genome.fa.s2.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  222  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73372055--73372228	46	3.7	47	79	15	218	30	29	20	20	1.97
73374471--73374530	13	4.2	14	74	15	52	61	0	0	38	0.96
73374508--73374533	13	2.0	13	100	0	52	53	0	0	46	1.00
73374601--73374685	22	3.9	22	76	14	86	57	1	0	41	1.06
73374610--73374683	21	3.4	21	84	15	96	58	0	0	41	0.98
73374743--73374792	21	2.5	20	93	6	84	78	4	4	14	1.05
73380600--73380772	46	3.7	46	77	13	201	21	21	27	29	1.99
73380597--73380767	93	1.8	93	94	0	306	21	21	28	28	1.99
73390621--73390670	22	2.3	22	96	0	91	32	22	22	24	1.98
73394467--73394528	31	2.0	31	93	0	106	27	17	20	33	1.96
73401464--73401517	21	2.6	21	87	0	81	35	9	33	22	1.86
73404705--73404774	34	2.1	34	97	0	131	51	8	18	21	1.72
73405272--73405325	24	2.2	25	77	6	67	38	27	16	16	1.90
73407398--73407430	10	3.3	10	100	0	66	30	12	9	48	1.71
73409444--73409678	43	5.7	42	76	13	229	31	25	17	25	1.97
73409532--73409688	77	2.0	77	92	0	260	32	24	17	26	1.96
73410805--73410833	14	2.0	15	93	6	51	51	20	0	27	1.47
73416965--73417227	40	6.6	39	86	4	278	25	27	21	25	1.99
73416965--73417227	120	2.2	119	82	4	307	25	27	21	25	1.99
73417159--73417236	40	1.9	41	82	10	97	26	28	20	24	1.99
73424911--73425178	40	6.7	40	97	0	491	23	27	19	29	1.98
73429987--73430065	38	2.1	38	97	0	149	17	8	16	56	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73430444--73430493	24	2.1	24	85	7	66	14	20	18	48	1.82
73452097--73452177	29	2.8	30	85	7	96	44	9	20	24	1.82
73452290--73452370	28	2.9	28	79	3	81	45	6	20	27	1.75
73451944--73452639	229	3.0	230	94	1	1241	39	11	19	29	1.87
73452326--73452406	29	2.8	30	85	7	96	44	9	20	24	1.82
73452577--73452640	29	2.2	30	86	10	89	43	12	21	21	1.86
73456281--73456361	40	2.0	40	100	0	162	40	4	17	37	1.71
73458580--73458640	28	2.2	28	84	0	86	32	19	21	26	1.97
73461504--73461546	20	2.2	20	86	0	59	9	23	0	67	1.19
73465413--73465515	43	2.4	43	84	9	138	27	15	23	33	1.95
73477563--73477842	40	7.0	38	89	6	321	28	26	22	23	1.99
73477583--73477841	80	3.2	80	91	2	378	28	25	22	23	1.99
73477560--73477845	120	2.4	118	86	6	371	27	26	21	23	1.99
73484750--73484800	21	2.4	21	87	6	68	41	3	31	23	1.73
73487034--73487988	81	11.8	81	95	2	1557	25	24	25	24	2.00
73491845--73491961	41	2.9	39	75	12	103	28	27	20	23	1.99
73500163--73500339	47	3.7	46	78	12	151	25	29	18	26	1.98
73500307--73500521	46	4.7	44	80	9	182	23	30	19	26	1.98
73500164--73500526	94	3.9	96	76	11	317	25	29	18	26	1.98
73505598--73505770	46	3.8	44	77	14	172	22	19	27	30	1.98
73505595--73505765	93	1.8	93	88	5	265	22	19	28	29	1.98
73512711--73512882	46	3.7	45	77	13	179	23	19	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73512707--73512878	93	1.8	93	89	0	272	23	19	27	29	1.98
73514217--73514683	234	2.0	234	96	0	871	32	22	9	36	1.86
73516462--73516517	22	2.5	22	80	8	60	32	5	5	57	1.44
73516578--73516623	24	1.9	24	100	0	92	39	0	2	58	1.10
73519846--73519928	34	2.5	34	92	5	136	36	27	6	30	1.81
73521557--73521739	51	3.7	50	79	3	156	25	17	25	31	1.97
73540640--73540783	24	6.0	24	90	2	218	26	21	22	29	1.99
73540835--73540899	20	3.2	20	93	0	112	32	21	12	33	1.90
73540835--73540888	11	5.3	11	70	17	53	31	20	12	35	1.90
73543198--73543241	15	3.1	15	87	6	56	54	4	0	40	1.21
73543255--73543298	19	2.4	18	85	7	54	40	9	0	50	1.34
73544870--73544994	48	2.6	48	87	1	180	32	15	21	31	1.94
73544958--73545034	38	2.0	38	94	0	136	28	15	27	28	1.96
73548425--73548789	47	7.7	47	99	0	721	31	8	29	29	1.87
73550149--73550380	40	5.8	40	89	0	338	24	21	28	26	1.99
73552977--73553109	69	1.9	70	90	1	214	32	14	16	36	1.89
73554437--73554886	47	9.6	47	97	0	828	32	8	30	29	1.86
73555682--73556835	495	2.3	495	99	0	2267	29	13	20	36	1.91
73561524--73561591	34	2.0	35	88	2	102	25	23	22	29	1.99
73561527--73561613	34	2.6	34	80	7	97	24	24	24	27	2.00
73564218--73564439	41	5.6	39	83	2	167	24	26	23	25	2.00
73564254--73564439	41	4.6	41	87	3	234	24	26	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73564284--73564437	81	1.9	82	87	4	231	25	25	24	24	2.00
73566246--73566353	42	2.6	42	82	5	112	33	25	15	25	1.95
73569287--73569417	40	3.3	40	80	2	138	36	16	25	22	1.94
73574814--73574873	25	2.4	25	88	0	93	23	28	20	28	1.99
73574803--73574873	25	2.9	24	79	6	79	28	28	18	25	1.98
73574814--73574880	25	2.7	24	81	6	80	28	25	17	28	1.98
73574814--73574900	25	3.5	24	76	14	70	26	25	20	27	1.99
73575652--73575730	38	2.1	38	97	0	149	15	35	18	30	1.92
73582742--73582811	25	2.8	25	84	0	86	28	27	18	25	1.98
73582767--73582818	25	2.1	25	85	3	70	34	21	15	28	1.94
73585250--73585548	138	2.2	138	83	6	374	26	17	30	26	1.97
73585247--73585513	46	5.7	46	75	9	202	26	17	30	25	1.97
73589671--73589778	54	2.0	54	98	0	207	31	17	24	26	1.97
73593027--73593201	46	3.8	45	77	8	183	21	20	28	30	1.98
73593021--73593193	92	1.9	93	89	3	269	20	20	29	29	1.98
73598176--73598283	20	5.4	20	69	2	83	38	18	17	25	1.92
73598124--73598299	40	4.4	40	74	4	122	35	19	21	23	1.96
73600276--73600396	44	2.7	44	83	3	145	33	33	14	19	1.91
73601198--73601475	50	5.5	50	79	2	270	31	25	17	25	1.97
73601247--73601428	101	1.8	101	91	0	301	29	24	19	26	1.98
73605903--73605988	23	3.7	23	69	20	72	34	18	25	20	1.96
73607405--73607434	15	2.0	15	93	0	51	53	0	43	3	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73610183--73610275	44	2.1	44	95	0	168	54	11	4	29	1.55
73620619--73620722	50	2.0	53	92	7	178	33	8	5	51	1.56
73625491--73625646	39	4.1	39	80	9	164	15	30	16	37	1.90
73625491--73625665	39	4.6	38	78	8	153	16	30	16	36	1.91
73629069--73629236	47	3.6	47	78	16	222	30	27	18	23	1.98
73629023--73629285	93	2.8	93	98	0	508	29	28	19	22	1.98
73629014--73629282	46	5.8	46	76	17	288	30	28	19	22	1.98
73631705--73631760	26	2.2	26	96	0	103	14	37	35	12	1.84
73632470--73632500	16	1.9	16	93	0	53	54	25	3	16	1.56
73636637--73636722	43	2.0	43	100	0	172	41	13	9	34	1.77
73641659--73641802	50	2.8	51	85	2	173	32	28	13	25	1.93
73643593--73643716	28	4.4	28	85	0	131	32	28	10	29	1.90
73645178--73645221	22	2.0	22	82	8	54	43	2	0	54	1.12
73645188--73645231	22	2.0	22	90	0	70	34	2	2	61	1.21
73650447--73650515	27	2.6	26	81	6	75	21	24	15	37	1.93
73659556--73659613	30	2.0	30	96	3	109	25	17	25	31	1.97
73666103--73666223	63	1.9	63	83	3	154	40	10	23	25	1.87
73667266--73667321	28	2.0	28	100	0	112	28	17	17	35	1.93
73668727--73668764	17	2.2	18	95	4	69	15	5	2	76	1.08
73671942--73672035	41	2.3	41	85	3	118	23	20	22	34	1.97
73673573--73673602	3	10.0	3	92	0	51	0	30	0	70	0.88
73675837--73675966	47	2.8	47	85	0	152	23	14	26	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73677114--73677141	13	2.2	13	100	0	56	25	25	35	14	1.93
73679778--73680203	40	10.7	40	89	0	651	24	21	27	26	1.99
73682621--73682664	19	2.4	19	85	7	56	50	0	9	40	1.34
73689542--73689582	8	5.1	8	84	0	55	48	14	29	7	1.71
73689813--73689873	27	2.3	27	97	0	113	26	22	32	18	1.97
73693510--73693639	47	2.8	47	83	2	145	26	14	26	32	1.95
73699350--73699388	18	2.1	19	86	13	55	41	0	28	30	1.57
73702885--73703037	43	3.6	43	81	5	175	26	13	26	33	1.94
73725840--73725930	45	2.0	45	95	0	164	38	16	5	39	1.72
73726711--73726770	25	2.4	25	82	0	75	28	23	16	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322