Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  151  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49535714--49535893
31
5.8
31
87
2
245
25
27
19
27
1.99
49535714--49535893
93
1.9
93
89
2
281
25
27
19
27
1.99
49535877--49535997
50
2.4
51
90
5
192
25
23
14
36
1.93
49542033--49542158
62
2.0
62
96
0
234
40
10
14
34
1.80
49542400--49542444
23
2.0
23
81
0
54
55
2
0
42
1.12
49542666--49542706
18
2.3
18
86
0
55
43
26
4
24
1.74
49544268--49544379
56
2.0
56
87
3
163
33
26
14
25
1.94
49549239--49549402
69
2.4
70
87
1
204
32
24
10
31
1.90
49549239--49549402
35
4.7
35
84
3
215
32
24
10
31
1.90
49550474--49550515
21
2.0
21
81
9
50
45
21
4
28
1.72
49550627--49550656
8
3.6
8
95
4
51
40
33
0
26
1.57
49552256--49552322
30
2.2
31
79
12
77
41
14
4
38
1.67
49555492--49555516
3
8.3
3
100
0
50
64
0
36
0
0.94
49560039--49560096
23
2.5
24
75
13
59
48
3
0
48
1.18
49562299--49562493
96
2.0
95
90
1
300
41
24
8
26
1.82
49571887--49571931
21
2.1
21
84
8
56
37
2
4
55
1.32
49580069--49580106
18
2.1
18
90
9
60
39
0
5
55
1.23
49583459--49583574
39
3.0
39
87
0
169
25
20
26
26
1.99
49583459--49583602
78
1.8
77
82
5
182
26
20
26
27
1.99
49583717--49584062
63
5.5
63
99
0
683
34
17
16
31
1.92
49584220--49584306
43
2.0
43
100
0
174
29
6
16
47
1.72
49591497--49591622
39
3.2
39
82
0
162
25
19
26
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49591497--49591640
78
1.8
77
82
5
182
26
20
26
27
1.99
49591755--49592129
63
6.0
63
99
0
741
34
17
16
31
1.92
49594200--49594256
24
2.5
24
78
16
66
8
17
3
70
1.28
49597061--49597102
21
2.0
22
90
4
68
7
2
11
78
1.04
49597339--49597369
11
2.8
11
90
0
53
67
0
0
32
0.91
49598360--49598472
48
2.4
47
82
5
140
45
16
12
25
1.83
49600555--49600695
33
4.2
33
71
10
90
23
25
19
31
1.98
49606488--49606516
15
1.9
15
100
0
58
37
13
20
27
1.91
49608954--49609013
19
3.1
19
71
21
61
53
11
1
33
1.47
49610222--49610286
16
4.1
16
89
0
103
40
4
33
21
1.74
49610217--49610278
32
1.9
32
96
0
115
38
3
33
24
1.71
49610266--49610362
44
2.2
44
87
5
133
31
5
28
34
1.79
49610499--49610540
15
2.7
16
82
14
52
52
2
0
45
1.13
49610508--49610549
15
2.9
15
82
10
52
52
0
0
47
1.00
49610532--49610644
59
1.9
58
96
0
199
47
6
2
42
1.42
49610642--49610682
21
2.0
21
100
0
82
56
9
0
34
1.32
49618102--49618156
25
2.2
25
83
6
67
27
5
0
67
1.12
49618221--49618326
5
21.0
5
70
13
58
37
1
1
58
1.20
49618224--49618273
25
2.0
26
92
4
84
38
4
0
58
1.17
49618280--49618402
7
17.7
7
68
21
55
39
0
3
56
1.21
49618250--49618365
10
11.6
10
66
20
55
37
0
3
58
1.21
49618428--49618504
29
2.7
28
80
11
84
32
6
0
61
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49622366--49622404
16
2.4
16
86
0
51
43
28
5
23
1.75
49622566--49622664
30
3.3
30
86
0
153
18
6
47
28
1.72
49623533--49623566
16
2.1
16
94
0
59
70
0
8
20
1.13
49623459--49623817
89
4.0
89
88
1
486
40
17
14
27
1.89
49623729--49624174
73
6.1
73
90
3
668
32
21
17
28
1.96
49623747--49624167
145
2.9
145
93
0
716
30
22
17
28
1.97
49630400--49630425
13
2.0
13
100
0
52
0
30
7
61
1.24
49636111--49636165
25
2.3
23
78
12
58
43
3
16
36
1.65
49636239--49636359
27
4.5
27
77
12
97
57
3
6
32
1.40
49636239--49636346
27
4.0
28
75
15
104
58
3
6
31
1.41
49636231--49636442
25
8.6
25
69
17
95
56
3
6
33
1.42
49636382--49636436
28
2.0
28
85
7
76
58
3
1
36
1.26
49636414--49636450
18
2.1
18
89
0
56
70
2
0
27
1.01
49636922--49637020
30
3.3
30
82
0
135
20
5
46
28
1.71
49637932--49637975
17
2.6
17
81
0
52
54
2
2
40
1.25
49639019--49639170
56
2.7
56
83
2
180
26
13
21
37
1.91
49646522--49646658
33
4.4
33
76
22
136
48
2
1
48
1.22
49646555--49646667
59
1.9
60
83
8
151
49
1
2
46
1.26
49649765--49649790
10
2.6
10
100
0
52
19
19
38
23
1.93
49650591--49650651
31
2.0
31
83
6
79
37
6
3
52
1.44
49652726--49652791
35
1.9
34
93
6
116
34
7
6
51
1.55
49653232--49653321
29
3.0
30
72
9
85
42
4
18
34
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49653362--49653565
59
3.4
59
93
0
336
50
7
6
35
1.58
49657274--49657330
28
2.1
27
78
18
66
29
24
5
40
1.77
49657282--49657336
28
2.0
28
100
0
110
25
25
3
45
1.70
49662194--49662258
28
2.3
29
81
2
69
29
23
3
44
1.68
49672666--49672731
28
2.3
29
82
7
73
28
21
3
46
1.66
49682580--49682720
27
5.2
27
80
11
164
17
22
23
36
1.95
49682577--49682738
54
3.0
54
90
4
231
18
23
22
35
1.95
49682593--49682738
27
5.4
27
79
12
149
19
23
20
35
1.96
49684644--49684744
49
2.1
49
96
0
184
34
20
5
38
1.77
49686313--49686348
16
2.2
17
90
5
56
13
0
16
69
1.19
49691414--49691467
27
2.0
27
100
0
108
48
14
11
25
1.77
49692878--49692907
15
2.0
15
93
0
51
43
6
16
33
1.74
49693710--49693744
17
2.1
17
88
0
52
68
2
0
28
1.04
49694211--49694245
16
2.2
16
100
0
70
62
17
0
20
1.32
49697462--49697505
20
2.2
20
87
0
61
47
2
13
36
1.56
49701158--49701211
22
2.5
22
87
6
74
37
0
1
61
1.07
49701288--49701312
13
1.9
13
100
0
50
52
0
0
48
1.00
49701464--49701503
13
3.0
13
96
3
71
67
7
25
0
1.16
49702387--49702503
37
3.0
38
75
6
110
24
21
25
28
1.99
49703884--49703935
25
2.1
25
85
0
68
21
7
19
51
1.71
49707623--49707699
38
2.0
38
92
0
127
38
10
19
31
1.85
49717804--49717834
15
2.1
14
94
5
53
25
0
0
74
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49718964--49719351
48
7.9
47
77
13
292
27
19
29
23
1.98
49719033--49719153
61
2.0
61
95
0
215
28
19
28
22
1.98
49719095--49719351
96
2.7
95
84
6
329
26
19
29
24
1.98
49730223--49730393
94
1.8
93
81
5
209
23
27
19
28
1.99
49730269--49730430
46
3.5
48
75
5
127
23
27
18
30
1.98
49736678--49736716
21
1.9
20
94
5
69
15
25
41
17
1.89
49737952--49738120
48
3.6
48
83
3
191
23
27
20
28
1.99
49739600--49739698
28
3.6
27
71
11
74
69
0
3
27
1.03
49739600--49739713
36
3.1
37
80
10
103
70
0
2
27
1.01
49739638--49739714
9
8.8
8
78
18
66
70
0
2
27
1.01
49739611--49739755
37
4.0
35
78
14
125
65
1
3
29
1.17
49739626--49739700
10
7.9
10
84
14
81
68
0
2
29
1.04
49739625--49739714
10
9.8
10
76
19
74
68
0
2
28
1.01
49739609--49739757
18
8.2
18
69
10
81
66
1
3
28
1.16
49739862--49739893
12
2.8
12
86
13
50
62
0
0
37
0.95
49739930--49739962
10
3.2
10
95
4
57
72
0
0
27
0.85
49740041--49740100
18
3.3
18
86
6
86
31
3
0
65
1.09
49740040--49740100
9
6.8
9
76
12
63
32
3
0
63
1.10
49744341--49744369
3
9.7
3
100
0
58
31
0
0
68
0.89
49752521--49752706
41
4.5
41
84
1
203
36
13
26
23
1.92
49752517--49752708
82
2.3
82
85
1
251
36
13
26
22
1.92
49763882--49763928
20
2.3
20
88
0
67
14
31
36
17
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49767231--49767260
12
2.5
12
94
0
51
43
10
6
40
1.64
49770363--49770407
14
2.9
16
87
9
58
42
8
0
48
1.34
49770361--49770407
16
2.9
16
81
12
53
42
8
0
48
1.33
49779535--49780004
47
10.0
47
71
17
293
27
18
30
23
1.98
49779535--49779864
94
3.5
94
100
0
660
26
19
31
22
1.98
49779535--49779910
188
2.0
187
93
2
639
26
19
31
22
1.98
49779744--49780004
140
1.9
140
83
6
341
28
17
29
24
1.97
49780712--49780820
39
2.6
41
76
11
107
18
26
40
14
1.89
49785576--49785617
18
2.3
18
91
0
66
26
14
33
26
1.94
49787201--49787370
46
3.6
47
79
13
158
27
19
29
24
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322