genome.fa.s2.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  282  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93577804--93578018	92	2.3	96	82	8	244	21	31	17	28	1.96
93579984--93580011	13	2.2	13	100	0	56	46	7	0	46	1.30
93590476--93590760	47	6.1	47	94	0	455	34	10	28	26	1.89
93590505--93590623	22	5.1	22	63	25	66	33	13	28	24	1.93
93590548--93590717	22	7.3	22	64	30	70	34	11	28	25	1.91
93590734--93590870	46	3.0	46	91	0	220	34	8	31	25	1.86
93593104--93593240	60	2.3	59	82	8	152	25	23	20	30	1.98
93598870--93598983	37	2.9	40	71	10	110	29	25	16	28	1.97
93606469--93606533	24	2.7	25	75	18	66	43	4	3	49	1.39
93617072--93617109	16	2.4	16	86	8	51	65	0	0	34	0.93
93621224--93621277	26	2.2	26	87	12	78	72	1	24	1	1.05
93621239--93621277	12	3.4	11	82	10	51	74	0	23	2	0.94
93625034--93625162	46	2.8	45	85	5	177	27	22	30	20	1.98
93625037--93625206	46	3.7	42	81	11	160	26	20	30	22	1.98
93628305--93628407	37	2.8	37	89	0	161	23	17	32	27	1.97
93633895--93633928	13	2.8	12	91	8	59	0	8	0	91	0.43
93635328--93635352	3	8.3	3	100	0	50	68	0	32	0	0.90
93635370--93635487	48	2.5	48	90	2	184	31	22	20	25	1.98
93636966--93637073	26	4.2	26	90	4	173	33	7	23	36	1.83
93644042--93644149	26	4.2	26	93	0	189	32	7	24	36	1.83
93646820--93646856	3	12.3	3	88	0	56	0	32	0	67	0.91
93646865--93646897	11	3.0	11	100	0	66	9	0	27	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93646923--93646963	21	2.0	21	95	0	73	29	29	17	24	1.97
93649804--93649866	31	2.0	31	96	0	117	50	15	7	25	1.71
93651481--93652137	180	3.7	176	81	7	711	28	24	16	29	1.97
93652007--93652433	147	2.9	147	85	3	579	26	24	16	32	1.96
93652880--93653073	64	3.0	64	90	0	298	39	10	16	32	1.83
93654197--93654244	20	2.4	21	79	10	55	4	14	0	81	0.84
93654920--93654949	11	2.7	11	94	0	51	0	0	13	86	0.57
93669619--93669785	43	3.9	43	79	6	169	28	14	23	32	1.95
93677521--93677705	79	2.3	81	84	7	236	24	22	27	25	2.00
93677522--93677705	40	4.6	40	83	9	216	24	22	27	25	2.00
93677574--93677738	79	2.1	79	84	6	210	26	21	27	25	1.99
93680261--93680300	20	2.0	20	100	0	80	10	15	5	70	1.32
93683512--93683550	21	1.9	20	89	5	60	46	20	0	33	1.51
93684587--93684627	20	2.0	20	100	0	82	36	24	4	34	1.77
93685253--93685338	43	2.0	43	81	4	102	23	23	1	52	1.54
93688783--93688882	41	2.4	41	86	0	146	33	26	20	21	1.97
93690838--93690948	27	4.1	27	86	0	132	32	17	19	30	1.95
93690930--93691161	27	8.6	27	80	6	218	43	19	7	29	1.78
93690903--93691216	54	5.8	52	74	11	211	40	19	9	30	1.83
93690930--93691216	81	3.5	81	77	5	240	41	20	8	29	1.81
93691010--93691188	27	6.6	27	79	10	87	44	18	7	29	1.77
93691638--93691691	22	2.5	22	76	11	65	18	24	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93691801--93691872	32	2.2	32	80	4	74	29	18	22	30	1.97
93695797--93695979	79	2.3	81	84	7	232	25	27	22	24	2.00
93695776--93695979	40	5.1	40	82	8	238	25	27	22	24	2.00
93696678--93696797	56	2.1	56	96	0	222	21	23	9	45	1.80
93697335--93697374	21	1.9	21	90	10	64	57	7	5	30	1.48
93713607--93713691	42	2.0	42	100	0	170	36	14	4	44	1.66
93714846--93714922	33	2.4	33	82	2	93	29	14	27	28	1.95
93729473--93729890	209	2.0	209	98	0	800	38	20	9	32	1.84
93736931--93737105	50	3.6	49	84	4	210	25	30	16	27	1.96
93736932--93737114	98	1.9	97	84	6	244	26	30	15	27	1.96
93738610--93738731	46	2.6	46	80	5	120	24	30	18	26	1.98
93742808--93742854	17	2.8	18	84	9	55	51	0	6	42	1.27
93746179--93746235	30	1.9	29	89	3	87	35	21	0	43	1.52
93747035--93747064	15	2.0	15	100	0	60	40	6	13	40	1.71
93754131--93754411	38	7.3	38	86	2	375	20	20	29	30	1.97
93754131--93754411	77	3.7	76	88	2	384	20	20	29	30	1.97
93754130--93754386	115	2.2	115	91	2	417	21	21	29	28	1.98
93774337--93774630	39	7.5	39	91	1	432	19	21	28	29	1.98
93774338--93774630	154	1.9	157	90	3	468	19	21	29	29	1.98
93775214--93775413	101	2.0	101	98	0	391	38	11	18	31	1.86
93776517--93776576	30	2.0	30	83	3	75	13	11	11	63	1.53
93781967--93782100	46	2.9	46	76	17	159	25	14	19	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93790819--93790977	73	2.2	73	90	0	246	25	20	28	25	1.99
93796469--93796507	21	1.9	21	89	5	62	10	33	30	25	1.89
93803304--93803461	43	3.7	43	81	8	169	22	15	28	33	1.94
93810607--93810709	42	2.4	43	85	3	127	29	17	22	31	1.97
93810607--93810719	43	2.6	42	84	2	127	28	18	23	30	1.98
93811864--93812288	212	2.0	212	100	0	850	25	23	24	27	2.00
93816757--93816793	15	2.4	16	86	13	51	27	2	0	70	1.01
93822677--93822916	106	2.3	101	82	13	272	59	13	0	25	1.40
93822709--93822913	106	1.9	106	86	8	286	58	13	0	27	1.42
93868021--93868171	75	2.0	75	96	0	275	38	15	24	21	1.92
93873351--93873401	17	2.9	17	73	2	57	68	3	1	25	1.17
93873820--93873867	18	2.6	18	90	3	69	25	2	0	72	0.95
93877922--93877969	25	1.9	25	82	0	60	31	0	20	47	1.50
93878884--93879166	18	15.3	18	73	10	176	36	14	12	36	1.84
93878875--93879166	36	7.9	36	71	10	194	36	14	11	36	1.83
93879270--93879374	45	2.3	45	86	3	140	43	16	17	22	1.87
93879352--93879386	6	5.8	6	100	0	70	48	17	17	17	1.81
93880364--93880399	18	1.9	19	88	5	56	47	0	16	36	1.47
93883450--93883520	31	2.3	31	87	0	106	16	42	23	16	1.89
93887516--93887788	137	2.0	137	95	0	492	38	14	11	35	1.83
93887676--93887901	111	2.0	111	100	0	452	41	11	10	36	1.76
93888384--93888458	22	3.3	22	64	29	57	30	13	30	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93888358--93889506	47	24.1	47	93	3	1938	30	12	30	26	1.93
93889480--93889570	46	2.0	46	86	0	128	31	9	32	25	1.89
93889715--93889815	37	2.7	37	93	0	175	23	19	30	25	1.98
93892996--93893153	47	3.4	48	94	3	277	27	10	13	47	1.77
93893955--93894089	45	3.0	45	91	3	209	23	20	27	28	1.99
93897173--93897211	20	2.1	19	90	9	62	5	25	15	53	1.62
93910965--93911012	24	2.0	24	100	0	96	37	4	20	37	1.72
93914830--93914967	43	3.2	42	78	8	145	28	22	20	28	1.98
93914831--93914922	42	2.2	43	86	5	125	28	22	20	28	1.99
93919358--93919484	64	2.0	64	96	0	236	29	25	18	25	1.98
93919363--93919487	34	3.8	34	68	21	95	29	26	18	25	1.98
93919504--93919616	6	18.3	6	69	18	72	48	15	16	19	1.81
93919518--93919616	25	3.7	25	77	15	108	48	15	17	19	1.81
93919549--93919606	19	3.4	19	65	30	58	46	17	17	18	1.84
93919546--93919616	31	2.3	31	100	0	142	49	15	15	19	1.80
93920018--93920186	27	6.3	27	90	0	257	21	23	21	33	1.97
93920018--93920213	81	2.4	81	85	5	245	23	21	21	33	1.98
93920171--93920259	27	3.3	27	85	0	106	30	10	22	37	1.87
93920209--93920269	27	2.3	27	82	0	68	34	9	13	42	1.77
93920277--93920367	27	3.4	27	90	0	146	39	7	26	26	1.83
93920378--93920519	27	5.3	27	78	6	144	30	7	21	40	1.81
93920369--93920519	81	1.9	81	85	0	212	30	7	21	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93920629--93920792	84	2.0	84	98	0	319	32	28	15	23	1.95
93925315--93925428	40	2.8	40	92	2	167	28	24	21	26	1.99
93936579--93936728	67	2.2	67	81	8	171	32	17	28	21	1.96
93936603--93936786	67	2.8	64	77	8	194	29	17	29	22	1.97
93941026--93941175	67	2.2	67	81	8	171	32	17	28	21	1.96
93941050--93941233	67	2.8	64	77	8	194	29	17	29	22	1.97
93945301--93945409	28	4.0	27	77	8	96	25	20	20	33	1.96
93948379--93948486	39	2.7	39	89	1	153	18	25	28	26	1.98
93948398--93948534	39	3.5	39	85	1	166	17	22	29	30	1.97
93948973--93949086	56	2.0	56	96	0	210	40	11	21	26	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322