Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  169  of  322  ( 38559 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55223224--55223318
47
2.0
47
87
0
136
26
31
10
31
1.90
55223974--55224034
19
3.4
18
80
6
70
65
3
6
24
1.32
55223974--55224051
19
4.3
18
73
14
61
65
2
5
26
1.27
55223992--55224049
17
3.3
17
74
9
53
62
1
5
31
1.27
55224334--55224378
22
2.0
22
83
8
56
24
6
4
64
1.37
55236201--55236250
18
2.8
17
77
14
55
2
20
4
74
1.08
55247757--55247796
21
1.9
21
94
0
71
35
15
32
17
1.91
55251810--55251952
63
2.2
64
82
1
162
27
25
26
20
1.99
55257893--55257977
42
2.0
42
88
0
125
41
17
17
23
1.90
55257965--55257996
16
2.0
16
100
0
64
43
6
25
25
1.77
55259174--55259214
12
3.2
13
80
16
50
56
0
7
36
1.27
55259783--55259819
7
5.3
7
90
0
56
78
0
0
21
0.75
55262775--55262804
16
1.9
15
93
6
51
30
10
13
46
1.75
55263490--55263536
23
2.0
23
100
0
94
46
8
8
36
1.65
55264101--55264141
13
3.1
13
85
3
55
21
2
0
75
0.92
55266013--55266213
3
66.3
3
73
14
128
64
1
6
27
1.27
55266027--55266110
26
3.1
26
76
8
71
69
3
5
21
1.26
55266013--55266212
28
7.4
27
69
16
105
64
1
6
28
1.27
55267874--55268000
43
2.9
42
77
7
137
28
22
18
30
1.97
55267885--55268403
88
5.8
88
70
15
368
27
21
18
31
1.97
55268069--55268179
43
2.6
43
80
11
104
30
26
17
26
1.97
55267888--55268361
178
2.6
179
86
3
639
28
21
18
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55268286--55268403
45
2.7
44
82
11
143
27
23
22
27
1.99
55272704--55272880
43
4.0
43
76
14
157
29
22
16
31
1.96
55274223--55274344
43
2.8
44
82
4
151
28
25
18
27
1.98
55277153--55277212
21
2.8
20
73
14
57
41
0
3
55
1.16
55281188--55281273
9
9.6
9
86
5
120
44
19
9
26
1.81
55281293--55281339
6
7.5
6
86
9
67
17
0
4
78
0.90
55281298--55281336
20
2.0
20
94
0
69
20
0
5
74
1.01
55281364--55281388
13
1.9
13
100
0
50
12
0
48
40
1.40
55281365--55281402
18
2.1
18
95
0
67
7
2
47
42
1.46
55291940--55292115
3
58.3
3
72
12
94
63
2
6
26
1.33
55291954--55292084
29
4.6
29
70
15
76
64
3
7
24
1.34
55292013--55292084
32
2.3
31
78
9
74
66
1
8
23
1.27
55292050--55292120
28
2.6
28
76
8
76
61
1
5
30
1.27
55293035--55293082
14
3.4
14
80
13
53
0
8
20
70
1.12
55294534--55294684
43
3.5
43
81
6
180
31
24
15
29
1.95
55297784--55297851
25
2.8
25
77
2
75
30
20
26
22
1.98
55299110--55299198
44
2.0
44
97
0
169
47
11
2
39
1.52
55299501--55299560
12
5.5
11
78
13
61
60
0
10
30
1.30
55299830--55299902
33
2.2
33
81
13
89
28
1
1
68
1.06
55299923--55299979
19
2.8
20
81
5
53
54
3
3
38
1.35
55299904--55300028
66
1.9
66
82
11
157
53
4
4
37
1.41
55300074--55300121
24
2.0
24
87
0
69
37
4
2
56
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55310719--55310777
30
2.0
30
96
0
109
40
13
16
28
1.87
55317311--55317352
20
2.2
19
83
12
50
19
21
2
57
1.52
55325277--55325323
20
2.3
20
100
0
94
36
0
17
46
1.48
55331968--55332101
65
2.1
65
94
0
232
24
13
29
32
1.93
55333065--55333124
10
6.1
10
79
9
70
68
1
6
23
1.22
55333065--55333124
20
3.1
19
85
7
84
68
1
6
23
1.22
55333116--55333168
23
2.3
23
93
0
88
60
9
3
26
1.45
55333785--55333975
96
2.0
98
88
2
287
32
24
14
28
1.94
55334477--55334506
15
2.0
15
100
0
60
40
33
26
0
1.57
55334746--55334788
12
3.5
11
82
17
50
76
0
2
20
0.89
55334741--55334788
15
3.2
15
78
18
55
77
0
2
20
0.88
55342175--55342396
46
4.8
46
83
7
288
21
21
28
28
1.98
55342171--55342396
93
2.4
94
88
3
325
21
21
29
27
1.99
55343978--55344023
10
4.6
10
86
5
58
67
2
2
28
1.14
55343974--55344033
20
3.0
19
78
9
66
68
3
5
23
1.24
55346971--55347120
67
2.2
67
81
8
171
32
17
28
21
1.96
55346995--55347178
67
2.8
64
77
8
194
29
17
29
22
1.97
55351418--55351567
67
2.2
67
81
8
171
32
17
28
21
1.96
55351442--55351625
67
2.8
64
77
8
194
29
17
29
22
1.97
55356697--55356739
20
2.2
20
88
8
63
72
2
4
20
1.14
55358470--55358525
25
2.2
24
84
9
76
73
1
7
17
1.15
55358470--55358525
5
11.2
5
73
7
51
73
1
7
17
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55365662--55365711
18
2.9
17
80
11
57
74
0
2
24
0.93
55375276--55375335
17
3.5
17
80
11
68
78
3
1
16
0.97
55375276--55375337
12
5.3
12
75
11
58
77
3
1
17
0.98
55378246--55378302
24
2.4
24
91
5
89
19
5
24
50
1.68
55379261--55379318
30
1.9
30
89
0
89
32
12
25
29
1.92
55379898--55380170
50
5.5
50
85
8
337
30
19
29
21
1.97
55379898--55380123
100
2.3
100
100
0
452
31
18
28
21
1.97
55379898--55380170
150
1.8
149
84
8
376
30
19
29
21
1.97
55387065--55387104
13
3.1
13
88
0
53
20
37
27
15
1.92
55387098--55387143
20
2.3
20
100
0
92
23
21
23
30
1.99
55387439--55387472
18
1.9
18
94
5
61
26
35
8
29
1.87
55395874--55396284
94
4.3
94
71
12
243
28
19
29
22
1.98
55396116--55396284
50
3.4
49
77
13
175
30
19
28
21
1.97
55397031--55397161
55
2.4
55
81
5
140
22
23
29
24
1.99
55397689--55397732
3
14.7
3
100
0
88
65
0
0
34
0.93
55400450--55400510
19
3.1
19
81
9
70
47
1
0
50
1.10
55400738--55400801
13
4.9
13
71
7
58
35
26
6
31
1.81
55412391--55412435
16
2.8
17
87
9
60
64
0
6
28
1.19
55413021--55413071
19
2.8
18
74
11
50
27
3
3
64
1.28
55422312--55422407
44
2.2
44
90
0
156
23
11
28
36
1.90
55425112--55425141
11
2.6
12
94
5
53
33
0
10
56
1.32
55427218--55427269
25
2.1
25
100
0
104
32
13
11
42
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55428620--55428644
3
8.3
3
100
0
50
32
36
0
32
1.58
55430300--55430343
18
2.4
18
88
0
61
13
50
0
36
1.42
55430300--55430361
21
3.0
21
83
4
63
14
50
0
35
1.43
55430668--55430712
15
3.0
15
83
0
63
17
40
0
42
1.50
55435912--55435978
35
1.9
35
84
3
91
43
8
10
37
1.71
55445289--55445363
35
2.1
36
92
4
127
38
8
12
41
1.72
55449922--55450001
42
1.9
42
84
5
108
22
33
25
18
1.97
55450556--55450594
16
2.3
18
86
8
55
61
0
2
35
1.10
55456531--55456597
35
1.9
35
90
3
109
41
10
10
37
1.74
55466939--55466967
5
6.0
5
92
8
51
20
0
0
79
0.74
55467188--55467216
5
6.0
5
92
8
51
20
0
0
79
0.74
55466858--55467354
249
2.0
249
100
0
994
22
17
19
40
1.91
55470938--55470969
5
6.6
5
92
7
57
18
0
0
81
0.70
55470938--55470968
9
3.3
9
91
8
53
19
0
0
80
0.71
55475259--55475291
5
6.8
5
96
3
59
84
0
0
15
0.61
55480386--55480453
16
4.2
16
96
0
127
25
1
35
38
1.65
55480689--55480723
18
2.0
17
88
5
52
54
0
0
45
0.99
55480576--55480892
157
2.0
157
95
0
562
44
2
4
47
1.38
55480826--55480867
15
2.7
16
82
14
52
52
2
0
45
1.13
55480835--55480876
15
2.9
15
82
10
52
52
0
0
47
1.00
55483881--55483906
11
2.4
11
100
0
52
46
7
38
7
1.61
55486720--55486780
30
2.0
30
100
0
122
31
19
9
39
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55488311--55488550
50
4.9
50
86
6
339
26
17
31
24
1.97
55488311--55488600
95
3.0
94
84
7
330
25
18
31
24
1.97
55489934--55489958
4
6.2
4
100
0
50
24
0
0
76
0.80
55492990--55493092
27
3.8
28
81
14
126
40
17
10
31
1.84
55493045--55493106
27
2.3
27
86
5
81
45
19
9
25
1.81
55492992--55493106
54
2.1
54
83
3
142
42
17
11
28
1.84
55493511--55493613
27
3.8
27
74
13
77
20
15
20
43
1.87
55493878--55493946
32
2.2
32
82
10
79
13
20
26
40
1.88
55495048--55495077
15
2.0
15
93
0
51
70
13
10
6
1.34
55496652--55496712
32
1.9
32
96
0
113
52
6
1
39
1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322