Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  156  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51270991--51271194
102
2.0
102
95
1
365
37
35
4
23
1.75
51271162--51271312
30
5.0
30
91
0
239
26
47
3
23
1.67
51271162--51271356
60
3.2
60
88
2
259
26
46
3
23
1.68
51271167--51271356
30
6.3
30
84
3
154
26
46
3
22
1.68
51271167--51271356
90
2.1
90
82
3
231
26
46
3
22
1.68
51271836--51271965
25
5.5
23
73
10
86
35
6
3
55
1.40
51271901--51272051
25
6.0
25
74
11
112
33
6
4
55
1.46
51271980--51272087
22
4.9
22
70
15
71
30
6
5
57
1.47
51272029--51272087
23
2.8
20
72
16
57
32
6
5
55
1.48
51271967--51272072
48
2.2
48
81
8
117
29
6
5
58
1.46
51272202--51272236
16
2.3
15
90
5
52
31
2
2
62
1.24
51275946--51276072
51
2.5
51
94
0
218
33
16
23
26
1.96
51279509--51279721
3
72.7
3
67
15
99
30
4
2
62
1.28
51279573--51279615
14
3.2
13
84
12
52
27
0
0
72
0.85
51279585--51279670
20
4.2
20
78
11
70
29
4
1
65
1.20
51284869--51284915
6
8.3
6
79
13
55
17
0
2
80
0.80
51284866--51284909
16
2.7
15
80
13
52
15
0
2
81
0.78
51284866--51284915
11
4.5
11
82
9
66
18
0
2
80
0.82
51285471--51285539
29
2.3
29
79
20
81
30
7
0
62
1.22
51285468--51285585
44
2.7
44
81
12
136
30
6
0
62
1.21
51285474--51285539
15
4.5
15
83
14
84
30
6
0
63
1.18
51285431--51285549
15
7.1
15
68
19
58
27
6
1
63
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51287353--51287393
20
2.1
20
90
4
66
48
0
26
24
1.51
51288187--51288241
29
2.0
28
82
7
67
36
3
0
60
1.15
51291694--51291731
8
4.6
8
90
6
58
18
0
2
78
0.86
51291694--51291731
17
2.3
16
90
4
58
18
0
2
78
0.86
51293054--51293290
75
3.2
74
89
1
359
33
20
16
29
1.94
51293054--51293347
149
2.0
149
83
4
369
32
21
16
29
1.95
51293508--51293685
73
2.5
71
80
5
200
32
23
16
26
1.96
51312105--51312134
8
3.6
8
91
8
51
20
0
3
76
0.92
51312810--51312874
31
2.1
31
100
0
130
27
12
16
43
1.84
51328422--51328466
18
2.6
17
82
6
56
66
22
2
8
1.30
51330229--51330306
15
5.2
15
67
11
61
44
7
21
25
1.79
51330225--51330306
30
2.7
30
94
0
137
46
7
21
24
1.77
51334891--51334998
15
7.2
15
69
12
87
43
7
23
25
1.79
51334884--51334998
30
3.8
30
97
0
203
44
6
23
25
1.78
51339616--51339664
21
2.4
21
83
10
57
40
4
0
55
1.19
51342611--51342647
17
2.2
17
100
0
74
43
0
5
51
1.24
51347036--51347085
25
1.9
25
84
8
64
54
0
4
42
1.19
51347057--51347125
30
2.4
27
80
17
70
56
0
1
42
1.08
51347085--51347139
20
2.5
21
81
16
67
58
0
0
41
0.98
51347061--51347137
27
3.0
27
80
10
81
57
0
1
41
1.07
51361976--51362040
11
5.9
11
79
0
58
66
0
9
24
1.21
51361943--51362000
30
1.9
30
85
0
80
58
5
3
32
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51366036--51366072
17
2.1
18
85
14
51
40
0
2
56
1.13
51369687--51369711
3
8.3
3
100
0
50
36
0
0
64
0.94
51370523--51370549
11
2.5
11
100
0
54
55
0
0
44
0.99
51377162--51377252
31
3.0
30
75
13
87
42
12
13
31
1.80
51379958--51379995
19
2.1
19
90
5
60
23
10
10
55
1.65
51385554--51385668
56
2.1
56
98
0
221
35
13
18
32
1.90
51394989--51395034
18
2.5
18
80
16
58
28
10
0
60
1.30
51403858--51403888
3
10.3
3
100
0
62
35
0
0
64
0.94
51408503--51408590
42
2.1
42
95
0
158
56
5
11
26
1.56
51417287--51417323
18
2.1
18
89
0
56
54
13
5
27
1.61
51417340--51417385
24
2.0
23
82
4
56
32
6
4
56
1.45
51418060--51418111
17
3.1
17
85
0
68
48
3
7
40
1.50
51418312--51418799
96
5.1
96
90
4
745
31
9
8
51
1.64
51418312--51418799
187
2.6
189
90
3
748
31
9
8
51
1.64
51419681--51419973
90
3.1
94
83
9
389
49
8
10
31
1.68
51420176--51420227
17
3.1
17
91
0
86
38
9
1
50
1.46
51427957--51427989
16
2.1
16
100
0
66
27
24
24
24
2.00
51427987--51428289
41
7.4
42
84
5
293
39
22
19
18
1.93
51427988--51428289
82
3.7
82
80
7
328
39
22
19
18
1.93
51427988--51428289
123
2.5
122
82
5
349
39
22
19
18
1.93
51428446--51428539
14
6.7
14
70
18
52
26
0
27
45
1.54
51428457--51428530
32
2.4
31
79
4
76
24
0
31
44
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51436867--51436977
7
15.7
7
72
15
61
19
0
40
39
1.52
51443377--51443407
14
2.3
13
94
5
53
80
12
6
0
0.89
51446074--51446114
21
1.9
22
90
5
66
39
9
7
43
1.65
51457265--51457305
17
2.4
17
91
0
64
82
0
17
0
0.66
51469191--51469274
39
2.2
40
79
14
95
41
3
0
54
1.17
51474532--51474572
21
2.0
21
90
0
64
29
21
29
19
1.98
51476478--51476511
16
2.1
16
88
0
50
50
14
17
17
1.79
51487553--51487598
23
2.0
22
88
12
67
47
10
4
36
1.58
51487559--51487610
23
2.2
24
83
10
63
44
15
5
34
1.70
51498101--51498183
42
2.0
42
95
0
148
30
20
14
34
1.92
51502188--51502231
23
1.9
23
81
9
54
40
9
9
40
1.68
51513692--51513732
21
2.0
21
81
18
50
31
19
26
21
1.97
51519387--51519416
15
2.0
15
93
0
51
46
23
0
30
1.52
51529272--51529309
11
3.4
11
89
7
58
36
0
5
57
1.21
51529275--51529302
12
2.3
12
100
0
56
28
0
7
64
1.20
51529477--51529527
19
2.6
20
75
12
52
66
7
3
21
1.34
51529504--51529551
22
2.2
22
85
7
62
68
14
4
12
1.34
51530264--51530297
17
2.0
17
94
0
59
44
50
0
5
1.26
51534904--51534937
17
2.0
17
94
0
59
44
50
0
5
1.26
51536096--51536210
19
6.6
18
67
23
66
56
2
1
39
1.23
51536178--51536219
19
2.2
19
86
0
57
66
4
0
28
1.12
51536372--51536478
55
1.9
55
85
7
146
28
6
2
61
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51536425--51536524
9
10.7
9
70
17
53
27
5
2
66
1.23
51537297--51537343
22
2.1
21
81
11
58
55
0
6
38
1.26
51543786--51543833
21
2.3
21
89
7
71
37
31
8
22
1.84
51544122--51544148
7
3.9
7
100
0
54
40
44
0
14
1.46
51546685--51546736
21
2.3
23
75
15
56
57
0
5
36
1.23
51546701--51546742
22
2.0
22
85
4
59
61
0
4
33
1.17
51546698--51546775
32
2.4
32
81
10
79
65
0
2
32
1.06
51546733--51546774
22
2.0
22
90
4
68
69
0
0
30
0.89
51546723--51546794
32
2.2
33
83
13
89
68
0
0
31
0.90
51546729--51546775
10
4.6
10
80
12
51
70
0
0
29
0.88
51547380--51547442
29
2.2
30
77
13
69
36
4
0
58
1.19
51547413--51547451
21
1.9
19
90
10
60
25
7
0
66
1.18
51556885--51556940
27
2.0
28
89
3
87
35
16
1
46
1.57
51561199--51561232
17
2.0
17
94
0
59
44
0
0
55
0.99
51561360--51561433
29
2.5
29
82
8
87
50
14
12
22
1.77
51562540--51562598
22
2.7
23
85
12
72
49
1
0
49
1.11
51563644--51563677
11
3.1
11
88
12
52
70
0
0
29
0.87
51569114--51569141
6
4.7
6
100
0
56
82
0
0
17
0.68
51569221--51569258
16
2.4
16
91
4
60
68
0
0
31
0.90
51570431--51570472
22
1.9
22
85
0
57
16
7
2
73
1.15
51576204--51576238
17
2.0
18
88
5
54
68
0
0
31
0.90
51593875--51593909
18
1.9
18
88
11
54
54
11
0
34
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51596852--51597029
46
3.9
46
99
0
347
24
27
14
33
1.94
51599114--51599146
16
2.1
16
94
0
57
0
27
0
72
0.85
51599213--51599240
2
14.0
2
100
0
56
50
0
0
50
1.00
51599351--51599386
18
2.0
18
94
0
63
58
0
0
41
0.98
51602053--51602107
5
10.4
5
79
11
56
18
1
1
78
0.94
51602051--51602119
25
2.7
25
80
12
70
20
1
1
76
0.94
51602055--51602119
15
4.5
14
84
11
71
20
1
1
76
0.94
51602070--51602128
28
2.1
28
81
6
66
23
1
3
71
1.11
51603025--51603082
4
14.2
4
85
7
55
70
0
1
27
0.97
51603658--51603697
17
2.4
17
83
12
55
32
0
10
57
1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322