genome.fa.s2.2.7.7.80.10.50.1000.307.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  307  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101968565--101968736	46	3.7	46	77	13	190	20	20	29	29	1.98
101968558--101968729	93	1.8	93	92	0	290	21	21	29	27	1.99
101983295--101983458	46	3.5	45	82	7	170	23	29	19	28	1.98
101983290--101983505	47	4.6	46	74	15	160	24	29	18	27	1.98
101983288--101983514	93	2.4	92	77	10	230	23	29	18	27	1.98
101983876--101984039	30	5.5	30	100	0	328	28	28	15	27	1.96
101997723--101997818	49	2.0	49	93	0	165	30	26	21	21	1.99
102000502--102000671	43	4.0	43	92	0	277	31	32	25	9	1.88
102000752--102000826	38	1.9	40	86	5	109	24	28	25	22	2.00
102007829--102008002	87	2.0	87	100	0	348	32	22	12	32	1.92
102010894--102011018	41	3.0	41	96	2	225	35	10	17	36	1.84
102011815--102011897	41	2.0	41	95	0	148	42	15	20	21	1.89
102018147--102018329	79	2.3	81	83	7	223	24	27	22	24	2.00
102018126--102018329	40	5.1	40	81	8	229	24	27	22	25	2.00
102031831--102031917	42	2.1	42	100	0	174	42	12	19	25	1.86
102034623--102034668	22	2.1	22	100	0	92	21	8	0	69	1.15
102046865--102046924	20	3.0	20	81	18	72	53	8	0	38	1.31
102047833--102047875	19	2.1	21	87	8	63	41	0	2	55	1.12
102052435--102052531	48	2.0	48	95	0	176	20	15	23	40	1.91
102053765--102053825	13	4.7	13	87	0	95	36	22	6	34	1.81
102054804--102054828	4	6.2	4	100	0	50	24	0	0	76	0.80
102057273--102057368	46	2.1	46	100	0	192	22	6	19	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102064086--102064250	43	3.9	43	78	7	167	25	17	25	31	1.97
102064086--102064250	86	1.9	85	81	8	201	25	17	25	31	1.97
102067211--102067239	12	2.4	12	100	0	58	68	6	0	24	1.13
102067179--102067228	26	2.0	25	84	7	66	62	2	0	36	1.07
102067212--102067308	32	3.2	32	76	13	89	64	8	0	26	1.21
102073137--102073167	5	6.2	5	100	0	62	38	0	0	61	0.96
102073128--102073176	13	3.6	13	84	10	62	38	0	4	57	1.18
102073261--102073293	13	2.5	13	90	9	50	78	0	21	0	0.75
102074040--102074099	19	3.3	19	66	34	51	36	0	13	50	1.42
102076809--102077025	92	2.4	92	87	0	317	21	22	11	44	1.84
102076816--102077018	46	4.4	47	88	3	288	20	22	11	45	1.83
102076990--102077115	45	2.8	45	86	0	171	19	23	19	37	1.94
102083921--102083953	16	1.9	18	88	11	52	54	3	9	33	1.47
102085508--102085587	20	4.2	18	76	14	72	57	1	0	41	1.07
102085488--102085587	38	2.6	38	78	10	96	54	1	0	45	1.06
102086509--102086547	20	2.0	20	89	0	60	48	35	0	15	1.45
102086777--102086807	14	2.2	14	94	0	53	41	0	3	54	1.16
102091111--102091317	95	2.1	98	80	10	237	38	1	17	42	1.61
102091293--102091322	15	2.0	15	93	0	51	16	0	36	46	1.47
102091391--102091690	126	2.4	126	88	2	455	33	18	20	28	1.95
102093349--102093434	43	2.0	43	100	0	172	32	18	20	27	1.96
102094723--102094953	116	2.0	116	98	0	444	47	7	2	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102096886--102096916	15	2.1	15	93	0	53	70	0	6	22	1.09
102099261--102099287	6	4.5	6	100	0	54	0	14	0	85	0.61
102100578--102100620	20	2.2	20	91	0	68	25	11	11	51	1.72
102111467--102111513	22	2.1	22	100	0	94	46	8	10	34	1.69
102125900--102125930	16	1.9	16	93	0	53	74	0	9	16	1.07
102125968--102126005	14	2.9	13	88	7	51	76	0	21	2	0.91
102127332--102127363	13	2.5	13	94	0	55	25	0	18	56	1.42
102127348--102127401	22	2.5	22	96	0	99	25	1	18	53	1.54
102127875--102127921	20	2.3	20	88	0	67	19	38	29	12	1.89
102132445--102132486	9	4.7	9	80	11	50	47	30	0	21	1.51
102134078--102134122	18	2.4	19	85	14	58	35	0	4	60	1.17
102137348--102137402	25	2.3	23	78	12	58	43	3	16	36	1.65
102137464--102137531	25	2.9	24	82	6	77	58	5	5	29	1.45
102137434--102137581	77	1.9	80	81	4	185	58	4	6	29	1.44
102137933--102137971	16	2.4	16	86	0	51	43	28	5	23	1.75
102138134--102138187	18	3.3	18	66	28	57	20	7	50	22	1.73
102138130--102138197	30	2.3	30	97	0	127	16	5	52	25	1.65
102138445--102138505	17	3.4	17	65	12	50	31	3	13	52	1.56
102138419--102138545	37	3.4	37	88	4	177	31	4	14	49	1.63
102138482--102138542	17	3.4	17	68	12	50	34	3	11	50	1.55
102138555--102138621	9	7.4	9	87	0	89	23	14	20	40	1.90
102149510--102149585	37	2.1	36	83	11	93	53	2	2	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102149989--102150040	19	2.8	19	88	2	70	38	3	3	53	1.37
102149989--102150043	9	5.9	9	76	6	56	36	3	3	56	1.34
102159035--102159140	43	2.5	43	84	0	131	38	18	18	23	1.93
102159071--102159229	40	3.9	39	80	8	135	40	17	16	25	1.90
102159157--102159221	20	3.2	20	66	0	58	32	20	20	27	1.97
102159167--102159228	20	3.1	20	69	0	61	37	20	17	24	1.94
102159115--102159231	40	2.9	40	85	2	137	40	17	16	26	1.90
102161927--102162049	33	3.8	33	76	11	101	33	12	21	32	1.91
102163677--102163737	21	2.8	23	83	14	85	34	26	26	13	1.93
102163667--102163749	21	3.8	23	79	9	84	37	24	24	14	1.92
102164120--102164177	15	3.8	15	88	2	89	51	12	0	36	1.39
102165275--102165322	5	9.0	5	82	13	60	58	2	0	39	1.10
102165282--102165359	8	10.0	8	73	19	67	55	2	0	42	1.13
102165489--102165539	21	2.4	22	80	6	61	58	3	0	37	1.16
102165705--102165751	19	2.3	22	79	17	57	38	12	4	44	1.62
102171664--102171814	42	3.6	42	82	6	162	28	15	25	29	1.96
102173321--102173354	15	2.3	15	94	0	59	58	11	14	14	1.63
102174367--102174410	1	44.0	1	81	0	52	90	9	0	0	0.44
102174364--102174403	10	4.0	10	100	0	80	90	10	0	0	0.47
102174360--102174410	20	2.5	21	90	9	88	88	11	0	0	0.52
102174725--102174758	13	2.8	12	82	8	50	85	2	0	11	0.71
102178548--102178616	34	2.0	34	94	0	120	39	20	5	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102181669--102181697	6	4.8	6	100	0	58	17	0	31	51	1.45
102187511--102187618	26	4.2	26	93	0	189	36	24	7	32	1.83
102188401--102188451	20	2.5	20	100	0	102	27	11	21	39	1.88
102188885--102188992	23	4.7	23	76	8	103	37	15	15	30	1.89
102214061--102214095	17	1.9	19	88	11	56	57	8	28	5	1.52
102216753--102216808	22	2.5	23	80	8	71	14	28	25	32	1.94
102224767--102224847	39	2.0	41	85	4	112	34	22	14	28	1.94
102228531--102228564	15	2.3	15	90	10	52	32	2	8	55	1.45
102228636--102228795	45	3.6	45	85	3	207	38	18	18	25	1.92
102228791--102228922	46	2.9	44	78	10	115	46	12	19	20	1.82
102228813--102228924	46	2.5	45	86	7	147	47	12	20	19	1.82
102231425--102231462	16	2.4	16	82	4	51	55	5	7	31	1.51
102234386--102234411	13	2.0	13	100	0	52	38	23	0	38	1.55
102234889--102234984	6	15.7	6	72	16	72	47	14	16	20	1.82
102234898--102234995	31	3.2	31	88	0	124	48	13	17	20	1.80
102235145--102235246	27	3.8	26	87	5	123	37	21	22	18	1.94
102235405--102235469	22	3.0	22	77	8	69	33	21	23	21	1.97
102235896--102236197	27	11.3	27	84	2	324	26	19	19	34	1.95
102235924--102236116	80	2.4	80	89	1	278	25	21	18	33	1.96
102235898--102236190	107	2.7	107	83	2	338	26	19	19	34	1.96
102236202--102236398	27	7.3	27	84	3	218	40	8	23	28	1.83
102236193--102236398	80	2.6	78	84	6	234	39	8	22	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102236202--102236376	54	3.3	54	90	2	246	41	7	22	28	1.81
102236245--102236418	80	2.2	80	84	5	233	40	8	20	31	1.82
102236379--102236711	27	12.3	25	78	11	252	32	9	18	39	1.82
102236377--102236711	54	6.2	54	86	2	384	31	8	19	40	1.82
102236452--102236711	27	9.6	27	83	1	324	31	8	19	40	1.81
102238142--102238353	50	4.2	48	75	7	165	39	15	12	32	1.85
102238150--102238353	100	2.0	100	84	1	266	40	15	11	32	1.83
102251351--102251427	39	2.0	38	85	10	102	32	29	16	20	1.95
102260303--102260338	18	1.9	19	94	5	65	16	5	0	77	0.94
102261226--102261295	28	2.5	28	80	13	74	67	5	4	22	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322