Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  319  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105725816--105725959
68
2.1
68
100
0
288
31
18
20
29
1.97
105726746--105727894
132
8.7
132
90
2
1756
29
15
25
28
1.96
105726747--105728049
44
29.6
44
74
4
570
29
15
25
29
1.96
105728085--105728416
44
7.6
44
71
11
243
30
20
22
26
1.99
105728019--105728418
132
3.0
132
95
1
723
29
21
23
26
1.99
105728381--105729085
82
8.6
83
90
2
739
31
24
20
23
1.98
105728386--105729029
286
2.2
286
98
1
1227
31
24
20
24
1.98
105732327--105732386
6
10.3
6
76
5
61
16
1
5
76
1.04
105732327--105732386
18
3.5
17
82
8
68
16
1
5
76
1.04
105734214--105734271
30
1.9
30
85
0
80
17
34
31
17
1.93
105735004--105735142
67
2.1
67
94
0
242
15
17
12
54
1.71
105736096--105736147
24
2.2
24
89
0
77
55
9
1
32
1.43
105736650--105736731
41
2.0
41
100
0
164
51
19
9
19
1.74
105737528--105737595
29
2.3
29
85
12
86
51
7
13
27
1.67
105737720--105737784
31
2.1
31
83
8
80
23
6
21
49
1.72
105739767--105739815
21
2.3
21
82
0
62
18
24
14
42
1.87
105739778--105739847
21
3.3
22
79
13
67
15
21
17
45
1.85
105746664--105746704
18
2.3
18
87
8
57
51
0
2
46
1.14
105746664--105746705
19
2.3
18
87
4
57
52
0
2
45
1.13
105750410--105750469
20
3.0
20
73
19
54
41
0
3
55
1.16
105751922--105751966
19
2.5
18
82
10
56
31
0
2
66
1.04
105752888--105752932
12
3.5
13
85
14
58
26
0
4
68
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105757643--105757808
83
2.0
83
97
0
314
34
18
19
26
1.95
105758702--105758742
21
2.0
21
90
0
64
29
21
29
19
1.98
105762477--105762525
11
4.5
11
77
10
55
46
0
2
51
1.12
105762470--105762518
22
2.3
21
82
3
62
48
0
2
48
1.12
105770939--105770978
19
2.1
19
90
0
62
72
7
2
17
1.19
105773169--105773264
47
2.0
47
97
0
183
20
33
14
31
1.93
105788457--105788512
3
18.7
3
96
0
94
32
3
0
64
1.11
105788810--105788845
15
2.4
15
95
0
63
38
0
5
55
1.23
105788817--105788862
24
2.0
25
83
12
62
32
4
2
60
1.28
105790195--105790244
24
2.1
24
100
0
100
38
12
4
46
1.60
105790358--105790461
28
3.8
27
75
13
79
28
4
8
57
1.49
105797771--105797834
32
2.0
32
96
0
119
25
29
18
26
1.98
105800309--105800366
26
2.2
26
93
0
98
34
5
24
36
1.78
105801990--105802126
27
5.1
26
85
7
175
17
23
23
35
1.95
105801990--105802144
54
2.9
53
89
2
222
18
23
21
35
1.96
105801997--105802144
27
5.5
27
80
16
148
18
24
21
35
1.96
105805588--105805727
70
2.0
70
95
0
253
30
15
14
40
1.86
105806351--105806502
37
3.9
37
81
13
173
26
21
15
36
1.94
105806419--105806621
46
4.3
46
88
7
289
28
21
14
35
1.92
105806462--105806641
52
3.6
52
85
9
264
27
22
13
35
1.93
105806419--105806641
98
2.3
98
93
0
374
27
22
14
35
1.93
105808654--105808683
14
2.1
14
93
0
51
16
10
6
66
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105808649--105809198
87
6.3
87
98
0
1039
29
14
18
38
1.90
105811940--105811984
9
5.0
9
91
0
63
26
8
0
64
1.23
105811934--105811984
3
17.0
3
79
0
57
29
7
0
62
1.23
105812073--105812126
21
2.6
21
81
0
72
31
5
7
55
1.51
105812740--105812843
28
3.8
27
73
13
70
27
4
8
58
1.48
105813600--105813664
32
2.0
32
96
0
121
32
6
23
38
1.79
105815223--105815275
26
2.0
26
85
7
72
37
22
15
24
1.92
105818337--105818397
29
2.1
30
81
9
72
29
6
9
54
1.59
105818798--105818836
19
2.1
19
90
0
60
30
0
7
61
1.24
105822949--105823030
26
3.2
26
98
0
155
36
25
7
30
1.83
105825248--105825288
20
1.9
20
85
14
55
21
4
2
70
1.18
105827213--105827270
26
2.2
26
100
0
116
32
3
25
37
1.73
105830731--105830766
4
9.0
4
87
0
54
50
0
0
50
1.00
105830731--105830766
6
6.0
6
93
0
54
50
0
0
50
1.00
105832366--105832407
7
6.0
7
89
8
50
9
11
0
78
0.96
105832368--105832417
22
2.2
22
85
3
64
8
10
0
82
0.86
105832370--105832411
15
2.9
15
89
3
59
7
11
0
80
0.88
105832373--105832417
7
6.3
7
89
5
54
6
11
0
82
0.84
105833064--105833104
10
4.3
10
84
9
50
34
4
0
60
1.18
105833064--105833104
19
2.2
19
86
8
57
34
4
0
60
1.18
105833037--105833105
9
7.3
9
71
12
50
33
2
0
63
1.09
105833037--105833105
20
3.6
20
74
12
65
33
2
0
63
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105834277--105834315
21
1.9
20
89
5
60
28
33
0
38
1.57
105834357--105834542
36
5.9
33
69
25
134
25
24
8
40
1.83
105834378--105834498
27
4.4
27
85
10
172
25
23
9
41
1.85
105834359--105834579
57
3.5
62
82
12
258
25
24
8
41
1.83
105834349--105834572
93
2.4
92
83
10
278
25
25
8
41
1.83
105834395--105834600
57
3.5
57
78
14
218
25
24
9
40
1.85
105834393--105834595
30
6.7
31
79
15
196
24
24
10
40
1.86
105834474--105834536
21
3.3
21
62
25
57
25
23
9
41
1.85
105834463--105834579
36
3.4
35
77
16
129
24
23
9
41
1.84
105838796--105838843
19
2.3
21
79
10
55
64
8
4
22
1.38
105839478--105839536
25
2.3
25
80
8
66
30
1
3
64
1.20
105839663--105839702
20
2.0
20
86
13
57
65
5
0
30
1.14
105843099--105843145
20
2.4
20
92
3
78
59
0
0
40
0.97
105843113--105843152
20
2.0
20
85
0
53
62
0
5
32
1.17
105843389--105843461
29
2.6
27
81
16
78
32
1
1
64
1.11
105848282--105848349
34
2.0
34
100
0
136
29
14
32
23
1.94
105850161--105850261
50
2.0
50
100
0
202
33
17
5
42
1.74
105852415--105852638
85
2.6
85
100
0
448
30
12
16
39
1.87
105853775--105853979
95
2.2
95
100
0
410
37
9
22
29
1.87
105854464--105854513
17
2.7
20
78
18
70
10
0
44
46
1.37
105857429--105857469
21
2.0
21
90
0
64
29
21
29
19
1.98
105860828--105860878
24
2.1
24
82
7
59
72
0
3
23
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105860868--105860920
19
2.7
18
75
16
52
67
0
7
24
1.16
105860875--105860918
20
2.2
20
88
12
63
65
0
6
27
1.17
105860828--105860983
9
17.6
9
67
19
71
66
0
3
28
1.13
105860918--105860984
10
6.8
10
76
10
57
65
1
1
31
1.10
105860927--105860992
19
3.4
19
74
12
62
65
1
1
31
1.11
105866679--105866719
21
2.0
21
90
0
64
19
29
21
29
1.98
105875044--105875106
29
2.2
29
82
0
81
34
19
23
22
1.96
105875052--105875120
29
2.4
29
80
0
84
28
18
30
21
1.97
105877389--105877467
39
2.0
40
95
2
142
24
15
10
50
1.74
105881453--105881498
18
2.8
18
84
15
64
0
30
41
28
1.56
105883271--105883467
101
2.0
101
98
0
385
27
13
24
35
1.92
105894374--105894426
25
2.1
26
82
3
63
32
1
3
62
1.24
105899175--105899293
58
2.1
58
93
0
202
44
21
16
17
1.87
105905332--105905386
20
2.7
21
80
11
69
60
7
1
30
1.35
105905423--105905490
25
2.8
24
80
10
68
69
2
1
26
1.12
105905429--105905489
16
3.7
16
80
10
61
67
3
1
27
1.16
105905492--105905535
21
2.2
20
87
4
61
63
0
6
29
1.20
105905554--105905599
21
2.2
22
85
11
62
69
2
2
26
1.11
105929520--105929593
6
12.3
6
100
0
148
32
0
17
50
1.47
105934142--105934189
24
2.0
24
92
8
80
27
14
29
29
1.95
105936088--105936142
4
13.8
4
88
0
56
0
10
49
40
1.38
105936088--105936142
10
5.3
10
85
8
74
0
10
49
40
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105940189--105940233
9
5.1
9
81
5
56
48
0
2
48
1.13
105941622--105941725
51
2.0
51
94
0
181
18
17
20
44
1.87
105944172--105944801
236
2.7
236
92
0
1010
31
17
16
34
1.92
105946345--105946380
18
2.0
18
89
10
56
63
0
0
36
0.94
105950971--105951041
10
6.2
12
71
20
55
61
0
1
36
1.05
105952522--105952635
51
2.2
52
83
7
135
27
29
15
27
1.96
105952563--105952701
66
2.1
66
86
2
190
28
28
14
28
1.95
105954636--105954703
35
1.9
35
85
5
93
60
0
4
35
1.17
105954696--105954734
18
2.0
20
85
9
55
56
0
0
43
0.99
105959096--105959725
236
2.7
236
90
1
987
30
18
16
34
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322