genome.fa.s2.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  117  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38106075--38106128	23	2.2	25	84	12	69	40	7	12	38	1.72
38109232--38109342	47	2.4	47	83	6	145	26	16	22	35	1.95
38113194--38113296	51	2.0	51	100	0	206	29	3	13	53	1.58
38113264--38113325	30	2.1	30	100	0	124	29	0	16	54	1.42
38114952--38115120	47	3.6	47	78	10	211	20	19	29	30	1.97
38114916--38115174	46	5.6	46	74	8	238	20	20	28	29	1.98
38114916--38115167	93	2.7	93	94	0	432	21	20	28	29	1.98
38116536--38116570	14	2.5	14	100	0	70	5	0	5	88	0.63
38130614--38130707	45	2.1	45	97	0	179	36	11	24	27	1.90
38133179--38133279	43	2.3	45	81	10	111	29	16	25	27	1.97
38133092--38133804	176	4.2	175	80	8	781	31	17	24	26	1.97
38142354--38142415	31	1.9	33	87	9	92	51	3	8	37	1.48
38142427--38142458	14	2.1	16	88	11	50	56	3	6	34	1.40
38147566--38147779	106	2.0	106	95	0	383	21	21	15	42	1.89
38149032--38149067	15	2.3	16	90	4	56	80	0	8	11	0.90
38150683--38150722	19	2.1	19	86	9	55	15	7	5	72	1.24
38152569--38152691	48	2.6	48	82	7	137	30	17	26	24	1.97
38154959--38155010	27	1.9	27	92	0	86	44	5	23	26	1.76
38159983--38160102	46	2.6	45	82	5	125	32	20	25	21	1.97
38160167--38160290	49	2.5	49	84	3	151	28	22	28	20	1.99
38167331--38167363	13	2.5	13	100	0	66	15	15	15	54	1.71
38168974--38169064	46	2.0	45	87	6	130	23	24	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38168974--38169075	23	4.4	22	83	13	116	23	25	17	33	1.96
38175733--38175955	47	4.7	48	80	7	249	21	29	20	28	1.98
38179005--38179046	19	2.3	19	84	12	52	28	0	4	66	1.12
38179153--38179187	15	2.3	15	90	9	54	20	0	5	74	1.02
38179170--38179219	19	2.5	20	81	18	77	30	0	4	66	1.10
38179394--38179440	20	2.3	20	92	7	78	70	2	0	27	0.99
38184201--38184611	204	2.0	204	100	0	822	38	19	12	28	1.89
38191521--38191545	13	1.9	13	100	0	50	36	0	8	56	1.29
38192647--38192828	90	2.0	90	96	2	339	19	22	31	25	1.98
38193220--38193453	117	2.0	117	100	0	468	34	18	11	35	1.88
38200581--38200843	40	6.6	39	86	4	278	25	27	21	25	1.99
38200581--38200843	120	2.2	119	82	4	307	25	27	21	25	1.99
38200775--38200852	40	1.9	41	82	10	97	26	28	20	24	1.99
38208527--38208789	40	6.6	39	86	4	278	25	27	21	25	1.99
38208527--38208789	120	2.2	119	82	4	307	25	27	21	25	1.99
38208721--38208798	40	1.9	41	82	10	97	26	28	20	24	1.99
38217966--38218246	140	2.0	140	100	0	562	45	23	4	25	1.73
38218025--38218241	68	3.1	68	64	23	180	47	23	5	23	1.71
38218786--38218910	23	5.4	23	74	10	112	33	18	22	25	1.96
38218851--38218942	24	3.8	24	77	12	84	35	17	22	23	1.95
38221907--38221936	15	2.0	15	100	0	60	26	33	20	20	1.97
38222374--38222494	47	2.6	47	90	0	197	26	28	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38228026--38228137	47	2.4	47	86	0	152	29	28	16	25	1.97
38236686--38236722	19	1.9	19	94	0	65	32	18	0	48	1.49
38243218--38243259	21	2.0	21	95	0	75	28	33	16	21	1.95
38252419--38252649	55	4.4	53	78	10	242	33	18	25	22	1.97
38252423--38252623	108	1.8	110	88	4	309	31	18	26	22	1.97
38255323--38255369	22	2.1	22	84	7	60	38	31	21	8	1.83
38255567--38255625	22	2.7	23	79	12	70	33	22	23	20	1.97
38255771--38255970	41	4.9	41	89	0	292	26	29	22	22	1.99
38256211--38256634	27	15.7	27	80	4	327	29	9	20	40	1.84
38256623--38256680	27	2.1	27	90	0	89	25	18	17	37	1.93
38256511--38256661	81	1.9	81	81	2	187	27	9	21	40	1.85
38256623--38256696	27	2.7	27	85	0	76	27	20	17	35	1.95
38258146--38258192	17	2.8	17	81	9	51	36	12	6	44	1.68
38258555--38258620	28	2.4	28	100	0	132	30	27	24	18	1.98
38259207--38259329	41	3.0	41	84	0	174	27	28	21	22	1.99
38259590--38259882	27	10.9	27	72	12	113	31	9	19	39	1.84
38259625--38259874	54	4.6	53	75	6	173	30	10	19	39	1.85
38259672--38259874	54	3.8	53	76	10	180	31	10	20	37	1.87
38259864--38259928	27	2.4	27	78	0	85	27	20	16	35	1.94
38259864--38259944	27	3.0	26	76	7	81	29	19	17	33	1.95
38262613--38262658	22	2.1	22	87	0	65	45	26	17	10	1.81
38263024--38263189	41	4.0	41	87	0	242	27	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38263449--38263761	27	11.6	27	72	9	156	33	9	17	39	1.81
38263435--38263743	54	5.7	54	74	7	198	33	8	17	40	1.80
38263753--38263820	27	2.5	27	90	0	109	27	19	20	32	1.97
38263773--38263832	27	2.2	27	87	0	84	28	23	20	28	1.99
38270362--38270530	55	3.1	53	79	8	196	35	17	25	21	1.95
38280165--38280388	43	5.4	43	81	10	279	32	18	19	29	1.96
38280224--38280371	76	1.9	76	90	0	233	33	18	16	31	1.93
38281244--38281325	22	3.6	22	71	9	74	30	8	21	39	1.84
38281248--38281340	47	2.0	47	97	0	177	31	7	20	40	1.80
38282672--38282847	46	3.8	46	79	12	207	20	20	29	29	1.98
38282669--38282839	93	1.8	93	93	0	297	20	21	29	28	1.98
38285448--38285665	46	4.7	46	79	5	183	26	19	31	22	1.98
38291105--38291212	23	4.7	23	74	12	96	25	22	16	36	1.94
38291557--38291650	31	3.0	31	90	0	161	38	17	13	30	1.88
38312961--38312995	15	2.3	15	95	0	61	37	25	11	25	1.90
38315230--38315452	39	5.7	40	86	7	273	25	22	27	24	2.00
38315230--38315452	79	2.8	81	85	8	282	25	22	27	24	2.00
38315230--38315485	79	3.3	79	82	9	224	26	21	27	24	1.99
38323218--38323402	79	2.3	81	84	7	236	24	22	27	25	2.00
38323219--38323402	40	4.6	40	83	9	216	24	22	27	25	2.00
38323271--38323435	79	2.1	79	84	6	210	26	21	27	25	1.99
38332621--38332770	41	3.6	41	74	10	144	28	27	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38335151--38335370	48	4.6	49	80	10	233	28	18	28	25	1.98
38346786--38346845	29	2.1	28	84	3	75	33	25	0	41	1.55
38353006--38353034	12	2.3	13	94	5	51	20	6	6	65	1.40
38357676--38357813	51	2.8	50	82	5	172	27	19	24	28	1.99
38380974--38381126	43	3.6	43	87	3	220	29	28	18	23	1.98
38382238--38382270	15	2.2	15	89	10	50	54	18	0	27	1.44
38390090--38390258	27	6.2	27	83	4	196	27	15	26	30	1.96
38390091--38390246	82	1.9	81	88	3	233	26	15	28	29	1.96
38397590--38397892	40	7.6	40	90	2	387	24	20	28	27	1.99
38403151--38403418	46	5.8	46	87	7	400	20	20	29	29	1.98
38403148--38403411	139	1.9	139	97	0	501	21	20	29	28	1.98
38405218--38405299	26	3.2	26	85	3	121	35	21	8	34	1.84
38416150--38416208	30	2.0	30	83	6	75	38	3	25	32	1.72
38416543--38416675	43	2.9	44	77	13	133	24	18	27	29	1.98
38428448--38428529	38	2.2	38	86	0	110	23	25	25	25	2.00
38428475--38428549	38	2.0	38	86	5	107	24	24	25	26	2.00
38428548--38428672	43	2.9	43	92	0	205	13	25	32	28	1.94
38432049--38432090	18	2.3	18	100	0	84	16	23	38	21	1.93
38441392--38441612	46	4.8	44	73	13	171	26	28	18	26	1.98
38442480--38442542	31	2.0	31	96	0	117	31	23	6	38	1.80
38447331--38447379	25	2.0	25	83	0	62	38	0	26	34	1.57
38449203--38449297	47	2.0	47	97	0	181	28	10	23	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38449415--38449525	39	2.8	39	86	1	141	33	5	18	42	1.74
38455203--38455380	27	6.6	27	84	3	205	29	28	15	26	1.96
38455224--38455379	82	1.9	81	88	3	233	29	28	15	26	1.96
38465686--38465711	6	4.3	6	100	0	52	50	0	0	50	1.00
38469011--38469058	18	2.6	18	86	3	60	33	4	8	54	1.50
38469025--38469063	18	2.2	18	95	0	69	28	2	10	58	1.44
38470678--38470917	43	5.7	43	84	7	226	33	25	17	23	1.96
38470678--38470786	41	2.6	43	85	10	154	33	25	20	20	1.96
38470764--38470920	43	3.7	43	87	3	228	33	26	16	23	1.96
38470764--38470954	85	2.2	86	83	4	226	34	24	16	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322