Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  320  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105961758--105961793
18
2.0
18
89
10
56
63
0
0
36
0.94
105964564--105965029
230
2.0
233
89
3
724
30
18
16
33
1.94
105966422--105966482
31
1.9
32
83
9
81
60
1
1
36
1.16
105967036--105967061
9
2.9
9
100
0
52
23
0
0
76
0.78
105967435--105967492
25
2.5
23
83
8
64
37
1
1
58
1.18
105974362--105974424
31
2.1
29
82
5
72
39
12
3
44
1.59
105975889--105975950
29
2.2
29
88
8
92
46
4
0
48
1.23
105983373--105983562
96
2.0
96
100
0
380
52
15
12
19
1.75
105990965--105991059
45
2.1
44
86
1
127
34
5
26
33
1.79
105991178--105991228
27
2.0
25
85
11
68
49
3
0
47
1.20
105991221--105991255
18
2.0
17
88
5
52
54
0
0
45
0.99
105991368--105991402
18
2.0
17
88
5
52
54
0
0
45
0.99
105991140--105991414
147
1.9
149
94
1
491
45
3
2
47
1.35
105991493--105991527
18
2.0
17
88
5
52
60
0
0
40
0.97
105991351--105991647
124
2.4
121
89
4
447
51
5
2
41
1.37
105993624--105993655
8
4.0
8
95
0
55
71
15
0
12
1.14
105997614--105997673
31
2.0
31
83
9
79
45
5
23
26
1.73
106000537--106000801
131
2.0
131
82
1
316
35
12
12
40
1.81
106001220--106001258
20
2.0
20
84
0
51
46
7
0
46
1.31
106003138--106003173
18
1.9
19
88
5
56
33
27
0
38
1.57
106003171--106003225
28
1.9
29
85
3
76
34
16
1
47
1.57
106004484--106004513
16
1.9
15
93
6
51
63
6
0
30
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106023749--106023788
22
1.9
20
85
10
53
60
12
12
15
1.60
106027001--106027026
10
2.6
10
100
0
52
15
0
7
76
0.99
106026999--106027027
10
2.7
11
89
10
51
17
0
6
75
1.01
106026993--106027047
22
2.6
21
78
21
62
21
0
7
70
1.11
106029649--106029706
30
1.9
30
82
6
73
55
0
0
44
0.99
106030034--106030079
6
7.7
6
90
9
76
17
15
36
30
1.91
106033781--106033836
3
18.7
3
100
0
112
33
0
0
66
0.92
106036494--106036543
21
2.4
20
83
9
64
60
2
0
38
1.09
106037278--106037321
22
2.0
23
82
13
56
45
2
0
52
1.13
106038150--106038205
28
2.0
27
83
10
69
58
7
7
26
1.50
106039397--106039452
22
2.5
21
78
18
60
57
5
8
28
1.52
106046807--106046940
68
2.0
68
98
0
259
45
13
17
23
1.84
106054454--106054499
15
3.1
15
96
0
83
17
8
54
19
1.68
106061634--106061868
50
4.6
50
80
6
231
28
21
26
23
1.99
106063713--106063752
19
2.1
19
90
0
62
65
2
5
27
1.27
106071390--106071420
14
2.2
14
100
0
62
35
0
0
64
0.94
106074790--106075824
510
2.0
511
94
0
1820
28
19
25
26
1.98
106078175--106078200
13
2.0
13
100
0
52
23
23
23
30
1.99
106079316--106079341
13
2.0
13
100
0
52
23
23
23
30
1.99
106080460--106080485
13
2.0
13
100
0
52
23
23
23
30
1.99
106081604--106081629
13
2.0
13
100
0
52
23
23
23
30
1.99
106082748--106082773
13
2.0
13
100
0
52
23
23
23
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106083892--106083917
13
2.0
13
100
0
52
23
23
23
30
1.99
106085036--106085061
13
2.0
13
100
0
52
23
23
23
30
1.99
106086180--106086205
13
2.0
13
100
0
52
23
23
23
30
1.99
106087324--106087349
13
2.0
13
100
0
52
23
23
23
30
1.99
106096265--106096306
21
2.0
21
95
0
75
45
14
11
28
1.80
106097569--106103938
989
6.4
989
99
0
12722
29
17
23
30
1.97
106113431--106113500
27
2.6
28
82
11
83
27
20
30
22
1.98
106113740--106113769
16
1.9
15
93
6
51
26
0
3
70
1.03
106114094--106114162
8
8.1
8
76
10
66
26
2
2
68
1.18
106114092--106114154
26
2.4
27
87
7
87
26
3
3
66
1.22
106114105--106114162
17
3.4
17
79
11
73
27
1
1
68
1.08
106114611--106114657
7
6.6
7
76
13
51
40
0
2
57
1.11
106114965--106114991
8
3.4
8
100
0
54
40
0
0
59
0.98
106114965--106114999
16
2.2
16
89
0
52
40
0
2
57
1.14
106119445--106119502
30
1.9
30
89
0
89
20
41
25
12
1.87
106120570--106120596
14
1.9
14
100
0
54
14
3
7
74
1.18
106124095--106124126
17
1.9
16
93
6
55
62
0
0
37
0.95
106131428--106131456
14
2.1
14
100
0
58
86
0
0
13
0.58
106131471--106131504
14
2.5
13
90
4
50
79
0
0
20
0.73
106133480--106133515
16
2.2
16
90
0
54
27
5
0
66
1.13
106135437--106136118
340
2.0
340
96
0
1247
28
21
22
27
1.99
106142154--106142371
4
54.5
4
100
0
436
24
0
25
50
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106143323--106143428
9
11.8
9
71
15
51
48
16
5
29
1.70
106143322--106143433
18
6.2
18
77
12
95
49
16
5
28
1.68
106143322--106143433
27
4.1
27
79
2
91
49
16
5
28
1.68
106143435--106143524
37
2.4
36
87
7
119
50
13
4
32
1.61
106143442--106143502
17
3.4
17
68
12
50
54
11
1
32
1.46
106145182--106145258
39
2.0
39
97
0
145
41
19
12
25
1.87
106161400--106161430
16
1.9
16
100
0
62
19
12
22
45
1.84
106169572--106169630
29
2.0
29
96
0
109
45
10
20
23
1.81
106169702--106169850
56
2.6
57
92
2
246
30
17
11
40
1.85
106169800--106169896
46
2.1
46
86
0
131
30
14
13
41
1.84
106172612--106172642
15
2.1
15
93
0
53
45
0
9
45
1.36
106172717--106172742
12
2.2
12
100
0
52
38
15
7
38
1.76
106177260--106177290
15
2.1
15
93
0
53
45
0
9
45
1.36
106182366--106182399
17
2.0
17
94
0
59
44
50
0
5
1.26
106187005--106187038
17
2.0
17
94
0
59
44
50
0
5
1.26
106192690--106192801
59
1.9
59
85
3
154
25
16
8
50
1.74
106196607--106196715
58
1.9
57
81
5
130
25
14
11
48
1.77
106196593--106196717
58
2.2
57
77
7
126
23
14
10
52
1.72
106198515--106198607
18
5.2
18
90
0
150
27
24
16
31
1.96
106206042--106206106
33
1.9
34
84
9
89
29
16
20
33
1.95
106213923--106213986
34
2.0
31
82
14
76
18
6
28
46
1.73
106221397--106221425
5
5.8
5
100
0
58
41
20
17
20
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106228683--106228707
5
5.0
5
100
0
50
20
0
80
0
0.72
106229186--106229212
13
2.1
13
100
0
54
29
0
7
62
1.22
106234178--106236005
210
8.7
210
92
0
2710
30
19
18
32
1.96
106234178--106236005
839
2.2
840
89
0
2784
30
19
18
32
1.96
106238452--106238489
20
1.9
19
89
5
58
73
2
0
23
0.95
106238735--106238806
35
2.2
31
80
14
74
38
1
2
56
1.22
106243627--106243719
18
5.1
18
70
22
77
47
1
1
50
1.15
106260814--106262419
210
7.6
210
89
0
2207
30
18
18
33
1.95
106268521--106268676
41
3.8
41
83
4
188
19
19
28
32
1.96
106268521--106268676
82
1.9
83
86
1
224
19
19
28
32
1.96
106269004--106269041
14
2.7
14
91
0
67
26
0
28
44
1.54
106269128--106269192
14
4.6
14
80
3
69
26
0
38
35
1.57
106269367--106269406
14
2.9
14
84
0
62
12
0
47
40
1.41
106272316--106273579
632
2.0
632
100
0
2528
28
22
20
28
1.99
106274050--106274093
21
2.1
22
87
8
65
25
4
11
59
1.51
106274473--106274609
43
3.2
43
78
0
112
25
18
29
26
1.98
106277525--106279162
210
7.8
210
88
1
2189
30
18
18
32
1.95
106296325--106296371
21
2.2
22
92
3
78
21
19
38
21
1.94
106297410--106298457
210
5.0
210
93
0
1659
30
17
19
32
1.95
106305267--106305323
25
2.3
25
78
6
62
22
1
3
71
1.10
106305231--106305303
31
2.4
31
79
9
87
16
5
5
72
1.22
106305282--106305321
12
3.1
13
89
10
64
22
0
0
77
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106305328--106305402
23
3.1
25
74
14
77
37
0
4
58
1.17
106305395--106305443
21
2.4
21
89
3
73
34
2
0
63
1.06
106305365--106305429
34
1.9
33
90
3
103
35
1
1
61
1.15
106305462--106305521
30
2.0
31
86
3
86
31
1
3
63
1.20
106306198--106306255
21
2.8
21
84
7
75
44
0
0
55
0.99
106306299--106306363
32
2.0
34
87
6
98
32
1
4
61
1.26
106310434--106310559
42
3.0
42
96
0
234
36
30
5
26
1.80
106314839--106316253
210
6.7
210
93
1
2234
30
17
20
32
1.95
106317280--106317338
19
3.4
19
68
22
65
15
22
3
59
1.51
106317276--106317339
33
1.9
33
100
0
128
17
21
4
56
1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322