genome.fa.s2.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  98  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31794955--31795012	19	3.4	19	67	30	58	17	17	17	48	1.82
31794948--31795140	25	7.9	24	77	13	92	19	18	14	48	1.82
31794926--31795139	31	7.2	31	86	9	257	19	18	14	48	1.82
31794945--31795164	85	2.6	85	86	5	275	19	17	14	49	1.80
31818967--31819020	27	2.0	27	89	3	83	25	38	16	18	1.92
31819224--31819433	43	4.9	42	88	3	267	33	32	20	12	1.91
31819232--31819433	86	2.3	86	89	3	300	34	32	20	12	1.90
31839236--31839264	4	7.2	4	100	0	58	24	0	0	75	0.80
31839945--31839995	8	6.4	8	83	0	57	47	19	19	13	1.83
31839960--31840003	16	2.8	16	82	0	52	47	18	22	11	1.80
31840220--31840301	29	2.9	28	74	5	83	30	15	29	24	1.96
31841624--31841694	37	1.9	37	91	0	115	28	25	16	29	1.97
31846272--31846514	48	5.1	48	81	3	283	34	28	16	20	1.94
31847710--31847968	27	9.6	27	84	3	272	40	18	10	30	1.84
31847710--31847968	81	3.2	78	82	8	313	40	18	10	30	1.84
31847956--31848386	27	16.0	27	79	5	390	38	18	17	25	1.92
31847953--31848389	54	8.1	54	86	1	500	39	18	16	25	1.92
31847927--31848362	81	5.4	81	81	4	450	39	18	15	25	1.91
31848504--31848550	21	2.3	20	88	3	67	36	8	25	29	1.86
31848600--31848669	25	2.8	25	91	0	113	27	22	21	28	1.99
31848600--31848682	25	3.4	24	83	8	96	28	21	21	27	1.99
31850400--31850424	13	1.9	13	100	0	50	32	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31850974--31851152	27	6.6	27	82	7	184	27	15	27	29	1.96
31850976--31851131	82	1.9	81	86	3	224	27	15	28	28	1.96
31850972--31851152	82	2.2	81	81	2	220	27	14	27	29	1.96
31861577--31861671	48	2.0	48	81	8	113	27	27	17	27	1.98
31864645--31864784	27	5.2	27	82	6	167	37	16	19	27	1.93
31864653--31864787	54	2.5	54	89	4	209	36	18	20	25	1.95
31865300--31865361	22	2.9	22	81	11	83	17	25	22	33	1.96
31865596--31865683	6	14.3	6	71	17	65	19	19	13	47	1.82
31865599--31865662	25	2.6	25	92	0	101	18	21	14	45	1.85
31870430--31870499	27	2.6	26	95	2	95	31	28	12	27	1.93
31870430--31870527	28	3.5	28	90	2	135	31	28	13	26	1.94
31877061--31877386	165	2.0	165	99	0	643	33	24	15	26	1.95
31882904--31882948	23	2.0	23	95	0	81	33	15	26	24	1.95
31885819--31885849	14	2.2	14	100	0	62	19	16	41	22	1.89
31889216--31889277	26	2.3	27	86	10	92	37	27	8	27	1.85
31889383--31889463	27	3.0	27	90	1	117	19	24	19	35	1.95
31892963--31893024	26	2.3	27	86	10	92	37	27	8	27	1.85
31893128--31893215	27	3.3	26	85	4	113	20	21	22	35	1.96
31894970--31895167	40	5.0	40	90	3	283	28	20	27	23	1.99
31894970--31895191	80	2.8	80	85	2	252	28	19	27	24	1.99
31896859--31896886	14	2.0	14	100	0	56	42	0	14	42	1.45
31898609--31898889	39	7.2	39	91	0	409	25	23	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31898609--31898889	117	2.4	117	94	0	481	25	23	27	22	2.00
31926131--31926310	28	6.6	27	93	2	270	32	28	12	26	1.93
31926131--31926310	55	3.3	55	92	1	290	32	28	12	26	1.93
31926131--31926310	83	2.2	82	91	1	288	32	28	12	26	1.93
31947462--31947587	40	3.2	38	86	11	166	26	19	25	27	1.99
31947558--31947787	115	2.0	115	100	0	460	30	15	20	33	1.94
31949394--31949543	43	3.5	43	76	10	130	26	25	21	26	1.99
31957826--31957998	46	3.7	46	77	11	183	23	20	26	30	1.98
31957823--31957993	93	1.8	93	89	2	272	22	20	27	29	1.99
31959905--31959931	9	3.0	9	100	0	54	22	22	0	55	1.44
31966577--31966656	41	2.0	41	100	0	160	40	11	18	30	1.86
31972164--31972261	45	2.2	45	84	8	123	22	28	23	25	1.99
31972602--31972726	43	2.9	43	91	2	198	31	33	23	12	1.91
31972719--31972802	38	2.2	38	82	0	105	32	26	20	21	1.98
31978840--31978900	30	2.0	30	87	0	86	40	4	24	29	1.76
31981589--31981678	42	2.1	42	85	0	117	33	24	12	30	1.92
31983875--31983943	27	2.6	27	90	0	102	36	8	36	18	1.82
31985947--31986038	28	3.4	27	80	10	100	35	11	23	28	1.91
31986057--31986261	51	4.0	51	83	3	234	28	15	27	28	1.96
31986069--31986261	103	1.9	103	82	6	248	27	16	27	28	1.97
31991074--31991184	43	2.6	42	76	9	109	27	19	25	27	1.99
31993722--31993850	46	2.8	46	92	0	213	30	30	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31993730--31993869	46	3.0	45	83	12	137	29	30	20	20	1.97
31994270--31994329	30	2.0	30	86	0	84	33	25	5	36	1.78
31998787--31998825	19	2.1	19	95	0	69	15	28	20	35	1.93
32000942--32001430	256	1.9	256	100	0	978	30	26	16	26	1.97
32001345--32001432	46	1.9	46	88	0	122	28	29	22	19	1.98
32002852--32003329	121	3.7	121	76	14	420	46	5	8	39	1.59
32002973--32003330	138	2.6	140	91	2	580	46	6	8	38	1.60
32010417--32010457	20	2.0	20	90	0	64	43	17	2	36	1.62
32017216--32017313	20	4.9	19	74	9	79	15	28	16	39	1.89
32017257--32017323	20	3.3	19	81	10	71	13	25	17	43	1.86
32017704--32017755	25	2.1	25	92	0	86	38	5	21	34	1.77
32017704--32017762	25	2.4	25	86	5	68	40	6	20	32	1.78
32019857--32019900	22	2.0	22	81	0	52	43	22	0	34	1.54
32019884--32019930	22	2.1	22	92	0	76	44	8	8	38	1.65
32026042--32026125	27	3.2	26	84	1	105	22	21	20	35	1.96
32026284--32026338	28	2.0	28	85	0	74	25	23	23	27	2.00
32028877--32028901	13	1.9	13	100	0	50	12	24	24	40	1.88
32035557--32035619	30	2.1	30	100	0	126	28	19	30	22	1.98
32042404--32042479	22	3.3	22	77	15	82	35	21	25	18	1.95
32042404--32042479	24	3.3	23	80	12	86	35	21	25	18	1.95
32042389--32042479	46	2.1	42	85	8	119	36	19	24	19	1.95
32060766--32060987	40	5.6	40	83	9	258	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32062768--32062975	55	3.8	53	81	7	249	35	17	24	22	1.95
32062775--32062975	108	1.8	110	87	4	300	34	17	24	22	1.96
32070359--32070564	55	3.8	53	78	7	218	35	17	25	21	1.95
32075541--32075691	27	5.6	26	80	4	115	26	16	28	28	1.97
32075541--32075666	54	2.3	54	82	8	148	26	16	28	28	1.97
32075568--32075717	55	2.8	54	81	6	160	27	15	30	27	1.96
32075541--32075696	82	1.9	81	81	3	188	26	16	28	28	1.96
32075568--32075717	27	5.5	27	81	3	113	27	15	30	27	1.96
32083621--32083798	27	6.6	27	83	3	205	26	15	28	29	1.96
32083622--32083777	82	1.9	81	88	3	233	26	15	28	29	1.96
32083618--32083798	82	2.2	81	83	2	229	27	15	27	29	1.96
32085477--32085597	43	2.9	42	75	9	120	27	15	27	29	1.96
32089325--32089422	47	2.1	47	92	0	160	29	11	14	44	1.79
32090200--32090419	45	5.0	45	87	3	270	25	20	25	28	1.99
32092152--32092434	27	10.6	27	74	7	204	38	18	10	32	1.85
32092202--32092396	53	3.7	51	82	7	194	39	17	10	32	1.84
32092417--32092817	27	14.9	27	82	5	377	38	17	19	24	1.93
32092426--32092817	54	7.3	54	80	5	425	38	17	19	24	1.93
32092417--32092817	108	3.7	108	90	2	581	38	17	19	24	1.93
32092805--32092831	14	1.9	14	100	0	54	40	22	7	29	1.81
32092778--32092857	41	2.0	41	90	5	126	35	20	18	26	1.95
32092821--32092872	27	1.9	27	88	0	77	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32093281--32093345	22	3.0	22	80	13	80	20	23	23	33	1.97
32093504--32093611	27	4.0	26	85	5	135	17	23	23	36	1.95
32093729--32093816	6	14.3	6	68	17	56	18	19	13	48	1.80
32095774--32096003	27	8.7	27	74	10	172	38	20	9	31	1.85
32095774--32096003	53	4.3	53	76	6	189	38	20	9	31	1.85
32095995--32096316	27	12.0	27	84	1	387	35	17	20	26	1.95
32096743--32096807	22	3.0	22	82	8	78	23	24	20	32	1.98
32096958--32097071	27	4.3	26	82	7	104	19	22	18	39	1.92
32096958--32097073	54	2.2	53	81	3	126	18	22	19	38	1.93
32108773--32108870	43	2.3	43	87	0	142	28	24	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322