Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  148  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48693522--48693592
22
3.1
22
69
16
54
35
8
30
25
1.86
48693618--48693688
22
3.1
22
69
16
54
35
8
30
25
1.86
48693714--48693784
22
3.1
22
69
16
54
35
8
30
25
1.86
48693810--48693880
22
3.1
22
69
16
54
35
8
30
25
1.86
48693906--48693976
22
3.1
22
69
16
54
35
8
30
25
1.86
48694002--48694072
22
3.1
22
69
16
54
35
8
30
25
1.86
48694098--48694168
22
3.1
22
69
16
54
35
8
30
25
1.86
48694194--48694264
22
3.1
22
69
16
54
35
8
30
25
1.86
48697308--48697410
29
3.6
29
79
6
120
31
30
11
27
1.92
48697629--48697664
8
4.5
8
92
0
54
16
25
11
47
1.79
48697620--48697671
24
2.2
24
92
0
86
11
23
15
50
1.76
48697621--48697664
16
2.8
16
89
0
61
13
25
13
47
1.79
48698885--48698918
16
2.1
16
100
0
68
55
11
5
26
1.58
48699962--48700040
28
2.8
28
80
0
95
29
24
12
34
1.92
48704275--48704576
57
5.3
57
87
0
406
29
33
17
19
1.95
48704335--48704546
29
7.4
29
67
3
124
30
33
17
18
1.94
48704364--48704574
28
7.4
28
68
5
118
30
33
18
18
1.94
48710915--48710991
29
2.7
29
82
6
86
28
29
20
20
1.98
48714732--48714808
40
1.9
40
100
0
154
32
20
16
29
1.95
48724478--48724525
25
1.9
25
86
0
69
35
22
14
27
1.93
48724572--48724609
11
3.6
11
79
13
53
36
13
18
31
1.89
48724657--48724726
24
2.8
25
80
6
79
27
22
21
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48724666--48724739
24
3.0
24
77
11
62
28
22
20
28
1.99
48724945--48725014
30
2.3
30
85
2
95
34
15
25
24
1.95
48728214--48728459
40
6.2
40
85
4
295
22
22
28
26
1.99
48733498--48734409
40
22.8
40
92
0
1509
22
28
20
28
1.98
48733498--48734409
80
11.4
80
98
0
1743
22
28
20
28
1.98
48739419--48739585
84
2.0
84
97
0
316
26
27
14
31
1.95
48740951--48741075
62
2.0
62
96
0
232
19
9
41
29
1.83
48742749--48743180
40
10.8
40
92
0
702
21
26
20
31
1.98
48759627--48759675
26
2.0
24
84
8
62
63
8
2
26
1.34
48759905--48759979
11
6.9
11
77
8
64
61
30
4
4
1.33
48759903--48759988
22
4.0
22
80
6
86
61
29
4
4
1.36
48773301--48773350
20
2.5
20
96
0
91
46
14
4
36
1.63
48775552--48775807
48
5.4
48
74
12
213
26
20
25
27
1.99
48781351--48781402
20
2.7
18
80
11
59
44
0
5
50
1.26
48781346--48781406
9
6.4
9
80
10
68
37
0
4
57
1.20
48781345--48781407
29
2.2
30
77
13
69
36
0
4
58
1.19
48783249--48783327
28
2.8
28
79
12
83
63
5
11
20
1.46
48788228--48788272
6
7.5
6
90
9
74
82
0
15
2
0.77
48790067--48790106
16
2.4
16
91
8
62
47
20
0
32
1.50
48793092--48793245
84
1.8
84
85
2
220
27
19
20
33
1.96
48800320--48800409
28
3.2
28
83
0
126
56
7
17
17
1.64
48804280--48804510
68
3.5
64
78
12
193
23
29
16
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48805176--48805236
30
2.0
30
87
0
86
29
22
8
39
1.83
48809700--48809740
21
1.9
22
90
5
66
26
0
7
65
1.18
48811702--48811759
28
2.0
28
87
9
82
20
41
18
18
1.91
48813062--48813204
51
2.8
51
88
0
205
30
30
16
22
1.96
48817642--48817719
40
1.9
40
84
7
104
61
14
15
8
1.56
48818478--48818538
29
2.1
29
93
0
104
34
29
21
14
1.93
48822582--48822625
18
2.4
18
80
0
52
70
4
4
20
1.23
48825572--48825611
20
2.0
20
85
0
53
35
15
0
50
1.44
48830073--48830103
12
2.6
12
100
0
62
0
12
0
87
0.55
48830070--48830106
15
2.5
15
91
8
58
0
10
0
89
0.49
48830361--48830578
3
73.0
3
64
13
56
56
2
10
30
1.46
48830361--48830423
18
3.5
18
78
4
65
58
1
6
33
1.33
48831000--48831042
3
15.0
3
90
4
63
69
2
0
27
1.00
48832649--48832793
44
3.3
44
66
3
139
22
21
21
35
1.96
48832693--48832837
44
3.3
44
66
3
139
17
24
23
34
1.96
48832860--48833363
44
11.5
44
68
6
276
19
24
21
34
1.96
48832552--48833411
87
9.8
87
92
1
1188
20
23
21
34
1.97
48832825--48833409
43
13.5
43
64
7
216
20
23
21
34
1.97
48837725--48837988
18
14.3
19
72
11
108
37
14
11
35
1.83
48837798--48837976
54
3.3
52
79
5
171
37
13
12
35
1.83
48837804--48837988
36
5.2
36
76
2
167
38
12
11
36
1.81
48838354--48838404
21
2.3
21
81
15
59
41
5
1
50
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48845414--48845458
22
2.0
22
83
8
56
13
22
6
57
1.59
48848707--48848924
3
73.0
3
64
13
56
56
2
10
30
1.46
48848707--48848769
18
3.5
18
78
4
65
58
1
6
33
1.33
48849346--48849388
3
15.0
3
90
4
63
69
2
0
27
1.00
48853807--48853900
7
13.4
7
70
4
64
27
0
44
27
1.55
48853801--48853881
21
3.9
21
84
7
85
30
0
41
27
1.56
48853870--48853922
14
3.7
14
75
5
52
20
0
43
35
1.52
48857209--48857278
3
24.0
3
82
5
81
71
0
28
0
0.86
48857203--48857285
20
4.2
21
82
8
95
73
0
26
0
0.83
48857209--48857276
32
2.1
32
88
0
100
72
0
27
0
0.85
48858565--48858618
3
18.0
3
96
0
99
0
31
0
68
0.90
48858695--48858734
21
1.9
21
100
0
80
25
30
17
27
1.97
48858770--48858837
30
2.2
31
87
7
95
20
8
20
50
1.75
48859963--48860009
23
2.1
22
88
4
67
48
8
12
29
1.71
48860006--48860108
19
5.3
19
66
28
65
38
0
6
54
1.27
48860005--48860119
39
2.9
39
94
0
203
39
0
6
54
1.25
48860043--48860092
24
2.1
24
85
7
66
40
0
4
56
1.18
48860220--48860320
18
5.6
18
90
0
166
45
26
0
27
1.54
48860220--48860358
9
15.7
9
84
4
149
45
23
2
28
1.65
48865416--48865444
14
2.1
14
93
6
51
34
0
10
55
1.34
48865863--48865915
21
2.5
21
87
0
70
33
18
47
0
1.49
48866305--48866360
29
1.9
29
92
0
94
26
33
10
28
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48869588--48869758
46
3.7
47
83
8
185
27
18
29
25
1.98
48873168--48873195
11
2.5
11
100
0
56
35
0
7
57
1.26
48878856--48878891
16
2.2
16
90
0
54
66
0
0
33
0.92
48880359--48880405
25
1.9
25
83
12
62
53
2
4
40
1.32
48882918--48883019
49
2.1
49
94
0
177
28
16
28
26
1.97
48886731--48886809
30
2.8
30
86
7
103
45
2
3
48
1.34
48886753--48886819
29
2.3
30
84
2
91
47
2
2
46
1.33
48887269--48887330
31
2.0
31
84
9
81
46
0
0
53
1.00
48887304--48887357
22
2.3
23
81
12
67
50
1
0
48
1.11
48888061--48888092
11
2.6
13
85
14
50
53
0
6
40
1.26
48899097--48899121
8
3.1
8
100
0
50
24
0
0
76
0.80
48901824--48901936
27
4.2
26
85
5
136
21
25
18
34
1.96
48901827--48901931
55
1.9
54
90
5
167
21
26
19
32
1.97
48904663--48904755
46
2.0
46
85
4
125
31
18
24
25
1.98
48906255--48906295
5
8.4
5
94
5
75
41
0
0
58
0.98
48906255--48906316
12
5.3
12
75
21
53
41
0
1
56
1.09
48906263--48906324
20
3.2
20
84
15
69
38
0
3
58
1.15
48907912--48907936
12
2.1
12
100
0
50
16
24
20
40
1.91
48907914--48908007
45
2.1
45
92
4
154
22
19
19
39
1.93
48907899--48908018
45
2.4
49
76
18
124
22
18
19
40
1.92
48907914--48908020
45
2.4
45
88
3
135
23
17
18
40
1.91
48915616--48915679
13
4.9
13
74
0
65
31
6
28
34
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48915616--48915679
26
2.5
26
76
0
83
31
6
28
34
1.82
48917122--48917200
37
2.1
37
86
4
106
26
30
17
25
1.97
48917320--48917745
47
9.1
47
96
0
744
27
30
10
32
1.90
48923194--48923264
20
3.5
20
84
0
97
46
0
28
25
1.53
48923194--48923278
20
4.2
20
84
0
89
43
0
27
29
1.55
48926027--48926115
25
3.2
28
70
17
96
48
7
5
38
1.56
48927389--48927486
49
2.0
49
95
0
178
25
15
22
36
1.93
48933896--48933957
29
2.1
29
87
3
88
59
11
12
16
1.61
48933891--48933965
29
2.6
28
81
6
87
54
9
16
20
1.68
48933896--48933976
28
2.8
29
83
7
94
60
9
11
18
1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322