genome.fa.s2.2.7.7.80.10.50.1000.301.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  301  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99958213--99958291	39	2.0	39	100	0	158	48	6	20	25	1.73
99962056--99962187	40	3.3	40	78	7	117	28	25	20	26	1.99
99964482--99964703	67	3.4	65	74	11	211	24	28	14	32	1.94
99970486--99970685	108	1.8	109	86	3	287	21	25	18	34	1.96
99977922--99978096	40	4.4	40	92	0	287	21	17	29	31	1.96
99993135--99993312	27	6.6	26	80	7	169	27	15	27	29	1.96
99993132--99993312	82	2.2	81	81	2	211	27	16	27	29	1.97
99993217--99993323	27	3.9	27	85	1	70	26	14	28	30	1.95
100001170--100001347	27	6.6	26	82	6	169	26	15	27	29	1.96
100001171--100001326	82	1.9	81	85	3	215	26	16	27	29	1.96
100001167--100001347	82	2.2	81	81	2	211	27	16	27	29	1.96
100001252--100001358	27	3.9	27	85	1	70	26	14	28	30	1.95
100003169--100003345	79	2.2	80	81	7	200	24	20	29	25	1.99
100003166--100003350	40	4.7	40	80	6	207	23	21	28	26	1.99
100003203--100003383	79	2.3	78	77	12	190	26	19	27	26	1.99
100028063--100028141	40	2.0	41	89	2	124	26	20	27	25	1.99
100036371--100036421	10	5.0	10	79	9	50	3	19	17	58	1.54
100040560--100040633	33	2.2	34	88	4	107	32	6	18	41	1.77
100047792--100047978	57	3.3	55	80	8	189	31	18	17	32	1.94
100053068--100053125	30	1.9	30	82	6	73	34	13	25	25	1.93
100056247--100056467	46	4.7	46	77	7	142	27	17	31	23	1.97
100056297--100056467	93	1.8	95	82	9	226	28	18	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100075398--100075452	29	1.9	29	85	3	76	23	23	30	21	1.99
100076925--100076982	29	2.0	29	96	0	107	27	13	25	32	1.94
100091000--100091310	49	6.6	49	71	9	175	28	18	27	25	1.98
100095509--100095585	39	2.0	39	92	0	127	32	7	23	36	1.83
100109017--100109188	40	4.3	40	87	2	213	25	28	21	24	1.99
100109017--100109241	80	2.8	79	80	7	231	25	28	21	24	1.99
100109173--100109250	40	1.9	41	82	10	97	26	28	20	24	1.99
100119008--100119059	24	2.3	23	87	9	79	34	21	25	19	1.96
100119013--100119058	24	1.9	24	95	0	83	34	21	23	19	1.96
100122531--100122677	73	2.0	73	90	2	233	37	12	13	36	1.82
100123543--100123638	50	1.9	50	93	4	167	48	7	11	32	1.66
100125937--100125970	16	2.2	15	89	5	50	14	0	5	79	0.91
100126798--100126836	20	2.0	20	85	5	53	46	2	2	48	1.29
100128460--100129317	46	18.6	46	98	0	1637	25	28	17	28	1.97
100136340--100136495	38	4.1	38	91	0	249	21	22	23	32	1.98
100137535--100137634	50	2.0	50	100	0	200	32	8	38	22	1.83
100138772--100138921	55	2.8	54	80	4	149	26	15	29	28	1.96
100138744--100138921	27	6.6	27	77	6	146	25	15	28	30	1.96
100138745--100138900	82	1.9	81	81	6	190	25	16	28	30	1.96
100139882--100140010	65	2.0	65	95	0	231	31	23	16	29	1.96
100141120--100141420	151	2.0	151	96	0	548	36	10	30	22	1.88
100147126--100147303	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100147126--100147400	54	5.3	55	72	15	215	26	14	28	30	1.95
100147127--100147282	82	1.9	81	88	3	233	26	15	28	29	1.96
100147123--100147303	82	2.2	81	83	2	229	27	15	27	29	1.96
100147321--100147400	27	3.0	27	88	0	115	23	12	28	35	1.91
100147220--100147410	97	2.0	97	96	0	355	25	14	27	32	1.94
100154975--100155072	27	3.5	28	88	5	128	32	28	13	25	1.93
100159843--100159909	20	3.3	20	91	0	107	32	11	22	32	1.90
100159958--100160101	24	6.0	24	88	2	200	30	21	20	27	1.98
100162793--100162872	39	2.1	39	92	0	133	26	22	23	27	2.00
100168113--100168375	54	4.9	54	79	4	269	42	20	8	29	1.81
100168113--100168380	81	3.3	80	77	7	281	42	19	8	29	1.80
100168113--100168380	27	9.9	26	82	4	230	42	19	8	29	1.80
100168379--100168449	27	2.6	27	77	8	72	40	19	8	30	1.81
100168312--100168447	73	1.9	72	81	7	168	43	18	8	30	1.79
100168410--100168476	27	2.5	27	82	0	80	35	20	11	31	1.89
100168539--100168569	14	2.2	14	100	0	62	35	19	16	29	1.93
100170467--100170558	39	2.4	39	94	0	157	26	30	23	19	1.98
100171959--100172110	40	3.8	40	88	2	198	25	27	21	25	1.99
100180158--100180383	40	5.7	40	98	0	425	30	26	20	22	1.98
100187459--100187523	28	2.3	28	94	0	112	33	27	7	30	1.85
100187629--100187718	28	3.2	27	84	7	110	20	23	23	33	1.97
100189111--100189291	40	4.6	40	81	11	189	24	27	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100189111--100189291	79	2.3	81	81	12	207	24	27	21	26	1.99
100191940--100191973	10	3.3	10	84	8	50	29	8	8	52	1.62
100198105--100198135	8	3.9	8	91	0	53	48	25	22	3	1.66
100198383--100198447	28	2.3	28	94	0	112	33	27	7	30	1.85
100198553--100198641	28	3.2	27	84	7	108	20	23	22	33	1.97
100198553--100198667	55	2.1	56	80	8	128	20	23	20	35	1.96
100201924--100202803	39	22.6	39	99	0	1681	20	26	27	25	1.99
100205750--100205809	30	2.0	30	86	0	84	33	25	5	36	1.78
100208825--100209043	48	4.6	48	94	0	375	34	6	26	31	1.82
100209085--100209261	88	2.0	88	100	0	354	36	6	23	33	1.81
100216347--100216384	19	2.0	20	85	15	53	39	23	0	36	1.55
100218765--100218887	41	3.0	41	87	0	183	17	22	32	26	1.97
100219027--100219091	22	3.0	22	80	8	69	21	23	21	33	1.97
100221861--100222105	51	4.8	51	86	1	321	31	25	13	30	1.94
100222131--100222249	52	2.3	52	94	0	211	25	23	15	35	1.95
100222131--100222246	24	4.4	27	81	15	154	25	24	15	35	1.94
100224925--100225150	40	5.7	40	87	4	271	26	21	26	26	2.00
100233026--100233251	40	5.7	40	86	4	271	25	22	25	26	2.00
100236553--100236624	28	2.6	28	86	0	99	30	30	13	25	1.94
100241322--100241504	27	6.8	27	87	0	249	38	8	22	30	1.83
100243973--100244213	27	8.9	27	85	1	286	40	6	20	32	1.79
100243994--100244204	107	2.0	108	87	5	311	40	7	20	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100247216--100247272	24	2.4	25	79	8	64	52	7	31	8	1.59
100257295--100257568	27	10.1	27	80	1	262	25	16	19	38	1.92
100260604--100260664	30	2.0	30	87	0	86	31	24	6	37	1.81
100261781--100261819	19	2.0	20	85	5	53	15	0	23	61	1.33
100266171--100266474	47	6.4	47	91	1	437	27	29	8	34	1.86
100272455--100272701	40	6.2	40	75	13	210	23	22	27	26	1.99
100272494--100272678	79	2.3	80	87	0	255	23	22	27	27	1.99
100272495--100272701	79	2.6	80	83	5	233	23	22	27	26	1.99
100290142--100290319	27	6.6	27	82	3	178	29	28	15	26	1.96
100290163--100290318	82	1.9	81	86	3	224	28	28	16	26	1.97
100290142--100290318	54	3.3	54	81	6	196	29	28	15	26	1.96
100292696--100292740	23	2.0	23	95	0	81	48	8	13	28	1.72
100300873--100300967	47	2.0	47	97	0	181	37	11	31	18	1.87
100301052--100301148	48	2.0	48	91	0	158	31	20	24	22	1.98
100306134--100306309	46	3.8	46	79	12	216	20	21	29	28	1.98
100306131--100306302	93	1.8	93	96	0	317	20	21	29	27	1.98
100308028--100308260	39	6.0	39	90	0	358	22	24	28	24	2.00
100315714--100316422	47	15.0	47	91	1	1013	31	9	30	28	1.89
100322315--100322386	36	2.0	36	97	0	135	26	30	23	19	1.98
100327443--100327569	64	2.0	63	88	0	182	23	6	42	26	1.78
100331377--100331530	47	3.3	47	91	0	245	32	12	29	25	1.92
100331504--100331640	46	3.0	46	89	0	202	34	8	31	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100331784--100331892	37	2.9	37	95	0	191	22	19	31	26	1.98
100338129--100338416	39	7.3	39	86	5	366	27	20	27	25	1.99
100338129--100338416	79	3.6	77	86	5	355	27	20	27	25	1.99
100338076--100338416	118	2.9	118	89	4	485	26	20	27	24	1.99
100338077--100338439	79	4.6	77	79	10	294	27	20	27	24	1.99
100346275--100346329	27	2.0	27	86	6	76	18	25	23	32	1.97
100348200--100348259	26	2.3	27	85	11	88	38	30	6	25	1.81
100348367--100348460	27	3.4	28	86	2	138	20	22	21	36	1.95
100348366--100348475	55	2.0	54	84	11	145	21	21	19	37	1.95
100356918--100356974	30	1.9	30	100	0	114	61	0	5	33	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322