genome.fa.s2.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  211  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69597727--69597912	41	4.6	41	88	3	252	24	25	24	25	2.00
69597691--69597912	81	2.8	80	83	4	252	23	26	25	24	2.00
69604899--69605107	41	5.2	40	78	6	127	25	26	23	23	2.00
69604922--69605107	41	4.6	40	87	3	239	24	25	24	25	2.00
69608070--69608103	18	1.9	18	94	5	61	47	11	26	14	1.79
69610060--69610231	67	2.6	65	75	12	174	28	17	30	23	1.97
69616967--69617020	27	2.0	26	85	3	72	16	25	22	35	1.95
69617035--69617115	27	2.9	26	77	12	81	24	23	16	35	1.94
69618558--69618641	38	2.2	37	85	6	114	26	27	22	23	2.00
69620500--69620601	28	3.6	28	92	2	168	33	24	11	30	1.91
69620503--69620627	57	2.2	57	85	2	162	33	24	12	30	1.91
69621326--69621901	289	2.0	289	98	0	1125	37	26	7	28	1.83
69622038--69622077	18	2.0	20	86	13	57	10	22	0	67	1.20
69628844--69628942	28	3.5	28	88	1	135	32	25	13	29	1.93
69639990--69640068	29	2.7	29	92	0	131	31	8	30	29	1.88
69644060--69644269	55	3.9	53	77	8	217	34	17	25	22	1.95
69644068--69644267	108	1.8	110	87	4	298	34	17	25	23	1.95
69644731--69644763	7	4.7	7	100	0	66	0	12	45	42	1.41
69645982--69646024	8	5.4	8	78	10	52	51	20	20	6	1.71
69645982--69646024	16	2.7	16	88	0	68	51	20	20	6	1.71
69646236--69646354	29	4.2	29	81	2	143	29	14	26	30	1.95
69650375--69650452	28	2.7	29	94	4	140	25	33	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69657346--69657379	18	1.9	18	88	5	52	29	14	14	41	1.86
69658731--69658773	16	2.7	16	88	0	59	11	20	16	51	1.75
69662446--69662727	27	10.6	27	68	6	135	29	16	18	36	1.93
69662446--69662738	80	3.7	80	88	0	415	28	16	18	36	1.93
69663061--69663135	18	4.2	18	77	1	71	21	17	17	44	1.87
69672399--69672551	56	2.7	56	87	6	204	26	15	25	32	1.95
69675627--69675822	54	3.6	54	84	0	239	32	23	8	36	1.84
69675638--69675794	27	5.8	27	92	0	251	29	24	8	38	1.84
69675593--69675996	27	14.9	27	80	5	188	37	20	7	34	1.82
69675625--69675823	81	2.5	81	84	0	272	33	23	8	35	1.84
69675917--69676003	29	3.1	28	80	8	106	40	14	9	35	1.79
69676055--69676116	27	2.3	27	83	5	81	35	16	25	22	1.94
69676920--69677003	25	3.4	25	83	6	109	28	20	23	27	1.99
69677136--69677227	42	2.2	42	88	0	130	31	14	19	34	1.91
69686888--69686958	34	2.1	33	84	2	88	28	18	22	30	1.97
69693345--69693588	122	2.0	122	96	1	454	23	9	29	37	1.86
69694340--69694455	27	4.3	27	80	4	126	37	18	19	24	1.94
69694348--69694450	54	1.9	54	88	2	154	35	17	22	24	1.95
69694810--69694857	20	2.4	20	85	0	69	10	12	33	43	1.77
69695072--69695124	19	2.8	19	88	0	79	22	20	11	45	1.83
69695111--69695150	12	3.3	12	82	0	53	20	15	12	52	1.74
69698217--69698435	40	5.5	40	93	2	363	25	28	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69706716--69706934	40	5.5	40	93	2	354	26	28	22	22	1.99
69726393--69726421	13	2.2	13	100	0	58	27	37	13	20	1.91
69743067--69743118	27	2.0	26	84	3	68	40	17	19	23	1.91
69743074--69743134	26	2.3	27	82	2	79	40	14	19	24	1.89
69743593--69743771	27	6.6	27	83	3	227	30	9	19	40	1.83
69747916--69747946	15	2.1	15	93	0	53	29	0	16	54	1.42
69748529--69748660	56	2.4	56	89	0	210	29	14	21	34	1.93
69751342--69751473	66	2.0	66	96	0	246	31	21	12	34	1.91
69752121--69752211	40	2.3	40	86	7	123	29	26	18	25	1.98
69752193--69752230	19	2.0	19	89	0	58	31	34	10	23	1.89
69752159--69752270	59	1.9	59	96	0	206	28	29	16	25	1.97
69752214--69752402	39	4.8	39	85	7	224	23	28	21	25	1.99
69762512--69762706	40	4.9	40	91	0	302	26	21	28	24	1.99
69762512--69762732	40	5.6	40	88	2	196	26	22	28	23	1.99
69772864--69772977	35	3.3	35	73	2	95	28	7	19	43	1.79
69776432--69776464	15	2.1	17	88	11	52	6	18	0	75	1.00
69776731--69776765	7	5.0	7	89	0	52	40	42	0	17	1.49
69778537--69778627	35	2.7	34	88	6	132	63	7	9	18	1.48
69778614--69778700	40	2.2	40	89	2	129	59	10	1	28	1.37
69783991--69784020	15	2.0	15	100	0	60	33	40	6	20	1.78
69784128--69784339	46	4.5	46	77	12	168	25	28	17	28	1.98
69786682--69786716	18	2.0	18	88	5	54	28	14	20	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69793486--69793919	217	2.0	217	99	0	859	31	21	19	27	1.97
69795057--69795138	30	2.8	30	90	1	130	30	26	12	30	1.92
69799320--69799351	16	2.0	16	93	0	55	34	31	9	25	1.87
69799533--69799621	30	3.0	30	90	3	137	28	28	13	30	1.94
69806211--69806361	47	3.2	45	74	10	126	24	27	18	29	1.98
69806199--69806328	47	2.8	48	77	10	135	25	29	17	27	1.98
69809550--69809600	25	2.0	25	92	0	84	19	23	13	43	1.87
69812952--69813046	44	2.2	44	83	7	115	24	20	24	31	1.98
69814708--69814760	26	2.0	26	82	7	63	26	13	20	39	1.89
69816235--69816342	26	4.2	26	91	0	171	37	23	6	32	1.80
69816235--69816342	52	2.1	52	94	0	189	37	23	6	32	1.80
69818469--69818517	19	2.6	17	81	12	53	4	8	16	71	1.26
69819941--69820016	37	2.1	37	100	0	152	23	28	18	28	1.98
69819949--69820027	37	2.1	37	92	0	131	26	24	21	27	1.99
69822765--69822828	32	2.0	32	96	0	119	31	20	9	39	1.84
69826799--69826896	19	5.2	19	86	7	137	39	10	15	34	1.81
69826805--69826896	36	2.4	37	89	7	132	40	10	14	34	1.81
69829408--69829549	40	3.5	40	84	0	185	25	20	24	29	1.99
69830237--69830290	18	3.0	18	77	0	54	12	29	0	57	1.36
69833142--69833172	15	2.0	16	93	6	55	51	3	6	38	1.44
69837800--69837884	31	2.8	31	78	8	111	22	24	18	34	1.96
69838104--69838172	25	2.8	25	88	2	95	27	23	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69838091--69838173	25	3.4	24	82	11	89	26	22	20	30	1.98
69838617--69838656	21	2.0	21	90	5	64	22	35	20	22	1.96
69840432--69840467	17	2.1	17	94	0	63	27	11	13	47	1.77
69843432--69843520	27	3.3	27	84	6	83	41	16	10	31	1.82
69843533--69843715	27	6.6	27	83	7	204	28	22	9	39	1.85
69843540--69843707	87	1.9	87	86	2	239	27	23	9	39	1.85
69843625--69843744	54	2.2	54	81	0	150	32	19	9	39	1.83
69843640--69843919	27	10.3	27	78	6	152	36	18	9	35	1.83
69843708--69843926	27	8.0	27	78	5	190	39	17	9	33	1.82
69843945--69844068	54	2.3	54	78	8	119	35	18	23	22	1.96
69843977--69844068	27	3.4	27	84	3	123	33	19	26	20	1.96
69844869--69845044	26	6.8	26	90	0	273	27	23	22	25	2.00
69844869--69845044	78	2.3	78	94	1	309	27	23	22	25	2.00
69845189--69845280	42	2.2	42	90	0	139	30	14	20	34	1.92
69845304--69845411	31	3.5	31	81	7	125	29	18	24	27	1.98
69849452--69849490	19	2.1	19	100	0	78	56	10	0	33	1.33
69859579--69859628	25	2.0	25	84	7	66	52	10	0	38	1.35
69865865--69865956	48	1.9	48	90	0	148	18	18	26	36	1.94
69865867--69865995	48	2.7	48	82	7	138	19	19	27	33	1.96
69876019--69876052	9	3.8	9	96	0	59	20	0	20	58	1.39
69876449--69876649	43	4.7	43	83	3	226	26	14	24	33	1.94
69877985--69878070	42	2.0	42	95	0	154	39	6	18	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69879034--69879270	48	5.0	47	78	4	224	24	28	18	28	1.98
69879036--69879267	96	2.4	95	82	7	265	24	28	19	28	1.98
69879655--69879922	70	3.8	70	90	0	430	38	17	13	31	1.88
69883210--69883286	38	2.0	38	100	0	154	36	18	24	20	1.95
69885280--69885392	48	2.4	48	84	0	154	19	15	25	39	1.90
69888069--69888272	44	4.7	44	79	14	235	28	26	20	24	1.99
69888069--69888285	43	5.0	43	76	16	216	29	26	19	23	1.98
69888069--69888270	87	2.3	87	95	0	359	29	26	20	24	1.99
69890662--69890845	26	7.1	26	94	0	323	31	5	26	36	1.79
69898743--69898815	36	2.0	36	86	0	101	21	24	13	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322