genome.fa.s2.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  91  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29574738--29574921	27	6.8	27	86	2	226	28	25	8	37	1.85
29574972--29575071	27	3.7	27	89	0	155	41	23	6	30	1.78
29574972--29575095	54	2.3	54	84	0	158	41	22	6	29	1.78
29574972--29575095	27	4.6	27	86	2	115	41	22	6	29	1.78
29575107--29575158	27	1.9	27	88	7	79	38	11	13	36	1.81
29575212--29575303	27	3.4	27	86	3	114	33	18	26	21	1.96
29576545--29576601	9	5.9	9	73	15	51	35	8	21	35	1.84
29576543--29576613	20	3.5	20	94	0	124	35	11	21	32	1.89
29576554--29576608	11	5.4	11	70	16	55	36	12	20	30	1.90
29576660--29576876	23	9.1	23	86	5	290	28	20	21	29	1.98
29577088--29577146	31	1.9	31	92	0	100	32	16	25	25	1.97
29584238--29584282	15	2.9	15	81	12	54	13	13	20	53	1.72
29596978--29597090	23	4.8	23	76	13	97	20	22	20	37	1.95
29597006--29597092	23	3.7	23	81	9	106	20	24	20	34	1.97
29596942--29597083	45	3.0	45	77	12	128	22	21	21	35	1.96
29599705--29599734	14	2.1	14	93	0	51	50	10	0	40	1.36
29600183--29600448	28	9.5	28	95	0	453	27	11	26	34	1.91
29601435--29601473	19	2.1	19	85	0	51	35	12	5	46	1.65
29602562--29602627	28	2.3	28	84	10	80	33	24	19	22	1.97
29602562--29602845	29	9.8	28	67	10	88	40	21	13	24	1.90
29602621--29602711	29	3.1	29	74	0	92	41	24	10	23	1.86
29602615--29602844	58	4.0	57	78	3	208	42	20	13	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29602739--29602883	29	5.0	29	73	11	102	39	21	15	24	1.91
29602594--29602881	58	5.0	58	77	4	190	40	21	13	25	1.89
29602771--29602923	29	5.3	29	72	12	100	37	19	15	27	1.92
29607881--29608026	40	3.7	40	78	5	161	25	26	22	25	2.00
29609719--29609903	48	3.8	48	90	5	309	30	26	7	35	1.84
29609719--29609902	98	1.9	98	93	4	320	30	26	7	35	1.84
29609873--29610066	47	4.1	47	90	0	289	26	29	10	32	1.90
29609966--29610037	22	3.1	22	64	24	58	23	29	13	33	1.93
29609826--29610066	94	2.6	94	84	4	290	27	29	9	33	1.89
29613329--29613395	25	2.7	25	84	9	91	25	16	25	32	1.96
29618418--29618465	25	1.9	25	86	0	69	31	22	16	29	1.96
29618502--29618562	20	3.0	20	92	0	104	34	11	21	32	1.89
29618618--29618720	24	4.3	24	92	0	161	33	18	22	25	1.96
29618618--29618737	24	5.0	24	88	3	125	31	19	22	26	1.97
29621422--29621474	23	2.4	22	76	20	56	9	18	1	69	1.25
29626901--29627274	50	7.4	50	77	2	345	27	17	25	29	1.97
29626854--29627289	101	4.3	101	75	4	351	27	17	25	30	1.97
29626900--29627279	151	2.5	151	85	2	532	26	17	26	30	1.97
29627854--29628179	179	1.8	179	87	2	485	39	8	19	32	1.82
29631968--29632146	46	3.9	46	79	8	184	29	29	20	21	1.98
29632019--29632162	46	3.1	45	73	15	132	29	28	19	22	1.98
29644597--29644639	22	1.9	23	90	4	70	20	6	53	18	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29661346--29661515	46	3.7	45	77	10	191	27	27	21	22	1.99
29661349--29661519	93	1.8	93	93	0	297	27	28	21	22	1.99
29661346--29661535	46	4.1	45	73	16	147	27	27	21	23	1.99
29664106--29664262	43	3.7	42	81	5	147	23	18	26	31	1.97
29686004--29686122	43	2.8	42	83	5	150	29	24	16	29	1.97
29686168--29686213	16	2.9	16	90	0	74	36	6	30	26	1.82
29691423--29691568	27	5.4	27	81	4	161	39	19	14	26	1.90
29691423--29691568	54	2.7	54	89	1	204	39	19	14	26	1.90
29707302--29707416	27	4.3	26	79	6	113	45	18	7	28	1.77
29707302--29707453	54	2.8	54	81	5	148	44	19	7	27	1.78
29707329--29707453	27	4.6	27	79	5	110	44	19	8	28	1.78
29707448--29707530	27	3.1	27	81	11	100	36	18	19	26	1.94
29707462--29707551	27	3.4	26	81	7	101	35	18	20	25	1.95
29713799--29714023	40	5.6	40	83	1	263	23	27	23	25	2.00
29713763--29714023	80	3.3	80	82	3	294	24	26	23	25	2.00
29713763--29714023	120	2.2	120	82	6	307	24	26	23	25	2.00
29719418--29719576	43	3.7	44	79	9	157	23	18	26	30	1.98
29719757--29719794	19	2.0	19	85	10	51	44	0	18	36	1.50
29728515--29728723	41	5.2	40	81	3	170	26	25	22	24	2.00
29728538--29728723	41	4.6	41	83	3	216	25	24	23	25	2.00
29732851--29733096	125	2.0	125	86	1	350	28	27	15	28	1.96
29733006--29733194	98	1.9	98	86	2	272	28	28	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29733401--29733617	109	2.0	109	95	0	389	39	18	20	20	1.92
29742471--29742619	74	2.0	74	100	0	298	47	22	4	25	1.69
29749315--29749413	42	2.3	42	79	5	110	31	20	20	28	1.97
29751983--29752101	43	2.8	42	83	5	150	29	24	16	29	1.97
29752147--29752192	16	2.9	16	90	0	74	36	6	30	26	1.82
29757098--29757143	18	2.6	18	89	0	65	45	13	19	21	1.84
29757496--29757653	27	5.9	27	85	0	201	38	19	15	25	1.92
29757496--29757653	54	2.9	54	87	0	228	38	19	15	25	1.92
29758320--29758359	17	2.3	17	91	4	62	30	12	7	50	1.68
29764391--29764477	27	3.3	26	80	7	95	44	17	9	28	1.79
29764365--29764515	53	2.8	53	81	6	146	45	19	8	26	1.79
29764402--29764515	27	4.3	26	75	12	97	44	20	8	26	1.80
29764387--29764515	53	2.4	54	82	6	147	43	19	8	28	1.80
29764510--29764569	27	2.2	26	80	13	68	35	18	20	26	1.95
29764524--29764607	27	3.1	27	84	0	87	34	17	20	27	1.95
29765045--29765115	33	2.2	33	84	0	88	26	16	22	33	1.96
29770078--29770544	232	2.0	232	97	0	889	35	11	22	30	1.90
29770872--29771043	47	3.7	47	96	0	301	33	14	26	25	1.94
29771014--29771341	48	6.8	48	91	3	525	35	7	26	30	1.84
29771014--29771341	146	2.3	144	91	2	525	35	7	26	30	1.84
29771491--29771595	37	2.8	38	90	5	162	25	18	31	24	1.97
29772865--29773293	40	10.7	40	88	0	606	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29773472--29773522	25	2.0	25	85	7	68	31	7	31	29	1.86
29777355--29777762	47	8.7	47	98	0	762	34	12	25	27	1.92
29777731--29777964	48	4.8	48	89	6	364	35	7	27	30	1.84
29777355--29777816	141	3.3	136	93	3	606	34	11	26	27	1.91
29777731--29777961	98	2.4	98	88	7	362	35	7	27	30	1.84
29778111--29778219	37	2.9	37	93	0	182	23	19	31	25	1.98
29779293--29779497	27	7.6	27	74	7	148	40	20	13	25	1.89
29779281--29779497	54	4.1	53	75	10	163	39	21	13	25	1.90
29780341--29780416	38	2.0	38	94	0	134	31	13	23	31	1.93
29781604--29781748	40	3.6	40	81	4	166	26	24	25	23	2.00
29785358--29785401	22	2.0	22	82	8	54	31	11	13	43	1.80
29793933--29794022	46	2.0	46	91	4	146	27	22	18	31	1.97
29798048--29798221	46	3.8	44	78	9	179	28	28	20	22	1.99
29798056--29798225	92	1.8	93	91	1	279	27	28	21	22	1.99
29802608--29802647	13	3.1	13	92	0	62	15	27	40	17	1.89
29802871--29802906	18	1.9	18	88	5	54	2	63	0	33	1.08
29806972--29807024	21	2.5	21	93	0	88	33	7	28	30	1.85
29807296--29807333	14	2.9	13	84	11	51	47	0	2	50	1.15
29809507--29809553	21	2.2	21	85	7	60	25	27	14	31	1.95
29811625--29811763	37	3.8	37	95	1	244	24	31	19	24	1.98
29811625--29811763	73	1.9	74	93	1	244	24	31	19	24	1.98
29811904--29812424	48	10.9	48	94	0	898	31	27	6	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29815098--29815183	9	9.6	9	80	0	91	45	19	8	26	1.78
29815203--29815243	6	6.5	6	83	10	55	19	0	2	78	0.87
29821695--29821901	47	4.4	47	75	7	179	29	21	26	22	1.99
29821695--29821913	94	2.3	94	82	4	255	30	21	25	21	1.99
29829307--29829942	94	6.8	94	73	15	493	29	20	27	22	1.99
29829307--29830036	185	3.9	184	74	13	516	29	20	27	22	1.99
29829586--29830174	232	2.5	231	84	5	616	29	20	27	22	1.99
29829307--29829939	279	2.3	279	99	0	1241	29	20	27	22	1.99
29829304--29830174	47	18.7	47	69	12	354	29	20	27	22	1.99
29835880--29835904	13	1.9	13	100	0	50	32	0	4	64	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322