genome.fa.s2.2.7.7.80.10.50.1000.275.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  275  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91351669--91352677	502	2.0	505	96	0	1853	33	28	12	26	1.92
91352585--91352771	93	2.0	94	94	1	331	31	31	10	27	1.90
91352821--91352845	13	1.9	13	100	0	50	0	8	4	88	0.64
91368888--91368995	43	2.5	43	83	3	137	27	13	20	37	1.91
91374237--91374408	43	4.0	43	77	8	188	25	18	25	31	1.98
91378357--91378385	13	2.1	14	93	6	51	34	0	17	48	1.47
91388649--91388737	44	2.0	44	100	0	178	29	21	6	42	1.78
91389246--91389386	39	3.6	39	90	0	210	27	29	19	23	1.98
91389230--91389384	78	2.0	78	90	0	247	27	30	20	21	1.98
91392209--91392420	28	7.5	28	72	3	172	28	35	18	16	1.93
91392179--91392422	57	4.2	57	90	1	380	28	36	17	17	1.93
91392179--91392392	29	7.4	29	70	4	155	29	36	16	17	1.92
91394681--91394757	39	2.0	39	92	0	127	24	31	22	22	1.98
91396827--91396890	31	2.1	31	90	0	101	21	23	17	37	1.94
91397096--91397222	47	2.7	47	92	4	211	29	22	20	27	1.99
91397082--91397221	24	6.0	23	90	5	210	29	22	21	26	1.99
91397272--91397338	20	3.3	20	89	0	107	32	20	13	32	1.92
91401627--91401760	70	1.9	70	95	0	241	33	12	19	34	1.90
91402352--91402421	28	2.5	28	90	4	106	27	12	27	32	1.93
91411626--91411665	12	3.2	13	86	13	57	15	5	0	80	0.88
91411629--91411670	18	2.5	17	92	7	68	14	2	0	83	0.75
91412809--91412906	48	2.0	48	98	0	187	31	22	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91414828--91414861	16	2.1	16	88	0	50	17	11	0	70	1.16
91415085--91415162	38	2.1	38	97	0	147	41	6	10	42	1.64
91415091--91415171	38	2.1	38	90	0	126	46	6	7	39	1.57
91424517--91424658	59	2.4	59	93	0	239	30	16	19	32	1.95
91432319--91432347	14	2.1	14	93	6	51	34	0	10	55	1.34
91432768--91432808	21	2.0	21	95	0	73	29	14	53	2	1.54
91433064--91433129	31	2.1	31	88	0	96	19	10	21	48	1.79
91433206--91433407	43	4.7	43	83	2	210	25	24	18	31	1.97
91433697--91433729	16	2.1	16	94	0	57	12	9	36	42	1.74
91435816--91435857	16	2.6	16	84	0	57	14	21	26	38	1.91
91435843--91436036	38	5.1	38	78	0	208	17	22	26	34	1.95
91436737--91437109	185	2.0	186	87	1	534	23	26	26	24	2.00
91439695--91439797	44	2.4	43	85	3	134	21	19	21	37	1.94
91444015--91444166	40	3.8	40	88	2	207	25	27	21	25	1.99
91452408--91452695	48	6.0	48	79	2	317	27	18	28	26	1.98
91452408--91452691	96	2.9	96	88	1	408	27	17	28	26	1.98
91455558--91455785	47	4.8	47	90	3	332	26	30	10	31	1.91
91472295--91472476	91	2.0	91	97	0	346	39	17	22	21	1.93
91472841--91473149	120	2.6	120	85	5	410	24	27	21	25	1.99
91472805--91473096	40	7.3	40	94	1	412	24	27	21	26	1.99
91473081--91473158	40	1.9	41	82	10	97	26	28	20	24	1.99
91486088--91486281	47	4.1	47	90	0	289	32	10	29	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91486117--91486188	22	3.1	22	64	24	58	33	13	29	23	1.93
91486162--91486237	23	3.2	25	62	24	63	28	13	34	23	1.92
91486251--91486435	48	3.8	48	88	5	291	36	6	26	30	1.82
91486252--91486435	98	1.9	96	91	4	298	36	6	26	30	1.82
91486613--91486750	37	3.7	37	95	0	240	25	18	31	25	1.97
91497706--91498133	40	10.7	40	91	0	676	21	27	20	30	1.98
91507987--91508024	20	1.9	19	85	15	51	36	13	23	26	1.91
91512723--91512763	21	2.0	21	95	0	73	43	9	2	43	1.50
91513378--91513417	21	2.0	21	90	5	64	25	0	25	50	1.50
91539424--91539602	24	7.4	24	94	1	313	27	20	20	30	1.98
91539424--91539602	73	2.5	73	95	1	315	27	20	20	30	1.98
91539652--91539718	20	3.3	20	91	0	116	31	19	13	35	1.90
91542536--91542592	30	1.9	30	85	7	80	57	14	14	14	1.65
91542527--91542600	15	5.0	15	77	11	64	59	14	13	12	1.61
91546063--91546163	50	2.0	50	92	0	166	27	24	20	26	1.99
91547746--91547815	35	2.0	35	100	0	140	11	37	14	37	1.82
91550069--91550170	53	1.9	53	93	2	170	40	12	26	19	1.88
91552647--91552725	26	3.1	26	65	26	69	60	2	18	17	1.47
91566749--91566850	40	2.6	40	95	1	179	24	27	22	25	2.00
91568727--91569128	200	2.0	200	99	0	795	38	22	8	31	1.84
91569272--91569441	93	1.8	93	94	2	306	28	29	20	21	1.98
91569263--91569438	46	3.8	46	78	14	200	30	29	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91580415--91580454	20	2.0	20	90	9	64	70	2	7	20	1.24
91581055--91581161	23	4.7	23	77	2	90	32	16	15	34	1.91
91583335--91583436	21	4.5	22	74	16	77	52	26	0	19	1.52
91583380--91583431	22	2.4	21	87	3	68	51	30	0	17	1.45
91583535--91583591	29	2.0	29	86	6	80	31	7	10	50	1.63
91583940--91583980	18	2.3	18	87	4	66	29	0	4	65	1.13
91584141--91584297	80	2.0	78	85	7	210	46	8	9	35	1.68
91595379--91595418	16	2.4	16	87	4	53	55	0	2	42	1.13
91598789--91598828	21	1.9	21	89	0	62	45	0	17	37	1.49
91599305--91599355	25	2.1	24	85	3	66	19	17	17	45	1.86
91599318--91599367	23	2.1	25	81	7	59	16	18	20	46	1.85
91600188--91600276	18	4.9	18	76	5	90	33	11	12	42	1.78
91600160--91600263	54	1.9	53	84	5	138	32	13	12	41	1.82
91604520--91604555	16	2.2	16	95	0	63	22	33	5	38	1.77
91606310--91606405	18	5.3	18	83	0	93	34	13	12	39	1.82
91606569--91606660	44	2.1	44	84	8	116	35	21	18	23	1.95
91607641--91607714	38	1.9	38	97	0	139	6	33	2	56	1.40
91607644--91607735	38	2.4	38	89	3	123	7	33	3	55	1.44
91615847--91615909	31	2.0	31	100	0	126	15	28	12	42	1.84
91616193--91616219	13	2.1	13	100	0	54	22	37	25	14	1.93
91618179--91618217	16	2.4	16	86	4	51	46	15	7	30	1.74
91625005--91625051	23	2.0	23	95	0	85	34	27	0	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91630206--91630327	43	2.9	41	72	11	120	27	15	24	32	1.95
91641014--91642420	704	2.0	704	93	0	2429	29	17	25	27	1.98
91642456--91642636	91	2.0	91	98	0	353	26	14	30	28	1.95
91644268--91644444	27	6.6	27	81	5	196	27	15	28	29	1.96
91644269--91644423	81	1.9	81	88	5	233	27	15	28	29	1.96
91644265--91644444	81	2.2	81	83	3	229	27	15	27	29	1.96
91647017--91647129	43	2.7	43	83	4	140	30	25	19	24	1.98
91652676--91652798	58	2.1	58	86	3	167	34	11	19	34	1.88
91652824--91652995	71	2.4	69	79	5	193	24	16	19	40	1.91
91652824--91653187	70	5.2	71	76	6	244	22	15	21	40	1.91
91652867--91653315	70	6.4	70	75	9	335	22	16	21	39	1.92
91652838--91653315	140	3.4	140	79	5	455	23	16	21	39	1.92
91653328--91653393	33	2.0	33	96	0	123	31	12	25	30	1.92
91653701--91653746	24	1.9	24	90	0	74	19	30	17	32	1.95
91656539--91656589	18	2.7	19	73	11	52	80	1	15	1	0.89
91658353--91658379	7	3.9	7	100	0	54	40	44	0	14	1.46
91659508--91659651	41	3.5	40	82	7	173	37	20	20	21	1.94
91659810--91659887	14	5.7	14	71	17	56	29	2	21	46	1.65
91661520--91661593	7	10.9	7	75	16	66	14	1	40	43	1.54
91661526--91661591	13	4.9	13	73	16	55	13	1	42	42	1.53
91661551--91661590	20	2.0	21	90	5	64	12	2	45	40	1.56
91662464--91662561	44	2.3	44	82	3	119	20	39	1	38	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91666191--91666240	23	2.2	23	96	0	91	36	16	16	32	1.90
91666363--91666849	241	2.0	241	97	0	911	34	17	14	33	1.91
91667291--91667418	9	13.6	9	76	9	121	47	19	1	31	1.59
91667291--91667414	39	3.3	36	82	9	140	48	19	1	30	1.58
91667304--91667416	57	2.0	57	87	0	163	46	21	1	30	1.61
91673264--91673366	42	2.4	42	83	4	127	26	16	22	34	1.95
91674241--91674667	234	1.8	234	92	0	728	22	19	26	31	1.98
91676214--91676276	26	2.4	26	86	0	99	9	23	34	31	1.87
91682087--91682144	30	1.9	30	89	0	89	32	10	25	31	1.89
91688753--91688809	30	1.9	30	88	0	87	31	8	26	33	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322