Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  168  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54897600--54897648
20
2.5
19
87
9
64
24
2
2
71
1.07
54900119--54900211
24
3.9
24
71
2
80
21
17
18
43
1.89
54900176--54900232
23
2.4
23
85
2
69
21
17
19
42
1.90
54900367--54900407
20
2.0
20
95
0
73
34
4
19
41
1.73
54904979--54905007
5
5.8
5
100
0
58
17
0
0
82
0.66
54918311--54918378
9
7.6
9
83
0
82
45
19
7
27
1.76
54918399--54918439
6
6.5
6
83
10
55
17
0
4
78
0.93
54918463--54918499
18
2.1
18
94
0
65
13
2
45
37
1.58
54937827--54937851
13
1.9
13
100
0
50
32
12
24
32
1.91
54959704--54959728
13
1.9
13
100
0
50
36
16
0
48
1.46
54975859--54975890
13
2.3
15
89
10
50
37
9
34
18
1.83
54975884--54976050
44
3.8
44
99
0
325
40
19
11
28
1.86
54986026--54986155
55
2.4
55
81
2
145
16
25
30
27
1.96
54986384--54986483
52
1.9
53
91
2
166
19
18
21
42
1.90
54992278--54992342
22
3.0
22
84
11
80
24
21
18
35
1.96
54992234--54992347
22
5.0
22
71
14
72
28
20
17
34
1.95
54992511--54992576
20
3.3
20
86
0
87
36
4
21
37
1.74
54992522--54992612
40
2.3
40
82
3
112
37
5
17
39
1.73
54992520--54992663
20
7.2
20
74
7
89
38
6
17
38
1.75
55000652--55000692
16
2.6
16
85
11
50
39
7
29
24
1.82
55013837--55014148
72
4.3
72
86
2
421
54
15
6
23
1.63
55013866--55014145
145
1.9
145
88
2
420
55
16
5
22
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55014576--55014623
18
2.7
18
96
0
87
39
12
12
35
1.81
55021034--55021115
39
2.1
39
93
4
139
26
31
21
19
1.97
55028172--55028417
3
82.0
3
100
0
492
33
0
0
66
0.92
55032132--55032169
19
2.0
19
100
0
76
26
31
10
31
1.90
55038625--55038699
36
2.1
36
100
0
150
25
16
34
24
1.95
55040877--55040989
44
2.5
45
85
1
147
28
17
23
30
1.97
55040674--55041095
190
2.2
190
85
2
553
33
17
19
29
1.94
55042994--55043018
3
8.3
3
100
0
50
32
0
0
68
0.90
55043282--55043324
3
14.3
3
100
0
86
32
0
0
67
0.91
55045375--55045450
18
3.9
18
80
11
71
67
2
1
28
1.12
55045390--55045454
27
2.3
27
84
10
78
66
1
0
32
1.01
55045391--55045460
9
7.4
9
79
11
52
65
1
1
31
1.10
55045619--55045680
11
6.0
10
72
20
56
30
3
1
64
1.19
55045665--55045727
25
2.5
26
76
7
67
34
7
1
55
1.39
55046000--55046057
21
2.9
21
77
10
59
32
1
1
63
1.14
55053374--55053420
25
2.0
25
83
8
62
53
4
14
27
1.60
55054304--55054369
32
2.1
32
88
8
100
45
15
7
31
1.74
55064850--55064974
60
2.1
58
85
7
162
52
3
0
44
1.17
55065007--55065059
25
2.1
25
89
0
79
41
1
1
54
1.22
55064979--55065073
33
2.8
32
81
17
97
41
2
2
54
1.24
55066574--55066748
75
2.4
74
80
9
187
41
6
9
42
1.63
55067218--55067259
20
2.2
19
87
8
59
26
4
14
54
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55069022--55069100
41
1.9
41
84
5
106
12
21
32
32
1.91
55069294--55069369
35
2.2
35
82
0
89
27
9
18
44
1.80
55077143--55077218
35
2.2
35
85
0
98
28
7
18
44
1.78
55079077--55079110
12
2.8
12
86
0
50
61
0
23
14
1.33
55094909--55094952
20
2.2
20
91
0
70
79
6
0
13
0.92
55095592--55095637
11
4.4
11
83
8
60
28
21
0
50
1.49
55097286--55097321
13
2.8
14
84
16
51
27
25
0
47
1.52
55097273--55097313
18
2.2
19
87
12
59
29
24
0
46
1.53
55097436--55097570
39
3.4
38
73
8
101
28
28
20
23
1.99
55097810--55097848
18
2.1
19
90
4
62
48
10
0
41
1.37
55099164--55099216
5
10.0
5
80
11
61
56
1
0
41
1.10
55099163--55099218
12
4.5
12
81
16
69
55
1
0
42
1.10
55099807--55099832
7
3.7
7
100
0
52
26
0
15
57
1.38
55100450--55100486
18
2.1
18
89
0
56
21
27
10
40
1.86
55100899--55101275
129
2.9
129
94
1
639
34
4
5
55
1.42
55101229--55101316
39
2.3
38
82
2
104
42
6
6
44
1.57
55101711--55102142
217
2.0
217
93
0
749
22
28
17
31
1.97
55104565--55104873
126
2.5
126
93
1
521
26
18
16
38
1.92
55104993--55105041
24
2.0
24
84
7
64
51
24
0
24
1.49
55105005--55105039
16
2.1
17
94
5
63
54
22
0
22
1.45
55105773--55105954
46
4.0
46
90
1
258
21
23
14
40
1.91
55125174--55125232
19
3.1
19
82
2
64
66
0
5
28
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55125165--55125324
47
3.4
46
74
9
119
59
1
5
33
1.30
55125284--55125328
21
2.1
21
88
8
65
57
2
8
31
1.41
55125241--55125334
47
2.0
47
81
10
111
59
1
5
34
1.27
55125565--55125602
20
2.0
20
89
5
60
34
0
0
65
0.93
55129150--55129174
2
12.5
2
100
0
50
0
48
0
52
1.00
55130489--55130524
17
2.1
17
100
0
72
38
11
16
33
1.84
55130595--55130641
20
2.3
20
96
0
85
23
4
12
59
1.51
55130984--55131088
55
1.9
54
84
5
140
40
14
3
40
1.64
55133789--55133898
5
22.0
5
76
7
71
55
16
23
4
1.59
55133800--55133895
40
2.4
40
85
0
138
55
15
23
5
1.61
55133830--55133918
30
3.0
30
86
6
135
52
13
29
4
1.60
55133840--55133917
5
15.6
5
83
0
57
51
14
30
3
1.60
55133826--55133919
10
9.4
10
82
4
91
52
12
28
6
1.64
55137369--55137399
2
15.5
2
100
0
62
48
51
0
0
1.00
55140205--55140263
17
3.6
16
80
15
68
55
0
1
42
1.09
55140207--55140323
62
1.9
59
86
5
162
52
2
3
41
1.32
55140304--55140409
37
3.1
36
75
18
109
52
2
0
43
1.22
55140458--55140533
37
2.1
36
83
11
93
40
2
2
53
1.28
55140546--55140659
62
1.9
59
85
5
156
42
4
3
49
1.39
55148855--55148924
34
2.1
34
97
0
131
34
14
18
32
1.91
55149441--55149489
19
2.9
17
77
16
57
57
0
22
20
1.41
55150456--55150609
75
2.1
75
83
4
195
33
11
26
27
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55156469--55156563
48
2.0
48
85
0
127
36
13
7
42
1.73
55161829--55161879
24
2.1
24
96
0
93
43
25
3
27
1.72
55164284--55164317
12
2.7
13
90
4
52
38
8
0
52
1.33
55168566--55168649
30
2.8
31
87
3
127
55
1
10
32
1.42
55169573--55169634
16
3.9
16
86
0
88
40
1
29
29
1.66
55169573--55169642
32
2.2
32
94
0
122
40
2
27
30
1.71
55169589--55169643
16
3.4
16
87
0
74
43
3
23
29
1.71
55169628--55169715
44
2.0
45
88
6
135
35
5
22
36
1.78
55169814--55169966
58
2.5
60
77
12
150
51
4
1
42
1.30
55169882--55169921
21
2.0
20
90
5
62
55
2
0
42
1.13
55169945--55169990
22
2.1
21
88
11
67
65
2
0
32
1.05
55170093--55170127
13
2.8
12
91
8
61
60
0
8
31
1.27
55170891--55170916
5
5.2
5
100
0
52
80
0
19
0
0.71
55174847--55174888
16
2.5
17
76
11
50
16
0
4
78
0.91
55176511--55176545
16
2.1
17
89
5
54
34
8
0
57
1.29
55183836--55183860
4
6.2
4
100
0
50
0
48
28
24
1.52
55186346--55186379
6
5.7
6
96
0
59
67
29
0
2
1.05
55189178--55189202
4
6.2
4
100
0
50
0
48
28
24
1.52
55193106--55193130
5
5.0
5
100
0
50
0
20
0
80
0.72
55196688--55196794
33
3.3
33
80
5
110
36
11
21
30
1.88
55196777--55196893
33
3.6
33
82
1
137
29
15
27
27
1.96
55202867--55202893
13
2.1
13
100
0
54
37
0
7
55
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55203841--55203895
27
2.0
27
96
0
101
40
12
10
36
1.79
55204106--55204180
33
2.3
33
84
6
107
37
9
21
32
1.85
55204156--55204279
33
3.8
33
78
0
122
31
13
25
29
1.94
55212755--55212845
32
2.8
31
76
20
82
40
7
7
43
1.62
55212885--55212922
18
2.1
18
85
9
51
52
10
7
28
1.64
55218376--55218416
19
2.1
20
90
4
66
2
14
2
80
0.92
55218366--55218411
15
3.0
15
84
12
58
4
17
2
76
1.06
55218420--55218464
5
9.0
5
83
16
58
57
0
0
42
0.98
55218421--55218463
19
2.3
19
92
8
70
58
0
0
41
0.98
55218427--55218492
24
2.7
24
79
9
62
57
6
0
36
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322