Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  251  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83300055--83300127
25
2.8
25
80
14
85
64
2
4
28
1.26
83300244--83300423
3
59.7
3
73
14
131
65
2
5
26
1.29
83300332--83300377
20
2.2
22
80
11
60
65
2
8
23
1.32
83300289--83300443
28
5.7
28
75
13
103
63
1
6
27
1.29
83300475--83300543
3
22.7
3
76
8
50
59
4
5
30
1.40
83300526--83300575
25
2.0
25
81
14
59
58
4
6
32
1.41
83303100--83303145
22
2.1
22
100
0
92
17
17
4
60
1.51
83303371--83303479
56
1.9
56
83
3
139
34
5
5
54
1.47
83307422--83307461
17
2.3
19
76
24
52
42
12
5
40
1.64
83307813--83307843
16
1.9
16
100
0
62
51
0
6
41
1.27
83308194--83308239
23
2.0
24
82
4
58
26
13
2
58
1.46
83308355--83308398
24
2.0
23
82
13
56
45
0
4
50
1.22
83319606--83319688
39
2.1
39
82
4
96
9
56
2
31
1.44
83321079--83321161
30
2.8
29
74
18
89
34
0
9
55
1.33
83321976--83322063
22
4.0
22
87
0
113
44
14
11
29
1.80
83326599--83327714
281
4.0
280
96
1
2042
37
16
12
33
1.86
83326599--83327714
559
2.0
560
97
0
2126
37
16
12
33
1.86
83333553--83333601
26
2.0
26
84
8
66
28
0
8
63
1.23
83334843--83334884
16
2.6
16
84
0
57
57
7
0
35
1.26
83344625--83344697
31
2.4
30
93
4
128
39
15
6
38
1.74
83347580--83347891
50
6.6
48
76
11
256
23
29
17
29
1.97
83347722--83347888
46
3.6
45
74
10
140
24
28
16
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83351240--83351480
121
2.0
121
96
0
448
50
1
8
39
1.43
83356391--83356551
81
2.0
80
97
2
297
12
37
13
36
1.83
83358258--83358307
13
3.9
13
89
2
75
32
0
6
62
1.20
83360106--83360141
16
2.2
17
90
9
58
22
0
0
77
0.76
83360305--83360419
59
1.9
59
96
0
212
26
13
29
31
1.93
83360327--83360418
27
3.2
27
64
14
67
26
11
30
31
1.92
83369056--83369089
18
1.9
17
94
5
59
0
23
0
76
0.79
83374386--83377370
4
745.8
4
91
0
4358
45
24
4
25
1.72
83379918--83379955
16
2.6
14
88
12
51
50
7
7
34
1.61
83382780--83382811
4
8.0
4
100
0
64
50
25
0
25
1.50
83389117--83389157
21
2.0
21
90
0
64
29
21
29
19
1.98
83404191--83404236
14
3.4
14
81
6
58
23
2
4
69
1.17
83404191--83404236
13
3.4
13
84
6
56
23
2
4
69
1.17
83409359--83409399
20
2.0
21
85
4
57
26
0
4
68
1.10
83409892--83409926
17
2.1
17
100
0
70
11
17
22
48
1.79
83417821--83418131
46
6.8
46
85
2
340
41
13
23
21
1.88
83417821--83418154
137
2.4
137
78
6
372
42
13
22
21
1.88
83418417--83418449
17
2.0
17
94
5
59
48
0
15
36
1.45
83425184--83425230
24
2.0
24
95
0
85
36
14
25
23
1.93
83427727--83427782
21
2.8
21
81
5
71
37
0
26
35
1.57
83434838--83434866
14
2.1
14
100
0
58
31
20
20
27
1.98
83448245--83448386
71
2.0
71
87
0
203
35
23
14
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83448582--83448624
19
2.2
20
84
12
63
32
20
0
46
1.51
83448991--83449027
18
2.1
18
94
0
65
24
24
0
51
1.49
83449730--83449763
16
2.2
16
89
5
52
0
17
0
82
0.67
83458630--83458654
13
1.9
13
100
0
50
32
4
24
40
1.73
83459797--83459926
47
2.8
47
89
0
179
23
14
28
33
1.94
83460816--83460907
43
2.1
43
93
0
157
17
26
28
28
1.98
83462622--83462663
6
6.8
6
91
2
57
57
0
26
16
1.40
83462787--83462846
31
1.9
31
82
0
75
30
10
15
45
1.78
83466014--83466185
40
4.3
40
88
2
222
25
27
21
25
1.99
83466016--83466238
40
5.6
39
83
5
216
25
27
21
25
1.99
83466014--83466238
80
2.8
79
80
7
240
25
27
21
25
1.99
83466170--83466247
40
1.9
41
82
10
97
26
28
20
24
1.99
83480248--83480341
17
5.5
17
70
16
61
44
3
2
50
1.30
83481516--83481574
31
1.9
30
83
10
75
49
0
23
27
1.51
83489765--83489808
20
2.2
21
80
15
58
43
0
9
47
1.35
83490815--83490853
18
2.1
19
86
13
55
58
0
2
38
1.12
83490799--83490989
19
10.2
18
67
23
85
63
2
1
32
1.15
83490862--83490946
28
3.0
28
73
13
93
63
3
1
31
1.19
83490912--83490988
11
7.8
10
69
22
56
66
3
0
29
1.10
83490905--83491017
40
2.9
38
79
11
97
66
3
0
29
1.14
83493119--83493164
21
2.2
21
92
0
74
10
21
15
52
1.73
83493151--83493196
21
2.2
21
92
0
74
15
23
15
45
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83493161--83493314
21
7.3
21
76
1
112
19
17
15
47
1.83
83493161--83493314
42
3.7
41
80
3
164
19
17
15
47
1.83
83493203--83493333
63
2.1
61
81
2
145
17
17
16
48
1.82
83494556--83494621
20
3.4
20
68
16
66
31
9
21
37
1.85
83494546--83494622
38
2.0
38
100
0
154
31
10
24
33
1.89
83498556--83498597
19
2.3
19
87
4
59
38
9
2
50
1.48
83498933--83499021
43
2.0
45
82
6
110
31
3
1
64
1.17
83499047--83499101
20
2.7
21
75
11
60
25
1
9
63
1.34
83499067--83499138
29
2.5
28
80
13
74
29
1
6
62
1.30
83499064--83499141
31
2.6
29
79
6
84
29
1
6
62
1.28
83499097--83499154
19
3.2
19
80
7
50
31
0
3
65
1.09
83499123--83499185
17
3.6
17
72
21
58
30
1
0
68
0.99
83499135--83499176
20
2.2
20
87
8
61
23
2
0
73
0.94
83499130--83499181
18
2.9
18
80
2
61
30
1
0
67
1.02
83500870--83500902
3
11.0
3
100
0
66
0
66
0
33
0.92
83508827--83508870
22
2.0
22
100
0
88
50
9
4
36
1.55
83513385--83513415
11
2.8
11
100
0
62
32
0
48
19
1.49
83517468--83517560
18
5.2
18
90
0
150
31
16
24
27
1.96
83517468--83517560
36
2.6
36
94
0
168
31
16
24
27
1.96
83532174--83532221
21
2.3
20
89
10
71
39
8
29
22
1.83
83537915--83537949
8
4.4
8
100
0
70
37
0
11
51
1.38
83538277--83538409
41
3.2
41
88
2
178
26
18
24
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83540104--83540291
21
9.0
21
66
2
99
44
16
22
17
1.87
83540137--83540302
42
4.0
42
84
3
190
44
17
22
15
1.86
83542392--83542448
24
2.4
25
79
8
64
50
3
1
43
1.29
83542952--83542976
11
2.3
11
100
0
50
60
0
8
32
1.26
83547290--83547316
12
2.2
12
100
0
54
14
25
22
37
1.93
83547451--83547531
41
2.0
41
90
0
126
23
18
30
27
1.98
83548315--83548344
15
2.0
15
100
0
60
20
0
46
33
1.51
83548562--83548591
7
4.3
7
91
0
51
26
0
36
36
1.57
83548033--83549412
302
4.6
302
92
3
2233
30
2
25
41
1.69
83548864--83548893
7
4.3
7
91
0
51
26
0
36
36
1.57
83549166--83549195
7
4.3
7
91
0
51
26
0
36
36
1.57
83553326--83553356
12
2.6
12
94
0
53
77
3
16
3
1.03
83553938--83554176
87
2.7
87
86
0
307
22
21
22
33
1.98
83557404--83557436
11
3.0
11
91
8
50
0
54
0
45
0.99
83564179--83564440
39
6.7
40
87
7
337
25
22
27
24
2.00
83564971--83565144
92
1.9
92
90
0
276
37
10
20
32
1.86
83567082--83567178
27
3.6
27
88
1
140
30
28
14
25
1.95
83572245--83572415
46
3.7
46
78
13
179
22
18
27
30
1.97
83572241--83572411
93
1.8
92
88
1
261
22
18
28
30
1.98
83579585--83579666
40
2.1
39
93
4
146
34
15
28
20
1.94
83580754--83580802
24
2.0
24
100
0
98
24
28
0
46
1.53
83582387--83582456
34
2.1
34
97
0
131
32
2
15
48
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83592106--83592198
48
1.9
48
95
0
168
32
26
12
27
1.93
83597677--83597795
42
2.9
41
85
6
159
26
24
20
28
1.99
83607385--83607493
43
2.5
43
79
4
112
31
27
14
26
1.95
83607421--83607510
43
2.1
43
85
4
119
33
27
16
22
1.95
83607432--83607529
43
2.3
43
80
0
106
32
24
16
26
1.96
83610243--83610281
20
2.0
20
94
0
69
51
23
2
23
1.61
83614674--83614710
17
2.1
18
90
5
58
13
40
35
10
1.80
83614674--83614710
9
4.2
9
89
6
58
13
40
35
10
1.80
83617671--83617921
50
4.9
50
92
3
358
34
14
22
27
1.94
83617671--83617955
50
5.5
50
88
3
354
34
15
23
26
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322