genome.fa.s2.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  193  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63488025--63488903	48	18.3	48	99	0	1704	33	6	28	31	1.82
63489044--63489146	37	2.8	37	96	0	188	23	20	32	24	1.98
63490246--63490360	56	2.0	58	84	5	153	26	11	14	46	1.79
63490920--63490953	10	3.3	10	84	8	50	20	8	14	55	1.65
63499502--63499545	23	1.9	23	100	0	88	40	18	13	27	1.88
63505939--63506088	43	3.5	42	82	9	137	29	23	19	28	1.98
63505980--63506089	44	2.6	43	85	9	145	30	22	20	26	1.98
63509102--63509274	46	3.7	46	75	14	176	21	19	28	30	1.98
63509096--63509267	93	1.8	93	90	2	274	22	19	28	29	1.98
63511978--63512151	86	2.0	86	98	0	339	37	20	18	23	1.94
63516024--63516128	42	2.4	43	87	7	142	35	25	16	22	1.95
63516049--63516150	44	2.4	42	85	6	125	36	25	15	22	1.94
63531661--63531838	27	6.6	27	77	6	137	30	28	15	25	1.96
63531661--63531838	54	3.3	54	78	7	164	30	28	15	25	1.96
63539673--63539850	27	6.6	27	77	6	137	30	28	15	25	1.96
63539673--63539850	54	3.3	54	78	7	164	30	28	15	25	1.96
63543596--63543667	28	2.6	27	82	6	90	33	25	6	34	1.83
63560673--63560813	31	4.5	31	93	0	246	27	26	16	29	1.97
63561031--63561205	26	6.8	26	86	0	237	28	22	21	27	1.99
63561031--63561205	52	3.4	52	90	1	273	28	22	21	27	1.99
63561255--63561302	20	2.4	20	89	0	78	27	16	14	41	1.87
63562653--63562830	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63562674--63562829	82	1.9	81	88	3	233	29	28	15	26	1.96
63567850--63567995	37	3.9	37	97	0	256	26	31	19	23	1.98
63568158--63568484	47	7.0	47	96	0	573	26	28	11	33	1.92
63572408--63572517	28	3.9	28	85	0	148	35	30	9	24	1.87
63572507--63572608	40	2.5	41	87	3	136	34	22	17	25	1.96
63592117--63592246	66	2.0	65	80	4	145	24	22	28	24	1.99
63601245--63601546	151	2.0	151	100	0	604	22	15	26	35	1.94
63603784--63603814	16	1.9	16	100	0	62	29	25	25	19	1.99
63611088--63611122	17	2.0	18	88	5	54	11	42	31	14	1.81
63612460--63612595	28	4.9	28	90	3	193	29	34	12	23	1.92
63612485--63612534	16	3.4	16	68	21	54	28	40	10	22	1.86
63620248--63620287	20	2.0	20	100	0	80	30	5	35	30	1.79
63622026--63622544	44	11.6	44	68	12	207	33	17	19	29	1.95
63622157--63622542	135	2.8	136	85	1	513	33	17	18	29	1.95
63622715--63622765	22	2.5	22	81	12	63	62	15	5	15	1.50
63623839--63623973	4	33.5	4	64	12	53	24	11	0	63	1.32
63623907--63623999	23	4.0	23	70	10	64	25	9	0	64	1.24
63624020--63624049	15	2.0	15	93	0	51	0	16	0	83	0.65
63624166--63624250	40	2.1	42	80	10	97	16	3	7	72	1.20
63631202--63631340	55	2.4	58	78	7	151	30	23	16	29	1.96
63654227--63654405	85	2.1	85	98	0	349	38	8	26	26	1.85
63662715--63663003	47	6.1	47	87	3	389	30	12	31	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63662716--63662998	141	2.0	141	89	2	431	30	12	31	25	1.93
63662977--63663067	46	2.0	46	84	0	119	32	9	31	25	1.89
63662722--63663052	141	2.3	141	83	6	348	31	12	31	25	1.92
63667694--63667736	15	2.9	14	80	10	50	67	6	9	16	1.40
63667696--63667725	15	2.0	15	93	0	51	70	6	10	13	1.34
63671310--63671349	21	1.9	21	90	10	64	50	12	0	37	1.41
63672345--63672384	2	20.0	2	100	0	80	0	50	0	50	1.00
63684521--63684683	24	6.7	24	75	6	157	23	13	31	31	1.93
63684529--63684668	74	1.9	75	83	7	187	23	12	31	32	1.91
63691323--63691484	47	3.5	47	78	12	131	33	27	13	25	1.93
63691352--63691488	47	2.9	49	83	6	176	33	27	13	24	1.94
63691559--63692567	336	3.0	336	97	0	1883	32	20	8	38	1.83
63695388--63695946	274	2.0	274	99	0	1100	30	19	11	38	1.87
63698295--63698379	41	2.0	42	84	2	109	29	24	18	27	1.98
63706591--63706632	20	2.2	19	83	12	50	16	19	4	59	1.54
63719051--63719093	11	3.9	11	93	0	77	41	18	0	39	1.51
63719019--63719093	32	2.3	33	86	2	98	41	17	1	40	1.58
63719026--63719093	22	3.1	22	81	8	77	38	17	1	42	1.59
63720312--63720354	7	6.0	7	86	2	59	25	4	13	55	1.58
63720312--63720368	21	2.7	20	78	8	60	26	3	14	56	1.54
63720350--63720374	7	3.6	7	100	0	50	28	0	16	56	1.41
63727330--63727358	12	2.3	13	94	5	51	65	6	6	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63731819--63732035	40	5.5	40	86	3	271	24	27	23	23	2.00
63738972--63739352	126	3.0	126	90	0	618	28	19	17	34	1.94
63739890--63739960	19	3.8	19	83	12	103	42	21	0	36	1.53
63740392--63740455	31	2.1	31	93	0	110	45	3	3	48	1.34
63740489--63740537	25	1.9	26	83	4	64	59	6	0	34	1.22
63745794--63745941	40	3.7	40	94	0	251	21	27	20	30	1.98
63754406--63754553	40	3.7	40	92	0	242	20	27	21	30	1.98
63767481--63767578	28	3.5	28	81	2	108	32	26	13	27	1.93
63767481--63767547	27	2.4	27	85	2	89	34	25	11	28	1.91
63770467--63770545	37	2.1	37	88	4	115	25	30	18	25	1.98
63770664--63771199	47	11.4	47	96	0	964	29	29	8	32	1.87
63774164--63774266	42	2.4	42	82	4	118	28	26	19	26	1.99
63774782--63774846	28	2.4	29	73	17	68	35	23	4	36	1.75
63779135--63779319	79	2.3	81	84	7	236	25	27	22	24	2.00
63779135--63779319	40	4.7	40	83	7	234	25	27	22	24	2.00
63787105--63787289	79	2.3	81	84	7	236	25	27	22	24	2.00
63787105--63787289	40	4.7	40	83	7	234	25	27	22	24	2.00
63798671--63798712	19	2.2	19	100	0	84	45	9	7	38	1.64
63803624--63803932	48	6.5	48	77	9	217	24	27	20	27	1.99
63803629--63803888	49	5.4	49	76	11	220	24	27	20	27	1.99
63803629--63803888	92	2.7	98	78	7	239	24	27	20	27	1.99
63803812--63803932	46	2.5	48	84	4	147	23	29	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63807576--63807749	49	3.6	48	78	5	172	23	23	21	31	1.99
63807764--63807940	46	3.8	45	83	9	171	22	28	20	28	1.98
63809358--63809511	43	3.7	42	75	8	152	25	18	25	30	1.98
63809382--63809487	41	2.5	42	79	10	110	27	16	23	33	1.95
63812727--63812843	57	2.1	57	90	3	182	47	5	17	29	1.71
63815867--63815978	43	2.6	42	83	4	127	25	16	25	31	1.97
63821137--63821220	43	2.0	43	92	0	141	22	15	29	32	1.95
63821265--63821364	51	2.0	51	81	0	119	25	16	28	31	1.96
63826031--63826109	40	2.0	40	89	0	122	34	32	18	13	1.91
63829652--63829751	24	4.2	24	89	1	130	19	35	5	41	1.73
63836959--63836993	11	3.0	12	87	8	54	31	20	8	40	1.82
63839640--63839745	24	4.4	24	89	1	149	19	38	4	36	1.73
63845763--63845850	40	2.3	39	82	4	97	31	34	19	14	1.92
63845773--63845851	40	2.0	40	84	0	104	30	31	20	17	1.96
63849448--63849482	18	1.9	18	94	0	61	17	8	0	74	1.06
63852862--63852891	16	1.9	15	93	6	51	73	0	3	23	0.98
63853549--63853611	24	2.7	24	85	2	74	68	7	4	19	1.33
63854176--63854205	2	15.5	2	93	6	53	0	50	0	50	1.00
63854978--63855024	18	2.7	18	80	3	60	12	42	27	17	1.85
63856871--63856917	24	2.0	24	83	8	60	29	4	2	63	1.25
63857883--63857943	19	3.1	19	73	13	52	31	1	4	62	1.26
63858587--63858654	20	3.4	20	74	11	59	38	7	10	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63858702--63858753	26	2.0	26	88	0	77	44	5	3	46	1.45
63861165--63861204	19	2.1	19	85	4	53	45	0	0	55	0.99
63867493--63867541	10	5.3	10	81	18	70	69	0	0	30	0.89
63867492--63867541	18	2.7	19	90	9	86	68	0	0	32	0.90
63867557--63867625	30	2.3	29	79	18	72	63	7	1	27	1.29
63867579--63867625	10	4.8	10	79	10	53	65	2	2	29	1.15
63867641--63867675	10	3.5	10	92	0	52	57	2	0	40	1.14
63867663--63867692	9	3.3	9	95	0	51	60	16	0	23	1.36
63879847--63879925	20	4.0	20	85	3	97	31	10	8	49	1.67
63879847--63879925	39	2.0	40	82	2	97	31	10	8	49	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322