genome.fa.s2.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  219  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72416108--72416162	27	2.0	27	100	0	110	56	7	0	36	1.27
72436735--72436880	69	2.1	69	79	5	152	30	19	24	26	1.98
72436926--72436974	20	2.5	20	93	0	80	38	24	2	34	1.67
72440060--72440117	24	2.4	24	97	0	107	48	29	3	18	1.65
72440781--72440916	29	4.7	29	79	7	150	22	28	11	36	1.90
72440772--72440938	87	1.9	88	91	1	273	22	28	14	35	1.93
72440812--72440938	29	4.4	29	78	5	105	23	29	12	33	1.92
72444361--72444536	40	4.4	40	84	4	203	22	23	27	27	1.99
72444361--72444536	80	2.2	80	87	0	262	22	23	27	27	1.99
72452812--72452920	6	17.8	6	66	14	53	48	13	18	19	1.81
72452833--72452919	37	2.4	37	90	0	129	48	13	18	19	1.81
72452864--72452930	31	2.2	31	86	0	89	47	11	19	20	1.81
72453111--72453285	67	2.6	67	89	0	269	31	21	29	17	1.96
72453503--72453720	27	8.1	27	83	2	267	39	5	23	30	1.79
72453503--72453720	81	2.7	81	84	2	294	39	5	23	30	1.79
72453729--72453798	27	2.6	27	88	0	95	28	22	15	32	1.95
72455632--72455706	6	12.3	6	78	13	82	49	13	18	18	1.79
72455638--72455740	37	2.8	38	85	4	129	48	11	19	20	1.79
72455641--72455758	37	3.4	35	74	17	111	50	11	18	19	1.78
72455653--72455758	31	3.2	31	75	12	88	49	12	18	19	1.79
72455881--72455938	27	2.2	26	84	3	71	34	20	24	20	1.97
72455908--72456087	67	2.6	67	86	3	216	32	19	27	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72455941--72456090	67	2.2	67	91	0	237	32	19	28	20	1.97
72456312--72456530	27	8.1	27	82	0	258	42	7	21	28	1.80
72456312--72456534	81	2.7	81	85	0	302	42	7	21	28	1.80
72456317--72456534	54	4.0	54	86	4	305	42	7	21	29	1.79
72461595--72461796	55	3.7	53	77	13	189	35	17	23	22	1.95
72461596--72461794	108	1.8	110	87	6	298	36	17	24	22	1.95
72461587--72461841	55	4.8	52	78	10	180	37	17	23	21	1.94
72469290--72469464	40	4.4	39	81	5	167	22	21	28	26	1.99
72472182--72472436	55	4.8	54	80	10	280	35	16	25	21	1.95
72472189--72472389	108	1.8	110	89	4	318	34	17	25	22	1.96
72472605--72472635	16	1.9	16	93	0	53	41	0	22	35	1.54
72479392--72479599	55	3.8	53	81	7	249	35	17	25	22	1.95
72479399--72479599	108	1.8	110	89	4	318	34	17	24	22	1.96
72489408--72489639	55	4.4	52	77	9	213	37	17	22	22	1.94
72489854--72489884	16	1.9	16	93	0	53	41	0	22	35	1.54
72494452--72494485	15	2.3	15	90	5	52	50	2	17	29	1.61
72496065--72496161	25	3.9	25	76	0	95	32	26	15	24	1.95
72496106--72496174	25	2.8	25	86	4	95	33	30	15	20	1.94
72496367--72496413	13	3.6	13	73	21	53	34	2	27	36	1.69
72496364--72496417	26	2.1	26	96	0	99	37	3	24	35	1.73
72499449--72499522	35	2.1	35	100	0	148	39	8	25	27	1.84
72500415--72500451	16	2.3	16	90	0	56	62	8	8	21	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72514895--72515046	40	3.8	40	96	0	268	25	21	29	23	1.99
72514895--72515066	80	2.2	80	90	1	265	24	20	29	25	1.99
72519887--72520064	27	6.6	27	83	3	205	26	15	28	29	1.96
72519888--72520043	82	1.9	81	88	3	233	26	15	28	29	1.96
72519884--72520064	82	2.2	81	83	2	229	27	15	27	29	1.96
72527950--72528127	27	6.6	27	83	3	205	26	15	28	29	1.96
72527951--72528106	82	1.9	81	88	3	233	26	15	28	29	1.96
72527947--72528127	82	2.2	81	83	2	229	27	15	27	29	1.96
72533142--72533240	28	3.5	29	86	4	114	30	28	14	27	1.95
72533688--72533713	12	2.2	12	100	0	52	42	0	7	50	1.31
72544002--72544269	46	5.7	49	75	13	160	22	28	19	29	1.98
72544099--72544274	46	3.8	47	79	5	180	21	29	20	28	1.98
72544099--72544274	94	1.9	92	83	6	230	21	29	20	28	1.98
72547442--72547601	86	1.9	85	84	3	214	28	26	19	25	1.99
72552075--72552148	31	2.4	31	95	2	132	27	28	16	28	1.97
72552361--72552412	25	2.1	25	92	3	88	26	19	21	32	1.97
72552368--72552425	25	2.3	25	93	0	98	25	20	29	24	1.99
72553365--72553462	27	3.6	27	81	13	110	33	9	17	39	1.81
72561015--72561088	31	2.4	31	95	2	132	27	28	16	28	1.97
72561301--72561352	25	2.1	25	92	3	88	26	19	21	32	1.97
72561308--72561365	25	2.3	25	93	0	98	25	20	29	24	1.99
72562187--72562264	27	2.9	27	79	11	88	20	20	21	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72562368--72562492	27	4.6	27	78	5	126	25	6	21	46	1.75
72562309--72562468	56	2.9	55	78	3	160	29	6	18	45	1.75
72562513--72562615	27	3.8	25	82	6	98	39	6	22	31	1.80
72562528--72562615	27	3.3	27	86	0	122	39	6	25	28	1.81
72566077--72566137	30	2.0	30	83	0	77	32	22	6	37	1.80
72568027--72568290	40	6.7	40	89	5	360	25	27	21	25	1.99
72580742--72580792	26	2.0	26	100	0	102	27	27	21	23	1.99
72582115--72582159	21	2.2	20	88	11	65	28	22	28	20	1.98
72582329--72582383	27	2.0	27	96	0	101	27	29	18	25	1.98
72582931--72583069	46	3.0	46	78	10	147	24	30	15	28	1.96
72582931--72583027	48	2.1	46	86	7	133	24	35	13	26	1.93
72582940--72583065	47	2.7	45	80	11	121	24	30	16	28	1.97
72585137--72585235	35	2.8	35	81	3	110	29	18	14	38	1.90
72593304--72593425	43	2.9	42	73	7	138	27	22	15	34	1.94
72594509--72594534	13	2.0	13	100	0	52	53	15	0	30	1.42
72596731--72596887	40	4.0	40	87	4	219	24	18	26	30	1.98
72604864--72604893	11	2.6	11	94	5	51	0	13	0	86	0.57
72604934--72604971	13	2.8	14	88	4	51	73	2	2	21	1.07
72606636--72606687	20	2.6	20	84	0	77	11	26	36	25	1.90
72609104--72609199	24	4.0	24	86	6	133	29	22	20	27	1.99
72609125--72609197	23	3.1	23	92	2	119	30	21	20	27	1.98
72609248--72609313	20	3.3	20	82	4	89	33	21	10	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72609350--72609397	25	1.9	25	86	0	69	25	16	25	33	1.96
72611530--72611693	40	4.1	40	94	0	283	25	29	23	21	1.99
72620254--72620317	31	2.1	31	90	0	101	25	23	15	35	1.94
72620525--72620606	24	3.4	24	88	5	112	31	20	17	30	1.95
72620657--72620721	20	3.2	20	88	0	103	32	24	12	30	1.92
72620758--72620805	25	1.9	25	86	0	69	25	16	25	33	1.96
72623034--72623098	28	2.3	28	92	5	105	33	29	7	29	1.85
72623204--72623293	27	3.2	27	78	7	83	20	24	22	33	1.97
72623214--72623276	27	2.3	28	86	2	92	22	30	19	28	1.98
72623214--72623304	27	3.2	28	78	10	80	21	27	18	31	1.97
72628266--72628378	47	2.4	47	86	2	156	27	30	8	33	1.87
72629333--72629440	49	2.2	49	95	3	193	30	28	7	33	1.85
72631436--72631521	43	2.0	43	100	0	172	41	13	9	34	1.77
72632543--72633706	40	28.9	40	94	1	1988	25	27	22	25	2.00
72638361--72638571	40	5.3	40	90	2	311	27	26	20	26	1.99
72638363--72638619	79	3.2	80	83	10	309	26	26	20	26	1.99
72639703--72639727	12	2.1	12	100	0	50	0	16	0	84	0.63
72642507--72642772	48	5.5	48	76	10	238	24	26	19	29	1.98
72642507--72642870	96	3.8	95	80	5	299	23	27	18	29	1.98
72642497--72642876	144	2.6	143	79	5	374	24	27	18	30	1.98
72642551--72642870	48	6.7	46	75	8	198	24	27	18	29	1.98
72642604--72642878	48	5.8	47	74	7	214	25	28	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72645687--72645765	37	2.1	37	90	0	122	25	31	18	24	1.98
72645884--72646334	47	9.6	47	96	0	794	29	29	8	32	1.87
72649021--72649217	40	4.9	40	82	0	232	25	28	21	23	1.99
72649021--72649258	80	3.0	80	81	4	214	25	28	21	24	1.99
72649600--72649673	29	2.6	28	87	8	96	27	31	16	25	1.96
72649659--72649929	43	6.3	43	99	0	533	27	34	14	23	1.94
72650832--72651096	47	5.6	47	98	0	485	29	28	9	33	1.88
72650933--72651055	22	5.3	22	62	11	66	29	27	9	33	1.89
72660154--72660204	25	2.0	25	92	0	84	54	11	23	9	1.66
72665448--72665500	24	2.1	26	93	6	92	33	28	11	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322