genome.fa.s2.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  142  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46407495--46407557	9	6.6	9	73	20	56	38	20	6	34	1.78
46407483--46407539	20	2.8	20	97	0	105	33	19	10	36	1.86
46407495--46407559	5	13.4	5	75	18	66	36	21	6	35	1.79
46414596--46414639	22	2.0	22	100	0	88	31	18	36	13	1.90
46414789--46414832	22	2.0	22	100	0	88	31	18	36	13	1.90
46414556--46414941	193	2.0	193	100	0	772	34	21	22	21	1.97
46415634--46415769	26	5.3	26	81	4	154	27	21	20	30	1.98
46415634--46415769	52	2.7	52	87	5	190	27	21	20	30	1.98
46415819--46415893	20	3.8	20	89	6	102	36	20	8	36	1.82
46415836--46415874	11	3.7	11	80	13	55	33	20	10	35	1.86
46426420--46426609	29	6.6	29	96	1	328	24	16	33	24	1.96
46435794--46435835	21	2.0	21	95	0	75	30	9	30	28	1.89
46440369--46440636	40	6.7	40	94	1	450	27	20	27	25	1.99
46450033--46450217	79	2.3	81	84	7	236	24	22	27	25	2.00
46450034--46450217	40	4.6	40	83	9	216	24	22	27	25	2.00
46450034--46450250	79	2.7	79	81	7	201	25	22	27	24	2.00
46473864--46474022	85	1.9	85	80	5	187	24	18	27	29	1.98
46481112--46481267	43	3.7	43	76	6	131	26	21	25	25	2.00
46481112--46481267	85	1.8	85	82	5	199	26	21	25	25	2.00
46482794--46482941	27	5.5	27	76	8	131	41	20	15	21	1.89
46485981--46486166	29	6.4	29	78	10	177	38	12	24	24	1.90
46486009--46486195	58	3.2	58	73	13	186	38	11	25	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46485980--46486225	116	2.1	117	87	4	354	39	12	25	23	1.89
46486005--46486195	87	2.2	87	85	7	246	38	11	25	24	1.89
46486005--46486253	29	8.6	28	74	11	134	38	11	25	24	1.89
46495264--46495368	27	3.9	26	80	9	104	18	25	21	34	1.96
46495264--46495375	54	2.1	54	85	6	147	16	25	23	34	1.95
46502848--46502911	26	2.4	26	81	5	74	34	25	10	29	1.90
46503016--46503120	27	3.9	27	81	9	124	19	24	20	36	1.95
46503016--46503127	54	2.1	54	84	3	145	18	24	20	36	1.95
46505336--46505409	29	2.5	30	71	18	73	51	5	18	24	1.67
46505873--46505952	27	3.2	27	60	26	66	18	17	26	37	1.93
46505871--46506011	48	2.9	48	87	2	176	20	15	27	36	1.93
46512902--46512940	18	2.1	18	85	4	51	38	28	0	33	1.57
46516703--46516788	40	2.2	39	91	4	138	50	5	23	20	1.70
46525464--46525582	28	4.5	26	68	20	70	53	2	3	40	1.31
46525590--46525678	38	2.4	37	77	17	94	53	3	6	35	1.44
46525655--46525691	19	1.9	19	88	0	56	51	2	2	43	1.30
46525826--46525881	13	4.5	13	74	17	55	44	7	1	46	1.41
46525814--46525888	37	2.0	38	97	2	143	45	5	2	46	1.40
46538322--46538399	39	2.0	39	94	0	138	33	15	17	33	1.92
46547891--46547946	21	2.7	21	100	0	112	33	12	28	25	1.92
46550995--46551019	8	3.1	8	100	0	50	24	0	0	76	0.80
46552710--46552786	39	2.0	39	92	0	127	36	19	15	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46564409--46564443	18	2.0	18	88	5	54	28	14	20	37	1.91
46564604--46564645	20	2.1	20	90	0	66	47	9	14	28	1.75
46565500--46565611	29	3.9	29	77	8	95	28	29	14	27	1.95
46565497--46565588	29	3.2	29	78	7	98	27	29	15	28	1.96
46565683--46565720	9	4.1	9	87	12	51	21	34	13	31	1.91
46565833--46565885	16	3.3	16	76	10	54	9	16	18	54	1.69
46565827--46565877	24	2.1	24	81	0	57	11	17	17	52	1.73
46569249--46569297	22	2.2	22	86	10	73	24	2	4	69	1.17
46570728--46570839	43	2.6	43	92	0	197	29	33	25	12	1.92
46570832--46570915	38	2.2	38	89	0	132	30	27	21	20	1.98
46578645--46578678	16	2.1	16	88	0	50	50	14	17	17	1.79
46581481--46581521	21	2.0	21	90	0	64	29	21	29	19	1.98
46583427--46583460	16	2.1	16	88	0	50	50	14	17	17	1.79
46585576--46585659	44	1.9	44	95	0	150	29	7	14	48	1.70
46588915--46589031	23	5.0	23	73	16	89	22	22	20	35	1.96
46590881--46590993	43	2.6	44	79	8	117	31	22	17	28	1.96
46593264--46593291	4	7.0	4	100	0	56	25	0	0	75	0.81
46607842--46608064	39	5.7	40	86	7	273	25	22	27	24	2.00
46607842--46608064	79	2.8	81	85	8	282	25	22	27	24	2.00
46607842--46608097	79	3.3	79	82	9	224	26	21	27	24	1.99
46615830--46616014	79	2.3	81	84	7	236	24	22	27	25	2.00
46615831--46616014	40	4.6	40	83	9	216	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46615883--46616047	79	2.1	79	84	6	210	26	21	27	25	1.99
46633606--46633836	40	5.8	40	91	1	338	25	29	20	24	1.99
46639688--46640141	40	11.4	40	98	0	854	22	27	20	29	1.98
46646410--46646533	22	5.6	21	72	17	92	22	19	18	39	1.92
46655822--46656049	40	5.7	40	90	3	352	25	28	22	24	2.00
46655789--46656045	80	3.2	79	85	5	333	24	28	22	24	2.00
46658814--46658965	27	5.6	27	92	3	232	30	28	13	27	1.94
46658814--46658990	55	3.2	55	89	0	246	31	29	12	26	1.93
46668899--46668965	31	2.1	32	81	13	77	31	29	11	26	1.92
46669239--46669297	30	2.0	30	83	6	75	28	15	25	30	1.96
46692201--46692255	29	1.9	29	82	17	71	9	20	3	67	1.34
46693144--46693226	42	2.0	42	100	0	166	32	19	9	38	1.84
46696144--46696222	10	7.9	10	73	10	63	36	13	30	18	1.90
46701190--46701367	27	6.6	26	82	6	169	26	15	28	29	1.96
46701191--46701346	82	1.9	81	86	3	224	26	16	28	28	1.96
46701187--46701367	82	2.2	81	82	2	220	26	16	28	29	1.96
46710724--46711013	48	6.0	47	73	13	230	27	20	27	24	1.99
46710724--46711013	96	3.0	98	83	6	356	27	20	27	24	1.99
46720648--46720704	9	5.9	9	73	15	51	35	21	8	35	1.84
46720644--46720706	20	3.2	20	95	0	117	31	19	12	36	1.89
46720743--46720790	25	1.9	25	91	0	78	25	14	25	35	1.94
46728122--46728504	191	2.0	191	98	0	748	26	29	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46728481--46728557	31	2.5	31	82	2	91	18	22	19	40	1.92
46728751--46728835	25	3.4	25	88	4	118	24	23	23	28	2.00
46728765--46728895	25	5.4	24	84	9	142	26	21	19	32	1.97
46728949--46728991	20	2.2	20	95	0	77	30	18	13	37	1.90
46729028--46729075	25	1.9	25	95	0	87	25	12	25	37	1.91
46730811--46730882	37	1.9	37	97	0	135	25	13	11	50	1.75
46739007--46739031	12	2.1	12	100	0	50	16	16	40	28	1.89
46745328--46745364	18	2.1	18	100	0	74	56	5	16	21	1.59
46747064--46747111	21	2.3	21	92	0	78	12	33	25	29	1.92
46752838--46752990	42	3.6	42	75	0	135	31	25	15	28	1.95
46757232--46757407	88	2.0	88	96	0	325	28	19	14	36	1.92
46759247--46759323	40	1.9	40	89	0	118	29	23	20	25	1.99
46763710--46763777	35	1.9	35	96	0	127	35	22	16	26	1.94
46779512--46779626	42	2.7	42	76	0	131	29	23	16	30	1.96
46784842--46785107	47	5.7	47	77	12	185	28	19	29	22	1.98
46784886--46785105	93	2.3	93	83	8	268	28	19	29	22	1.98
46787861--46787979	36	3.3	36	76	6	134	29	23	20	26	1.99
46794260--46794299	11	3.6	11	82	0	53	25	15	2	57	1.50
46797977--46798011	2	17.5	2	100	0	70	51	0	48	0	1.00
46798254--46798307	21	2.5	22	78	3	65	53	1	1	42	1.22
46798283--46798344	32	2.0	32	87	9	92	53	0	0	46	1.00
46799711--46799758	21	2.3	21	96	3	89	33	10	16	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46800316--46800361	22	2.1	22	95	0	83	26	28	8	36	1.86
46802845--46802902	25	2.3	25	84	0	71	24	25	17	32	1.96
46813766--46813818	20	2.7	20	93	0	97	18	33	33	13	1.90
46823978--46824026	25	2.0	24	88	4	71	48	28	4	18	1.66
46824618--46824666	21	2.4	21	90	6	75	6	24	8	61	1.47
46825295--46825333	8	4.9	8	83	0	51	43	23	25	7	1.80
46825295--46825333	16	2.4	16	91	0	69	43	23	25	7	1.80
46825559--46825632	29	2.6	29	84	0	94	27	21	25	25	2.00
46825559--46825658	29	3.5	29	79	6	80	27	19	27	27	1.99
46830482--46830549	23	2.8	24	84	10	86	32	16	26	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322