Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  317  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105125230--105125258
13
2.2
13
100
0
58
27
0
10
62
1.28
105131288--105131352
32
2.0
32
100
0
130
24
33
15
26
1.95
105131576--105131609
17
2.0
17
100
0
68
35
23
23
17
1.95
105136371--105136477
55
1.9
55
94
0
187
42
21
11
25
1.86
105140779--105140809
12
2.6
12
100
0
62
25
16
12
45
1.83
105140857--105140897
16
2.8
14
85
10
55
4
17
0
78
0.93
105141818--105141883
12
5.7
11
87
8
96
13
3
7
75
1.13
105141818--105141884
11
5.7
12
89
7
102
13
2
7
76
1.12
105141818--105141884
23
2.8
24
91
6
102
13
2
7
76
1.12
105147860--105148028
82
2.0
84
95
4
306
36
21
5
35
1.78
105153838--105153931
46
2.0
46
100
0
188
29
36
12
21
1.91
105156033--105156210
27
6.6
27
81
5
171
28
28
16
26
1.97
105156054--105156209
82
1.9
81
86
3
224
28
28
16
26
1.97
105159694--105159790
30
3.2
30
72
8
99
28
16
26
27
1.97
105163861--105163918
20
2.9
20
81
0
71
32
36
12
18
1.88
105167647--105167681
10
3.5
10
88
0
52
37
22
25
14
1.92
105167644--105167691
20
2.4
20
75
0
60
31
18
29
20
1.97
105174254--105174319
21
3.0
22
86
4
80
30
4
30
34
1.78
105177641--105177706
21
3.0
22
86
4
80
28
4
30
36
1.77
105180316--105180378
21
3.0
21
88
2
90
30
3
33
33
1.74
105191004--105191039
11
3.0
12
88
12
56
19
8
0
72
1.10
105191008--105191038
12
2.7
12
95
5
55
16
6
0
77
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105191356--105191399
21
2.1
21
86
0
61
34
4
31
29
1.78
105191366--105191423
22
2.6
22
86
5
73
31
5
31
32
1.80
105192744--105192790
20
2.3
20
81
0
58
29
34
12
23
1.92
105195914--105195953
19
2.1
19
100
0
80
35
12
10
42
1.76
105200897--105200979
31
2.7
31
85
3
116
28
22
14
33
1.94
105201192--105201267
24
3.1
25
84
5
102
26
19
22
31
1.98
105202077--105202142
27
2.4
27
85
5
89
19
22
19
37
1.94
105202193--105202395
27
7.4
27
76
10
119
33
8
18
39
1.81
105202180--105202380
54
3.7
55
75
12
164
32
9
16
41
1.81
105202374--105202530
27
5.8
27
90
0
242
38
7
24
29
1.83
105202345--105202521
81
2.2
81
85
0
228
37
7
23
31
1.83
105202374--105202530
81
1.9
81
93
0
269
38
7
24
29
1.83
105202363--105202541
81
2.2
81
87
0
268
36
7
24
32
1.83
105210647--105210690
22
2.0
22
90
0
70
27
34
4
34
1.77
105213729--105213833
43
2.4
43
91
0
165
29
18
21
30
1.97
105216209--105216468
130
2.0
130
98
0
502
39
19
16
25
1.91
105217407--105217459
23
2.4
22
76
20
56
9
18
1
69
1.25
105217436--105217483
18
2.8
17
79
14
55
10
31
0
58
1.32
105217454--105217509
27
2.1
27
86
0
76
7
30
0
62
1.22
105226925--105227006
30
2.7
30
70
7
85
26
17
28
28
1.97
105230783--105231072
49
5.9
49
94
2
512
32
8
29
29
1.86
105239201--105239240
19
2.1
19
85
0
53
30
35
12
22
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105240481--105240528
14
3.4
14
85
0
60
18
31
6
43
1.75
105240931--105241190
69
3.8
69
100
0
520
36
6
9
47
1.60
105241208--105241250
11
3.9
11
78
0
50
76
2
2
18
1.00
105243359--105243392
12
2.8
12
81
0
50
44
0
38
17
1.49
105243351--105243430
38
2.2
36
82
8
90
55
1
30
13
1.47
105244646--105244694
10
4.8
10
80
14
55
40
22
22
14
1.90
105244646--105244694
21
2.4
21
89
3
73
40
22
22
14
1.90
105249615--105249676
32
1.9
32
96
0
115
38
22
9
29
1.86
105255581--105255605
9
2.8
9
100
0
50
48
44
8
0
1.32
105273578--105273619
15
2.9
15
76
23
54
26
11
2
59
1.45
105276307--105276348
16
2.6
16
92
0
66
23
28
21
26
1.99
105276323--105276420
38
2.5
39
91
3
153
19
23
26
30
1.98
105280627--105280660
15
2.3
15
90
5
52
67
0
0
32
0.91
105282169--105282210
4
10.8
4
79
5
50
71
4
0
23
1.05
105283710--105283789
9
8.4
9
74
9
52
61
1
3
33
1.22
105283710--105283789
18
4.2
18
75
12
63
61
1
3
33
1.22
105283758--105283789
9
3.6
9
95
0
55
59
0
6
34
1.23
105283937--105283976
10
3.9
10
93
3
62
42
0
5
52
1.23
105286236--105286314
30
2.6
30
76
7
81
25
20
27
26
1.99
105290216--105290289
27
2.6
30
77
14
84
37
1
2
58
1.21
105303292--105303354
30
2.1
30
96
0
117
26
3
12
57
1.51
105303478--105303511
12
2.8
12
90
0
50
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105305602--105305631
5
5.8
5
92
7
51
20
0
3
76
0.92
105317722--105317755
6
5.8
6
89
6
52
52
2
0
44
1.16
105317974--105318042
33
2.1
34
94
2
122
39
10
5
44
1.62
105317982--105318049
33
2.1
33
91
0
109
39
11
7
41
1.70
105319852--105319886
16
2.1
17
89
5
54
37
0
0
62
0.95
105324140--105324191
23
2.3
21
73
23
52
46
5
0
48
1.26
105325043--105325075
10
3.0
11
86
13
50
42
0
0
57
0.98
105325043--105325084
21
2.0
20
86
9
57
40
0
0
59
0.97
105326385--105326420
17
2.1
18
89
5
56
27
0
0
72
0.85
105327831--105327886
29
1.9
29
86
13
80
23
0
1
75
0.90
105327835--105327876
17
2.6
16
88
7
66
19
0
2
78
0.86
105331045--105331069
2
12.5
2
100
0
50
48
0
0
52
1.00
105334703--105334754
24
2.2
24
92
0
86
25
28
17
28
1.97
105340843--105340897
16
3.4
16
82
5
67
60
0
1
38
1.08
105341373--105341464
30
3.0
30
75
19
84
52
7
11
28
1.65
105351184--105351232
24
2.1
23
96
3
89
16
2
16
65
1.37
105364277--105364510
104
2.2
104
84
3
301
23
23
31
20
1.98
105364458--105364552
42
2.3
42
83
0
109
22
20
42
15
1.89
105376554--105376606
22
2.4
22
93
3
88
28
18
16
35
1.93
105387865--105388238
41
9.1
41
88
0
541
33
20
22
23
1.97
105394854--105394879
10
2.6
10
100
0
52
34
0
0
65
0.93
105395178--105395202
11
2.3
11
100
0
50
44
24
8
24
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105395570--105395737
48
3.6
46
71
18
134
26
17
25
30
1.97
105397944--105398068
58
2.2
58
86
2
171
26
24
14
35
1.93
105397964--105398087
58
2.1
58
83
2
151
25
25
12
36
1.91
105400339--105400437
39
2.5
39
93
0
171
25
23
26
25
2.00
105400976--105401486
256
2.0
256
98
0
995
24
13
22
38
1.91
105401478--105401515
17
2.2
17
100
0
76
21
10
31
36
1.87
105408832--105408979
39
3.8
39
91
0
242
27
21
24
26
1.99
105411661--105411733
26
2.8
26
85
4
103
36
13
8
41
1.75
105414431--105414474
19
2.4
19
85
7
56
50
0
9
40
1.34
105416870--105416917
25
1.9
25
91
0
78
35
25
14
25
1.94
105416965--105417020
11
5.5
11
71
16
57
35
14
19
30
1.91
105416954--105417020
20
3.3
20
89
0
107
34
13
20
31
1.92
105417070--105417189
24
5.0
24
87
3
170
30
21
20
27
1.98
105431093--105431137
21
2.2
21
96
4
83
68
4
0
26
1.08
105431321--105431445
44
2.9
44
86
4
182
33
11
24
31
1.90
105431321--105431440
43
2.8
43
88
3
170
33
11
25
30
1.91
105434394--105434438
22
2.0
22
91
8
74
24
20
8
46
1.78
105436940--105436998
23
2.6
23
82
12
77
38
20
1
38
1.63
105448840--105448897
21
2.8
20
79
7
71
37
24
5
32
1.77
105451172--105451334
56
2.9
56
94
0
290
34
15
12
36
1.85
105451851--105451906
21
2.5
23
85
11
80
55
0
3
41
1.17
105451896--105451944
21
2.3
21
78
3
53
69
2
4
24
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105452287--105452350
30
2.1
30
97
0
119
26
3
12
57
1.50
105452400--105452443
23
1.9
23
81
9
54
34
2
6
56
1.38
105452393--105452435
21
1.9
23
86
13
63
34
2
2
60
1.22
105452473--105452505
11
2.9
12
86
13
52
66
0
0
33
0.92
105454237--105454275
3
13.0
3
94
0
69
64
0
2
33
1.08
105458442--105458573
21
6.0
21
78
13
131
28
28
9
33
1.89
105458442--105458599
48
3.4
45
86
8
205
29
27
10
32
1.89
105458472--105458626
27
6.1
27
71
19
118
28
28
9
33
1.89
105463688--105463731
20
2.2
20
83
4
52
50
11
0
38
1.39
105477427--105477479
18
3.0
17
83
5
70
30
1
3
64
1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322