Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  321  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106321458--106321503
22
2.1
22
84
8
58
17
17
30
34
1.93
106329256--106329299
23
1.9
22
90
9
70
43
0
0
56
0.99
106340405--106340439
17
2.1
17
100
0
70
40
17
14
28
1.88
106342907--106342945
19
2.0
19
85
5
51
53
10
7
28
1.62
106360218--106360258
20
2.0
20
85
0
55
39
4
2
53
1.35
106365405--106365473
21
3.2
20
72
11
57
36
1
1
60
1.14
106365428--106365463
18
2.0
18
88
0
54
25
2
2
69
1.15
106380613--106380679
34
1.9
35
84
3
91
44
11
8
34
1.73
106394268--106394325
26
2.2
27
87
3
82
50
15
13
20
1.78
106396631--106396689
9
6.4
9
76
16
50
69
0
0
30
0.89
106396584--106396709
64
1.9
65
82
8
155
61
2
2
33
1.21
106397411--106397454
14
3.2
13
75
12
52
36
0
2
61
1.09
106403678--106403757
29
2.7
29
78
11
81
27
3
11
57
1.50
106416098--106416148
15
3.5
15
77
12
54
31
0
1
66
1.03
106423830--106423855
12
2.2
12
100
0
52
57
0
0
42
0.98
106426298--106426339
21
2.0
21
85
0
57
35
23
9
30
1.87
106427932--106427971
21
1.9
21
85
10
55
67
2
0
30
1.04
106427979--106428012
18
1.9
18
88
5
52
61
5
2
29
1.34
106428098--106428168
31
2.3
31
85
0
97
35
11
11
42
1.77
106428805--106428838
17
1.9
18
94
5
61
70
0
5
23
1.09
106428804--106428841
17
2.2
17
85
4
58
73
0
5
21
1.02
106431375--106431400
7
3.7
7
100
0
52
11
11
15
61
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106441206--106441248
21
2.0
23
86
9
63
53
0
2
44
1.13
106444051--106444456
200
2.0
200
99
0
803
22
14
21
42
1.88
106445793--106445826
17
2.1
16
88
5
50
14
0
2
82
0.79
106445785--106445826
8
5.0
8
86
11
57
14
2
2
80
0.90
106446818--106446857
20
2.0
20
85
9
55
35
7
5
52
1.51
106452981--106453029
6
7.8
6
86
13
64
81
0
14
4
0.83
106452973--106453028
20
2.9
21
82
15
68
82
1
12
3
0.88
106452971--106453028
17
3.2
17
80
17
64
82
1
12
3
0.86
106454259--106454312
27
2.0
26
85
3
72
11
11
7
70
1.34
106455146--106455200
22
2.4
22
78
9
56
32
5
7
54
1.51
106460619--106460945
122
2.7
117
77
9
320
44
16
12
26
1.83
106461740--106461797
18
3.3
18
90
7
84
34
34
17
13
1.89
106467221--106467265
23
2.0
21
87
8
63
26
0
2
71
0.98
106467221--106467265
21
2.1
22
84
12
58
26
0
2
71
0.98
106481180--106481242
13
5.0
13
77
11
69
38
0
1
60
1.07
106481197--106481238
9
4.8
9
88
5
68
38
0
0
61
0.96
106481206--106481244
17
2.3
17
100
0
78
33
0
0
66
0.92
106481196--106481251
26
2.2
26
87
6
78
35
0
1
62
1.06
106481455--106481521
27
2.5
27
85
0
80
58
5
1
34
1.32
106481503--106481540
11
3.4
11
96
3
67
57
0
2
39
1.12
106483142--106483327
73
2.5
73
99
0
363
40
24
6
27
1.80
106483328--106483357
3
10.0
3
100
0
60
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106487563--106487821
73
3.5
73
99
0
509
40
25
6
27
1.79
106489322--106489379
30
1.9
30
89
0
89
41
3
24
31
1.71
106489591--106489622
13
2.5
13
94
0
55
31
0
12
56
1.37
106489717--106489901
50
3.7
50
99
0
361
26
23
32
16
1.96
106494455--106494495
21
2.0
21
90
0
64
19
29
21
29
1.98
106504052--106504110
28
2.1
28
84
3
75
64
6
3
25
1.34
106505003--106505045
23
1.9
23
90
4
61
34
23
13
27
1.93
106511684--106511729
23
2.0
23
87
8
67
45
4
8
41
1.55
106511686--106511738
23
2.5
20
75
18
54
43
5
7
43
1.56
106513216--106513399
51
3.7
49
78
14
178
23
17
27
32
1.97
106513323--106513403
26
3.2
26
64
22
62
22
14
28
34
1.94
106513411--106513622
43
5.0
42
78
12
229
23
17
24
34
1.96
106513411--106513622
85
2.5
85
94
0
372
23
17
24
34
1.96
106518269--106518327
31
1.9
31
92
0
100
44
13
10
32
1.77
106521096--106521140
21
2.3
19
84
7
54
53
8
0
37
1.32
106524811--106524877
31
2.2
30
79
7
73
44
5
11
37
1.66
106529843--106529901
31
1.9
31
92
0
100
44
13
10
32
1.77
106531335--106531367
11
3.0
11
100
0
66
9
9
18
63
1.49
106532675--106532719
21
2.3
19
84
7
54
53
8
0
37
1.32
106538911--106539097
69
2.7
70
83
5
236
26
10
20
42
1.85
106559368--106559400
15
2.1
17
88
11
52
27
24
12
36
1.91
106562517--106562555
20
2.0
20
89
0
60
41
0
5
53
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106566895--106566960
31
2.2
31
83
2
80
42
13
3
40
1.60
106568787--106568822
17
2.1
17
90
10
56
13
11
0
75
1.06
106568787--106568834
16
2.9
18
82
14
59
16
12
0
70
1.16
106570279--106570353
35
2.0
36
82
10
89
54
4
1
40
1.27
106597698--106598095
152
2.5
158
83
7
506
27
14
14
43
1.84
106602624--106602661
12
2.9
14
76
15
53
28
5
13
52
1.61
106603463--106603513
15
3.5
15
69
15
52
54
9
7
27
1.60
106624638--106624684
24
2.0
24
95
0
85
48
2
12
36
1.53
106633784--106633818
17
2.1
17
88
0
52
31
14
17
37
1.89
106633920--106633959
12
3.5
12
78
21
50
37
5
0
57
1.21
106633920--106633970
24
2.1
24
89
7
77
37
3
0
58
1.16
106637401--106637453
27
2.0
25
85
7
70
28
1
5
64
1.27
106637999--106638024
13
2.0
13
100
0
52
46
7
0
46
1.31
106640740--106640797
20
2.8
20
80
17
57
53
3
1
41
1.28
106640765--106640838
20
3.8
20
67
15
66
60
0
2
36
1.11
106640766--106640851
38
2.3
38
80
11
97
61
0
3
34
1.13
106668583--106668682
49
2.0
49
94
0
173
38
22
17
23
1.93
106676701--106676759
29
2.0
29
100
0
118
42
10
20
27
1.84
106680012--106680047
17
2.1
17
90
10
56
41
0
0
58
0.98
106680004--106680044
20
2.1
19
86
4
55
39
0
0
60
0.96
106681585--106681650
10
6.3
10
72
16
53
71
6
1
21
1.16
106681618--106681675
10
6.4
9
74
20
50
68
1
3
25
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106687223--106687269
24
2.0
24
95
0
85
21
8
19
51
1.73
106696267--106696315
25
1.9
25
87
4
71
55
10
2
32
1.45
106697018--106697058
18
2.2
20
82
8
50
70
12
2
14
1.26
106702533--106702578
24
1.9
24
90
0
74
39
10
6
43
1.66
106703225--106703268
19
2.2
20
88
8
63
54
6
4
34
1.47
106733101--106733145
24
1.9
24
86
4
65
37
13
4
44
1.64
106734500--106734561
25
2.5
25
100
0
124
37
11
29
22
1.89
106735373--106735413
19
2.1
20
86
4
57
36
9
4
48
1.58
106744644--106744701
9
6.4
9
89
0
80
37
25
12
24
1.90
106744644--106744701
18
3.2
18
87
0
89
37
25
12
24
1.90
106744644--106744701
27
2.1
27
93
0
98
37
25
12
24
1.90
106744809--106744833
13
1.9
13
100
0
50
12
0
48
40
1.40
106744858--106746445
793
2.0
793
100
0
3176
34
17
12
34
1.88
106747149--106747180
16
2.0
16
93
0
55
21
25
9
43
1.82
106751343--106751389
24
1.9
25
82
4
60
59
0
6
34
1.23
106752681--106752705
7
3.6
7
100
0
50
16
40
0
44
1.47
106756296--106756337
22
2.0
21
90
9
68
52
2
0
45
1.13
106765635--106765719
19
4.4
19
86
7
109
36
0
3
60
1.14
106765642--106765719
38
2.1
38
90
4
122
37
0
3
58
1.16
106766741--106766786
19
2.4
19
85
7
58
45
2
13
39
1.55
106774170--106774195
12
2.2
12
100
0
52
30
0
0
69
0.89
106795843--106795913
36
2.0
36
94
0
124
32
7
36
23
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106797689--106797733
6
7.5
6
90
7
65
0
2
15
82
0.77
106799319--106799366
14
3.3
15
80
11
55
50
6
4
39
1.47
106799521--106799546
13
2.0
13
100
0
52
38
7
7
46
1.61
106814309--106814345
4
9.2
4
100
0
74
24
0
24
51
1.49
106819748--106819796
21
2.3
21
96
0
89
32
22
22
22
1.98
106820563--106820980
127
3.3
123
84
5
577
29
18
11
40
1.85
106834721--106834761
21
1.9
22
90
5
66
21
14
4
58
1.55
106848709--106848762
26
2.1
26
93
3
92
14
16
16
51
1.76
106851875--106852014
4
34.5
4
92
2
172
20
4
29
45
1.70
106855136--106855178
18
2.4
18
84
0
59
13
44
0
41
1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322