genome.fa.s2.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  95  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30827182--30827225	18	2.4	19	80	3	54	40	2	18	38	1.63
30828691--30828814	50	2.5	51	89	4	189	26	23	16	33	1.95
30833203--30833329	42	3.0	42	84	6	152	31	25	12	29	1.93
30833288--30833406	47	2.6	47	86	1	159	28	27	15	27	1.97
30833429--30833546	31	3.8	31	84	4	157	25	27	18	28	1.98
30833522--30833698	50	3.5	50	93	2	284	26	23	15	35	1.94
30837242--30837289	20	2.4	20	100	0	96	18	35	29	16	1.93
30839499--30839639	64	2.2	64	87	5	196	39	14	9	35	1.80
30842303--30842373	33	2.1	34	84	2	90	26	28	21	23	1.99
30844119--30844183	28	2.3	28	92	5	105	29	7	29	33	1.85
30845159--30845191	12	2.6	13	85	9	50	45	0	45	9	1.35
30851626--30851740	55	2.1	56	82	8	137	34	22	24	18	1.96
30851651--30851740	27	3.2	27	81	7	101	32	24	24	18	1.97
30851846--30851910	28	2.3	28	92	5	105	29	7	29	33	1.85
30852978--30853010	12	2.6	13	85	9	50	45	0	45	9	1.35
30873876--30873933	26	2.2	27	81	3	73	15	22	20	41	1.90
30881203--30881530	47	6.9	47	95	0	548	32	8	30	29	1.86
30899390--30899441	25	2.1	25	96	0	95	50	9	11	28	1.70
30900267--30900349	6	13.8	6	78	14	91	53	14	13	19	1.73
30900267--30900345	30	2.6	30	90	4	115	53	15	12	18	1.73
30900246--30900352	30	3.4	30	73	16	99	51	14	14	19	1.76
30911323--30911374	27	1.9	27	96	0	95	30	21	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30911392--30911799	27	15.1	27	85	4	493	39	9	23	27	1.85
30913442--30913506	27	2.4	27	82	5	69	35	26	23	15	1.94
30912980--30913849	352	2.5	353	93	3	1511	33	23	22	20	1.97
30913807--30913889	27	3.1	26	87	5	112	37	21	21	19	1.94
30914088--30914283	27	7.3	27	79	0	212	26	17	18	37	1.93
30914087--30914276	54	3.5	54	89	1	283	25	18	18	37	1.93
30914288--30914703	27	15.4	27	82	5	446	40	9	22	27	1.84
30914293--30914703	81	5.1	81	83	2	506	40	9	23	27	1.84
30917043--30917100	25	2.2	26	81	6	64	20	12	34	32	1.90
30919409--30919438	15	2.1	15	93	6	53	26	6	26	40	1.81
30923244--30923376	42	3.1	43	67	12	112	31	16	24	27	1.96
30925397--30925813	224	1.9	224	94	0	744	37	7	24	29	1.84
30929354--30929414	30	2.0	30	83	0	77	31	22	8	37	1.84
30932975--30933012	17	2.4	17	91	8	62	55	0	13	31	1.38
30947341--30947558	94	2.4	90	83	6	251	24	17	31	26	1.97
30947341--30947558	46	4.8	45	80	8	217	24	17	31	26	1.97
30947341--30947595	90	2.8	91	79	11	211	24	18	31	26	1.97
30949389--30949448	21	2.8	22	77	7	61	60	3	11	25	1.47
30955506--30955569	30	2.2	29	94	2	110	25	18	23	32	1.97
30959895--30959925	12	2.6	12	100	0	62	51	29	0	19	1.47
30960122--30960146	11	2.3	11	100	0	50	36	0	8	56	1.29
30963713--30963983	27	10.2	27	84	4	318	29	22	7	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30964219--30964270	27	2.0	26	84	3	68	17	26	21	34	1.95
30964487--30964617	6	21.3	6	68	16	72	19	19	12	48	1.81
30964509--30964596	37	2.4	37	88	0	131	19	21	13	45	1.84
30964521--30964591	19	3.8	19	78	10	83	18	22	14	45	1.85
30964487--30964596	31	3.4	31	75	14	103	20	20	12	47	1.82
30964487--30964608	37	3.4	36	76	13	128	19	19	12	48	1.80
30964804--30964856	27	2.0	27	88	3	81	18	26	22	32	1.97
30965852--30965913	30	2.1	30	93	0	106	32	3	37	27	1.73
30967066--30967392	27	12.2	27	83	3	338	28	22	7	41	1.82
30967703--30967762	27	2.3	26	82	2	66	23	21	20	35	1.96
30967881--30967977	6	15.8	6	73	12	81	17	18	14	49	1.80
30967875--30967977	43	2.4	43	85	0	134	18	19	13	48	1.81
30971657--30971695	19	2.1	19	95	0	69	20	17	23	38	1.93
30989052--30989081	13	2.3	13	100	0	60	50	13	13	23	1.77
30992716--30992800	39	2.2	40	89	2	127	24	20	30	24	1.98
31000180--31000404	79	2.8	79	79	10	260	24	22	27	25	2.00
31000180--31000404	40	5.7	40	83	7	262	24	22	27	25	2.00
31023758--31023844	20	4.3	20	86	2	122	42	9	17	31	1.80
31023894--31024029	26	5.3	26	87	3	181	27	19	22	29	1.98
31024161--31024252	42	2.2	42	88	0	130	29	14	21	34	1.93
31024276--31024385	31	3.5	31	91	0	166	30	15	25	28	1.96
31026979--31027089	27	4.1	27	82	5	109	22	24	17	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31026978--31027088	54	2.1	54	83	6	136	22	24	18	35	1.96
31033422--31033589	43	4.0	43	74	10	148	29	26	19	25	1.98
31039155--31039448	38	8.1	37	82	10	292	17	21	24	36	1.94
31039320--31039437	62	1.9	62	92	1	193	17	24	26	30	1.97
31039378--31039481	38	2.7	38	86	3	136	19	20	25	34	1.96
31039301--31039711	212	2.0	202	91	6	675	16	19	27	36	1.93
31039500--31039693	38	5.1	38	84	3	221	15	20	26	37	1.93
31039516--31039658	75	1.9	76	91	1	234	15	20	25	37	1.92
31053751--31053913	43	3.8	43	77	7	145	27	14	23	33	1.94
31055742--31055984	68	3.6	68	78	1	290	32	18	24	24	1.97
31055742--31055991	135	1.9	135	88	0	383	32	18	24	24	1.97
31059373--31059420	22	2.2	22	92	3	80	52	14	10	22	1.72
31060944--31061142	6	32.8	6	77	15	205	48	14	17	19	1.81
31060944--31061142	97	2.1	97	94	3	348	48	14	17	19	1.81
31061260--31061329	26	2.7	25	84	8	86	37	18	24	20	1.94
31061260--31061332	27	2.8	26	82	12	87	36	19	24	19	1.94
31061284--31061340	27	2.1	27	83	6	71	36	26	21	15	1.93
31061497--31061555	22	2.7	22	81	0	64	32	22	25	20	1.98
31061643--31061725	27	3.1	26	87	5	112	37	21	21	19	1.94
31061924--31062119	27	7.3	27	87	0	239	26	19	18	35	1.95
31062124--31062612	27	18.1	27	89	2	732	39	9	23	27	1.86
31064632--31064733	6	16.8	6	77	17	104	49	13	17	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31064611--31064733	30	4.1	29	83	9	140	48	13	17	19	1.80
31064851--31064920	26	2.7	25	84	8	86	37	18	24	20	1.94
31064851--31064923	27	2.8	26	82	12	87	36	19	24	19	1.94
31064875--31064931	27	2.1	27	83	6	71	36	26	21	15	1.93
31065088--31065146	22	2.7	22	81	0	64	32	22	25	20	1.98
31065234--31065316	27	3.1	26	87	5	112	37	21	21	19	1.94
31065515--31065683	27	6.3	27	85	0	203	26	19	18	35	1.95
31065688--31065771	27	3.1	27	74	6	89	44	9	16	29	1.80
31065726--31065813	42	2.1	42	82	0	104	40	9	18	31	1.81
31065783--31066051	27	10.2	27	79	8	313	40	8	23	27	1.83
31065699--31065839	69	2.0	69	83	0	174	41	8	18	31	1.80
31065863--31066082	81	2.7	81	85	2	264	38	8	25	28	1.85
31066925--31067020	27	3.6	27	90	2	131	23	7	21	46	1.76
31066925--31067062	27	5.1	27	80	6	111	26	8	21	42	1.82
31066925--31067035	54	2.1	54	81	6	127	26	8	21	44	1.80
31067001--31067067	26	2.5	27	85	4	91	29	8	22	38	1.85
31067059--31067132	27	2.7	27	89	0	112	28	18	16	36	1.93
31087320--31087356	13	2.8	13	91	4	56	35	16	5	43	1.71
31089722--31089754	17	1.9	17	93	0	57	57	9	12	21	1.62
31099067--31099127	30	2.0	30	83	0	77	31	22	8	37	1.84
31101520--31101560	20	2.0	20	100	0	82	34	19	24	21	1.97
31110927--31111391	27	17.3	27	81	5	469	31	8	21	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31110927--31111400	81	5.9	81	81	5	521	31	8	20	39	1.83
31114897--31114974	27	2.9	27	86	1	102	25	23	23	28	1.99
31117626--31117711	27	3.2	27	81	3	102	24	22	23	30	1.99
31125901--31125931	15	2.1	15	93	0	53	19	0	25	54	1.44
31126480--31126569	45	2.0	45	91	0	144	22	13	27	36	1.91
31127413--31127820	27	15.1	27	81	5	391	41	7	20	30	1.80
31127413--31127820	54	7.6	54	86	1	473	41	7	20	30	1.80
31127413--31127820	81	5.0	81	84	2	489	41	7	20	30	1.80
31127813--31128021	27	7.7	27	81	8	160	29	8	22	40	1.82
31127812--31128021	54	3.9	52	78	9	190	29	8	21	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322