
77
12
51
35
4
0
60
1.16
37979081--37979114
15
2.3
15
89
0
50
26
26
2
44
1.69
37979234--37979535
77
3.9
77
90
0
462
46
1
14
36
1.57
37983063--37983216
43
3.7
43
79
6
145
26
25
16
31
1.96
37986612--37986654
23
1.9
23
90
4
70
51
11
4
32
1.59
37991705--37991757
19
3.0
17
73
10
52
35
20
9
33
1.85
37991675--37991733
23
2.6
22
89
5
91
42
18
1
37
1.61
37994012--37994306
144
2.0
144
98
0
563
28
15
16
38
1.90
37996128--37996152
12
2.1
12
100
0
50
84
0
0
16
0.63
38002139--38002198
30
2.0
30
90
0
93
26
1
13
58
1.45
38005592--38005652
29
2.1
29
96
0
113
31
19
8
40
1.81
38016462--38016537
21
3.6
22
75
8
61
34
19
22
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38019109--38019140
11
2.9
11
90
0
55
31
3
46
18
1.65
38021987--38022133
18
8.2
18
88
3
215
31
15
24
28
1.96
38022666--38022708
11
4.0
11
84
3
61
30
2
46
20
1.63
38022666--38022708
21
2.0
21
90
4
68
30
2
46
20
1.63
38041682--38041736
19
2.9
19
72
5
58
61
0
0
38
0.96
38043346--38043400
19
2.9
19
72
5
58
61
0
0
38
0.96
38043683--38043771
29
3.1
29
85
3
108
37
20
13
29
1.91
38047438--38047480
22
2.0
22
86
9
61
51
16
6
25
1.69
38047744--38047769
12
2.2
12
100
0
52
7
15
30
46
1.74
38047824--38048043
41
5.4
41
88
0
325
33
18
25
22
1.97
38048117--38048160
21
2.0
22
91
4
72
18
0
38
43
1.50
38048149--38048175
7
3.9
7
100
0
54
14
0
55
29
1.40
38048397--38048440
21
2.1
21
91
0
70
29
2
34
34
1.70
38056402--38056447
20
2.2
21
88
3
67
28
0
4
67
1.10
38057213--38057265
19
2.8
20
82
8
74
58
1
0
39
1.09
38057216--38057274
25
2.4
25
85
5
75
61
1
0
37
1.07
38057216--38057266
13
4.0
13
77
10
52
62
1
0
35
1.06
38057216--38057281
25
2.6
25
81
9
73
59
4
0
36
1.18
38060502--38060598
3
32.3
3
69
8
63
28
7
2
61
1.34
38061006--38061324
126
2.5
126
78
4
322
27
16
20
35
1.94
38067690--38067814
64
2.0
64
96
0
232
28
14
24
33
1.94
38082165--38082291
64
2.0
64
89
3
193
31
19
14
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38082392--38083347
178
5.4
178
90
0
1428
30
18
22
28
1.98
38085113--38085146
3
11.3
3
100
0
68
32
0
0
67
0.91
38085522--38085841
126
2.5
126
81
3
349
26
16
21
35
1.95
38087956--38088088
49
2.8
46
76
10
126
23
29
15
31
1.95
38088719--38088757
20
2.0
20
85
10
53
35
20
0
43
1.52
38091325--38091377
24
2.2
25
86
10
83
28
18
7
45
1.77
38091332--38091380
24
2.0
24
96
0
89
24
18
10
46
1.79
38094180--38094223
23
1.9
23
85
0
61
36
9
4
50
1.55
38097353--38097406
5
10.8
5
95
0
99
38
1
0
59
1.08
38105143--38105211
31
2.2
31
84
5
86
34
8
8
47
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322