genome.fa.s2.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  195  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64144301--64144629	100	3.3	98	83	5	342	39	18	14	27	1.90
64148461--64148824	88	4.0	87	71	14	225	42	17	11	29	1.84
64148317--64151753	189	17.7	188	72	12	766	40	17	15	27	1.89
64148728--64148923	101	1.9	101	84	2	214	39	17	14	29	1.89
64148317--64151750	188	17.7	184	71	14	1164	40	17	15	27	1.89
64148827--64149013	88	2.1	88	82	2	232	39	18	13	29	1.88
64148748--64153547	288	16.3	284	71	15	1735	39	17	15	27	1.90
64149128--64149299	88	2.0	88	84	2	229	38	15	17	28	1.90
64149807--64150287	101	4.8	101	79	4	492	41	15	16	27	1.88
64150207--64150374	87	1.9	87	86	2	239	41	14	17	27	1.88
64148322--64153366	389	12.9	389	73	13	2559	39	17	15	27	1.90
64150302--64153549	101	32.8	101	72	11	1795	39	17	15	27	1.90
64150988--64151153	87	1.9	87	86	0	233	40	13	16	28	1.87
64152092--64152123	13	2.5	13	94	0	55	43	43	6	6	1.54
64152206--64153497	188	6.8	188	76	10	1163	40	18	14	26	1.89
64152310--64152664	88	4.1	88	81	6	425	40	16	16	27	1.89
64152006--64153064	565	1.9	564	82	4	1350	40	18	15	26	1.89
64152873--64153053	86	2.1	88	88	2	267	40	19	14	25	1.90
64151891--64153549	389	4.3	390	81	9	1553	40	18	15	26	1.90
64153261--64153430	87	1.9	88	84	1	225	41	15	15	27	1.88
64153612--64153945	101	3.3	100	82	4	402	40	18	14	26	1.90
64153868--64154025	81	2.0	80	83	6	203	39	18	15	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64153667--64154227	282	2.0	284	82	4	695	39	19	14	26	1.90
64153947--64154272	101	3.2	100	79	3	377	40	17	14	27	1.89
64162659--64162710	15	3.2	15	73	19	50	46	0	0	53	1.00
64162672--64162708	19	1.9	19	88	0	56	51	0	0	48	1.00
64162743--64162782	13	2.9	13	82	13	53	47	0	0	52	1.00
64169841--64169896	25	2.3	25	81	9	62	62	7	1	28	1.32
64170738--64170833	33	3.0	32	80	11	99	56	2	1	40	1.18
64171479--64171537	19	3.3	17	76	23	59	6	6	8	77	1.11
64172268--64172299	4	8.5	4	86	13	50	21	0	0	78	0.76
64173286--64173340	28	2.0	28	81	0	65	16	1	9	72	1.18
64173337--64173639	22	13.6	23	67	17	122	42	1	1	53	1.23
64173361--64173411	25	2.1	24	85	10	68	39	0	0	60	0.97
64173382--64173455	38	1.9	38	91	5	123	40	0	0	59	0.97
64173350--64173612	22	12.0	22	68	14	136	42	1	1	53	1.21
64173408--64173462	21	2.4	23	88	11	78	41	0	0	58	0.98
64173361--64173479	60	1.9	63	88	5	181	42	0	0	57	1.04
64173362--64173493	60	2.1	62	81	9	153	44	1	0	53	1.09
64173535--64173633	12	8.6	11	70	22	62	43	0	2	54	1.11
64177393--64177510	43	2.8	43	84	2	132	30	13	23	32	1.93
64177412--64177532	43	2.8	42	83	6	145	28	14	23	32	1.95
64177624--64177670	20	2.3	20	85	0	67	34	2	27	36	1.69
64182018--64182132	43	2.7	42	77	7	124	32	15	23	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64182018--64182106	42	2.1	42	83	6	108	31	13	25	29	1.94
64182220--64182266	20	2.3	20	88	0	76	31	2	29	36	1.70
64185604--64185655	25	2.1	25	92	7	88	40	19	1	38	1.63
64186591--64186685	15	5.9	16	72	17	63	73	3	5	17	1.15
64186632--64186683	27	1.9	27	84	7	70	75	0	5	19	1.01
64186598--64186684	23	3.7	23	75	17	72	74	2	5	17	1.11
64189650--64189747	11	8.5	11	73	12	72	61	1	3	34	1.18
64189610--64189729	45	2.6	45	81	13	122	59	2	4	34	1.30
64189610--64189729	25	5.1	24	71	16	99	59	2	4	34	1.30
64189695--64189747	20	2.7	20	85	5	72	62	0	1	35	1.06
64189805--64189850	23	2.0	23	83	8	58	56	4	2	36	1.31
64191578--64191678	18	5.8	18	69	21	63	63	1	1	32	1.17
64191607--64191684	38	2.1	36	83	4	93	66	0	2	30	1.05
64191599--64191686	38	2.5	35	78	9	88	64	1	2	31	1.13
64191714--64191765	20	2.7	20	82	8	54	59	1	5	32	1.32
64192519--64192564	20	2.3	20	80	0	56	26	8	2	63	1.35
64192637--64192696	26	2.3	27	94	2	104	31	3	3	61	1.28
64192637--64192706	26	2.7	26	88	2	77	32	4	5	57	1.42
64206657--64206707	26	2.0	26	84	7	68	35	7	17	39	1.79
64209584--64209678	44	2.2	44	86	0	127	38	22	13	25	1.91
64213219--64213477	129	2.0	129	96	0	482	27	15	18	37	1.92
64215841--64215899	23	2.6	23	88	0	91	22	32	30	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64226323--64226372	26	2.0	24	88	7	73	64	6	0	30	1.18
64226343--64226401	21	2.8	21	78	12	59	69	8	0	22	1.15
64227996--64228047	20	2.6	21	82	14	65	28	13	7	50	1.69
64228652--64228758	53	2.0	53	96	0	196	42	14	15	28	1.86
64230413--64230995	236	2.4	239	82	8	673	45	10	10	33	1.74
64231057--64231095	20	2.0	19	85	5	51	41	10	10	38	1.73
64231288--64231397	55	2.0	55	98	0	211	48	7	4	40	1.51
64231421--64231507	16	5.4	16	87	0	120	40	4	25	29	1.76
64231667--64231825	58	2.8	57	80	4	171	54	4	0	40	1.25
64240016--64240059	12	3.9	11	82	11	54	43	0	6	50	1.29
64241305--64241371	21	3.2	22	79	8	77	35	20	13	29	1.91
64257753--64257777	13	1.9	13	100	0	50	60	0	0	40	0.97
64268014--64268237	40	5.6	40	91	1	308	24	20	28	26	1.99
64267975--64268237	80	3.3	80	85	3	318	23	20	28	26	1.99
64267975--64268237	120	2.2	120	82	4	318	23	20	28	26	1.99
64276068--64276158	40	2.3	40	92	3	148	24	19	27	28	1.99
64276068--64276195	40	3.2	40	85	3	134	25	20	27	27	1.99
64278077--64278196	51	2.4	51	88	0	177	25	23	15	35	1.94
64279163--64279188	13	2.0	13	100	0	52	30	23	7	38	1.83
64285837--64285963	47	2.7	46	82	7	148	23	29	19	26	1.98
64285787--64285963	94	1.9	95	85	4	250	23	28	19	28	1.98
64286678--64286702	12	2.1	12	100	0	50	60	16	8	16	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64290435--64290466	16	2.0	16	100	0	64	56	0	12	31	1.37
64291014--64291064	17	3.1	17	70	13	52	41	3	3	50	1.39
64295947--64296008	32	1.9	32	83	6	81	32	17	33	16	1.92
64297641--64297951	47	6.6	46	73	12	197	24	28	19	27	1.98
64298665--64298689	12	2.1	12	100	0	50	60	16	8	16	1.58
64299443--64299539	44	2.2	44	90	0	149	30	23	15	29	1.95
64305749--64306372	245	2.5	245	99	0	1239	34	10	4	49	1.60
64313185--64313373	50	3.8	49	86	2	243	29	26	18	25	1.98
64313186--64313373	99	1.9	99	88	2	286	29	26	18	25	1.98
64313186--64313381	101	2.0	99	87	2	284	28	27	18	25	1.98
64314527--64314611	27	3.1	27	86	8	111	36	23	23	16	1.94
64320436--64320511	38	2.0	37	94	2	134	32	21	2	42	1.66
64324289--64324332	21	2.2	19	84	8	52	27	20	4	47	1.69
64324495--64324611	42	2.8	42	80	12	123	29	25	16	28	1.97
64324552--64324653	44	2.4	42	82	11	111	30	26	15	27	1.96
64330356--64330423	33	2.0	34	82	2	84	29	23	20	26	1.99
64330606--64330662	27	2.1	27	80	6	62	35	21	22	21	1.96
64330614--64330670	27	2.1	27	83	0	69	35	19	22	22	1.96
64330834--64331059	27	8.4	27	85	1	265	24	18	20	36	1.95
64335985--64336233	125	2.0	125	92	0	417	36	20	18	24	1.95
64336283--64336499	40	5.5	40	87	3	280	24	29	23	23	1.99
64336553--64336824	136	2.0	136	98	0	526	30	25	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64336746--64336903	79	2.0	79	97	0	298	29	27	15	27	1.96
64338024--64338091	35	2.0	35	91	5	113	22	36	8	32	1.85
64338605--64338908	48	6.4	48	77	10	275	22	30	19	27	1.98
64338605--64338916	96	3.3	94	83	5	369	23	30	18	27	1.98
64349980--64350349	40	9.2	40	88	2	528	25	21	26	26	1.99
64349967--64350362	120	3.3	119	90	1	594	25	21	26	26	1.99
64360562--64360621	28	2.2	26	77	11	66	26	26	11	35	1.91
64360576--64360647	28	2.6	28	88	0	99	29	27	12	30	1.93
64364055--64364200	40	3.7	40	81	7	163	23	21	28	26	1.99
64372266--64372326	30	2.0	30	87	0	86	31	22	6	39	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322