Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  122  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39899577--39899685
55
2.0
55
92
0
182
49
12
13
23
1.77
39906395--39906708
39
8.1
39
93
0
504
23
29
25
21
1.99
39911279--39911403
63
2.0
63
98
0
241
39
17
9
33
1.82
39913246--39913467
40
5.6
40
91
1
349
28
25
22
23
1.99
39915972--39916148
40
4.4
40
95
0
309
22
19
29
28
1.98
39916002--39916168
80
2.1
80
90
0
262
23
22
28
25
1.99
39928270--39928594
65
5.0
65
99
0
641
30
21
15
32
1.94
39937590--39937952
27
13.7
26
70
12
82
39
19
8
32
1.82
39937701--39937951
54
4.6
54
85
1
270
39
19
8
31
1.82
39937744--39937954
109
1.9
109
85
5
293
38
18
9
33
1.82
39937937--39938266
27
12.3
27
88
0
464
33
20
21
25
1.97
39938693--39938757
22
3.0
22
75
8
60
20
20
23
36
1.95
39947941--39948090
41
3.7
41
82
1
203
28
26
23
21
1.99
39955755--39955920
41
4.1
41
92
1
253
27
27
22
21
1.99
39958289--39958497
48
4.5
48
73
9
189
26
20
24
28
1.99
39962901--39962953
13
3.9
13
83
11
63
35
1
0
62
1.06
39962901--39962953
25
2.2
25
83
12
67
35
1
0
62
1.06
39972393--39972484
45
2.0
46
85
8
127
26
27
17
29
1.97
39973544--39973603
30
2.0
30
90
6
95
16
26
35
21
1.95
39974269--39974325
30
1.9
30
88
0
87
24
21
17
36
1.94
39974586--39974619
16
2.1
16
100
0
68
44
11
5
38
1.65
39975824--39975874
25
2.0
26
88
3
77
43
3
11
41
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39979159--39979234
39
1.9
39
89
0
116
36
7
14
40
1.75
39979168--39979258
39
2.3
39
84
3
121
37
8
14
39
1.77
39988891--39988928
14
2.7
14
95
0
67
34
31
7
26
1.85
39992547--39992599
24
2.2
24
89
0
79
20
18
18
41
1.91
40005684--40005714
11
2.8
11
95
0
53
67
6
9
16
1.39
40011661--40011694
17
2.1
15
89
10
50
64
2
0
32
1.08
40011884--40011924
20
2.1
20
86
4
57
31
2
17
48
1.60
40012126--40012188
28
2.3
28
84
15
80
28
3
3
65
1.24
40012126--40012188
26
2.3
26
84
15
76
28
3
3
65
1.24
40013800--40013827
5
5.6
5
100
0
56
57
0
0
42
0.99
40015052--40015108
21
2.7
21
80
2
60
28
1
8
61
1.36
40017693--40017876
92
2.0
92
96
0
341
41
17
13
27
1.87
40023881--40023913
11
3.0
11
95
0
57
78
0
21
0
0.75
40023864--40023947
41
2.1
40
90
2
132
72
5
14
7
1.25
40023882--40023972
47
2.0
46
88
2
137
71
6
14
7
1.29
40030453--40030516
29
2.2
30
94
2
112
29
20
29
20
1.97
40035371--40035440
30
2.3
31
82
7
90
34
18
2
44
1.65
40038715--40038740
7
3.7
7
100
0
52
30
0
26
42
1.56
40041116--40041149
12
2.8
13
91
8
54
76
2
0
20
0.92
40041086--40041150
32
2.1
31
82
8
78
72
3
3
21
1.12
40046165--40046220
12
4.3
13
78
14
62
17
5
0
76
0.96
40048329--40048564
87
2.7
84
83
7
260
38
18
6
36
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40053773--40054379
87
7.0
86
74
14
521
27
20
18
33
1.96
40053900--40054384
174
2.8
174
91
2
771
27
20
19
33
1.96
40070921--40071018
44
2.2
44
85
7
128
34
25
20
19
1.96
40071879--40071920
18
2.3
19
80
12
52
33
0
2
64
1.07
40079296--40079332
19
2.0
18
94
5
65
0
27
2
70
1.01
40079383--40079424
18
2.3
19
80
12
52
33
0
4
61
1.17
40081903--40081945
21
2.0
23
86
9
63
44
0
0
55
0.99
40081957--40081993
16
2.3
16
86
13
58
59
0
0
40
0.97
40082523--40082562
14
2.8
15
88
7
57
32
15
7
45
1.74
40088566--40088624
19
3.1
18
82
4
64
35
1
20
42
1.62
40088746--40089040
126
2.3
126
98
0
563
35
18
20
25
1.95
40088940--40089139
99
2.0
99
99
0
391
36
19
20
25
1.95
40088814--40089364
225
2.4
225
98
0
1048
35
18
19
25
1.95
40089166--40089463
99
3.0
99
98
0
569
36
18
19
25
1.94
40089364--40089901
126
4.4
126
77
10
657
34
20
20
24
1.96
40088940--40089589
324
2.0
324
97
0
1237
35
18
19
25
1.95
40089424--40089897
235
2.0
234
94
0
831
34
20
20
24
1.97
40089658--40089901
127
1.9
127
95
0
445
35
20
20
24
1.96
40092709--40092761
21
2.7
20
88
11
83
58
3
5
32
1.39
40093213--40093303
38
2.4
38
100
0
182
19
20
34
25
1.97
40098158--40098191
6
5.5
6
86
6
50
79
0
5
14
0.91
40098158--40098191
13
2.8
12
82
8
50
79
0
5
14
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40109691--40109715
13
1.9
13
100
0
50
36
8
24
32
1.84
40113646--40113747
38
2.7
38
82
8
127
34
5
17
42
1.74
40120074--40120306
51
4.7
49
80
10
276
26
20
24
28
1.99
40120074--40120319
100
2.5
100
97
0
456
26
20
24
28
1.99
40124759--40124891
51
2.6
51
80
2
171
27
19
24
28
1.99
40124759--40124899
49
2.8
50
80
2
176
26
20
24
28
1.99
40132745--40132849
49
2.1
49
81
6
115
32
20
29
18
1.96
40133319--40133371
24
2.2
24
93
0
88
18
15
20
45
1.85
40133329--40133386
24
2.4
24
82
0
62
24
15
18
41
1.89
40134193--40134295
51
2.0
51
98
0
197
41
9
3
44
1.55
40147248--40147281
11
3.1
11
86
0
50
64
11
8
14
1.49
40150302--40150347
12
4.0
12
75
11
51
34
28
4
32
1.77
40150304--40150347
22
2.0
22
95
0
79
31
29
4
34
1.78
40150650--40150688
13
2.9
13
84
3
51
48
7
10
33
1.66
40158867--40159045
99
1.8
99
90
0
286
26
15
27
31
1.95
40163130--40163159
15
2.0
15
93
0
51
50
0
10
40
1.36
40165883--40165922
20
2.0
20
95
0
71
50
10
22
17
1.76
40165881--40165926
20
2.5
18
80
16
58
52
10
21
15
1.73
40166853--40166896
18
2.5
18
81
3
54
18
4
0
77
0.94
40167619--40167796
98
1.8
98
93
0
311
24
15
29
30
1.96
40167830--40167879
21
2.4
21
83
12
68
82
4
14
0
0.82
40167839--40167878
13
3.2
12
85
7
53
85
2
12
0
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40167833--40167879
11
4.6
10
78
21
53
82
2
14
0
0.75
40168444--40168473
15
2.0
15
93
0
51
50
0
10
40
1.36
40169422--40169451
12
2.5
12
100
0
60
16
10
6
66
1.41
40170546--40170594
25
2.0
25
95
0
89
26
22
6
44
1.76
40181267--40181308
6
6.7
6
84
15
50
0
0
14
85
0.59
40181268--40181308
11
3.8
11
84
15
59
0
0
14
85
0.60
40181273--40181315
19
2.2
20
87
4
61
0
2
11
86
0.67
40181266--40181314
26
1.9
25
91
4
80
0
2
12
85
0.68
40200220--40200299
7
11.4
7
75
10
65
17
1
36
45
1.57
40200210--40200299
21
4.3
20
71
13
65
16
1
37
44
1.55
40200720--40200753
18
1.9
18
88
5
52
50
2
2
44
1.32
40201013--40201066
20
2.7
20
77
5
56
38
3
0
57
1.17
40201128--40201203
39
1.9
39
86
0
107
40
14
23
21
1.90
40201307--40201341
18
1.9
18
94
0
61
5
31
2
60
1.35
40201374--40201409
18
2.0
18
88
0
54
8
41
2
47
1.48
40201292--40201440
72
2.1
72
89
0
226
10
35
4
48
1.59
40201645--40201674
15
2.0
15
100
0
60
40
0
6
53
1.27
40204366--40204535
43
4.0
43
89
3
252
25
15
29
30
1.96
40205770--40205822
24
2.2
24
86
0
70
24
16
15
43
1.87
40211238--40211292
27
2.1
26
83
16
69
3
1
30
63
1.22
40212027--40212141
30
3.8
30
88
0
176
25
48
4
21
1.68
40212027--40212141
60
1.9
60
92
0
194
25
48
4
21
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40212637--40212758
25
5.0
25
71
10
74
36
4
2
57
1.31
40212700--40212758
25
2.4
25
85
0
82
35
3
0
61
1.13
40222352--40222549
74
2.7
73
90
2
297
28
16
22
31
1.96
40222367--40222553
73
2.5
74
92
0
304
28
17
24
29
1.97
40222572--40222599
14
2.0
14
100
0
56
14
21
7
57
1.61
40222365--40222838
240
2.0
238
93
1
815
27
16
21
34
1.95
40222589--40222822
76
3.1
74
82
4
281
29
15
20
34
1.94
40222809--40222848
14
2.8
14
92
3
62
15
12
5
67
1.38
40223607--40223679
30
2.4
30
93
2
128
26
49
4
20
1.67
40223659--40223687
13
2.2
13
100
0
58
31
48
6
13
1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322