genome.fa.s2.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Length:  106989029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   

This is table  97  of  322  ( 38559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31474969--31475015	20	2.3	20	85	0	58	53	4	4	38	1.40
31481604--31481668	28	2.3	28	92	5	105	33	26	7	32	1.85
31481774--31481863	28	3.2	27	84	7	110	21	24	22	32	1.98
31481784--31481874	27	3.2	28	82	4	94	23	26	18	31	1.97
31481774--31481888	55	2.1	56	82	8	137	20	24	20	34	1.96
31483180--31483295	42	2.8	42	86	0	169	30	19	23	26	1.98
31483707--31483779	21	3.5	21	81	7	85	1	47	17	32	1.56
31483754--31483783	15	2.0	15	100	0	60	0	46	13	40	1.43
31484176--31484204	14	2.1	14	93	6	51	58	6	0	34	1.25
31487522--31487547	12	2.2	12	100	0	52	30	26	7	34	1.85
31489240--31489570	9	35.4	9	67	18	137	37	1	13	47	1.54
31489235--31489526	74	3.9	74	94	1	514	36	2	13	46	1.56
31489309--31489592	47	5.8	52	72	16	164	37	2	12	47	1.54
31489462--31489592	49	2.7	47	91	4	217	40	0	11	48	1.39
31489509--31489594	40	2.2	40	81	12	97	39	0	11	48	1.40
31489725--31489973	89	2.8	91	90	3	396	53	4	6	35	1.49
31494446--31494498	26	2.1	26	92	3	90	50	3	5	39	1.44
31494449--31494506	16	3.4	17	76	9	55	46	3	5	44	1.42
31494887--31495014	14	8.7	14	68	9	58	46	28	0	24	1.58
31494848--31494936	37	2.4	37	81	3	99	42	31	2	23	1.66
31494884--31494941	22	2.6	22	77	0	62	46	31	0	22	1.52
31494954--31495014	14	4.4	14	74	0	59	45	29	1	22	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31495332--31495466	41	3.3	41	88	1	189	30	19	20	29	1.97
31497253--31497347	50	1.9	50	89	4	147	24	27	18	29	1.98
31502446--31502539	26	3.6	27	80	7	77	41	23	7	27	1.81
31502465--31502757	27	11.0	26	77	9	135	42	21	6	29	1.78
31502497--31502841	27	12.8	26	77	8	248	42	20	6	29	1.78
31502481--31502811	81	4.1	77	81	8	317	43	21	6	29	1.77
31503077--31503199	41	3.0	41	85	0	165	23	21	26	28	1.99
31503338--31503400	22	2.9	21	81	6	72	20	22	22	34	1.96
31507791--31507888	27	3.5	28	88	5	128	32	28	13	25	1.93
31512138--31512322	27	6.8	26	74	13	106	41	19	8	31	1.81
31512184--31512287	54	1.9	55	84	9	142	46	21	4	27	1.71
31512183--31512317	55	2.5	53	81	9	148	43	20	6	28	1.77
31512452--31512494	20	2.2	20	83	8	52	23	6	30	39	1.81
31512583--31512705	41	3.0	41	84	7	169	20	18	30	30	1.96
31512846--31512904	22	2.7	22	86	7	84	22	23	20	33	1.97
31513305--31513368	32	2.0	32	90	0	101	26	17	25	31	1.97
31517672--31517761	35	2.6	34	80	1	99	27	21	8	42	1.82
31526216--31526331	24	4.8	24	76	14	105	73	2	20	3	1.10
31526203--31526324	6	19.8	6	66	17	63	72	3	21	3	1.14
31526218--31526331	49	2.3	48	91	4	183	73	2	20	3	1.10
31526265--31526330	29	2.2	29	81	7	71	75	1	19	3	1.01
31526203--31526330	10	11.7	10	69	21	55	72	3	21	3	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31526293--31526329	20	1.9	20	94	5	67	78	2	16	2	0.98
31531069--31531242	40	4.4	40	85	3	147	23	22	27	26	2.00
31531065--31531242	80	2.2	80	82	4	200	23	23	27	25	2.00
31532855--31533005	75	2.0	75	94	0	266	29	22	22	25	1.99
31553975--31554030	27	2.1	27	82	0	67	48	7	17	26	1.73
31557184--31557263	27	3.0	27	96	0	142	43	18	6	31	1.75
31563431--31563601	48	3.7	46	73	12	145	30	18	26	23	1.98
31563574--31564398	50	16.5	50	100	0	1650	33	18	26	22	1.96
31566156--31566205	22	2.3	22	82	6	57	20	12	2	66	1.34
31567346--31567396	20	2.6	19	78	6	57	49	11	9	29	1.72
31567408--31567494	27	3.3	27	95	1	149	43	17	6	32	1.75
31568417--31568514	38	2.6	37	75	10	99	39	5	7	47	1.53
31571752--31571914	43	3.8	43	76	8	154	26	16	25	31	1.97
31576635--31576804	40	4.3	40	88	0	225	25	28	21	24	1.99
31581906--31582007	43	2.4	43	74	9	100	26	15	25	32	1.96
31583893--31584870	50	19.5	50	93	1	1561	32	26	14	26	1.94
31584693--31584919	50	4.5	50	79	7	280	31	22	20	25	1.98
31586828--31586889	30	2.0	32	87	6	92	29	19	16	35	1.93
31588445--31588514	36	1.9	36	94	0	122	30	30	8	31	1.87
31597083--31597179	46	2.1	46	86	3	142	26	31	16	24	1.96
31599189--31599373	79	2.3	81	82	7	218	25	23	26	24	2.00
31599190--31599373	40	4.6	39	79	9	185	26	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31599241--31599406	79	2.1	79	81	6	194	28	21	25	24	1.99
31600676--31600800	64	1.9	66	91	3	209	12	23	29	34	1.92
31602683--31602727	22	2.0	22	83	8	56	37	4	2	55	1.32
31603369--31603414	21	2.3	20	78	14	51	30	6	17	45	1.73
31607136--31607287	42	3.6	42	83	2	180	30	13	24	31	1.94
31607720--31607806	41	2.2	40	89	4	147	34	11	17	36	1.86
31608785--31608839	28	1.9	29	85	3	76	16	18	43	21	1.88
31609621--31609936	47	6.7	46	78	10	232	23	30	19	27	1.98
31609621--31609935	141	2.2	140	81	6	341	23	30	19	27	1.98
31609626--31609932	94	3.3	91	76	12	284	23	30	18	27	1.98
31615225--31615376	76	2.0	76	96	0	277	40	11	15	32	1.83
31638534--31638559	12	2.2	12	100	0	52	30	7	0	61	1.24
31640574--31640697	43	2.9	43	92	0	203	33	23	15	28	1.95
31640538--31640697	86	1.9	85	84	5	214	33	21	16	28	1.96
31645708--31645822	27	4.1	28	75	5	92	35	20	23	20	1.96
31645928--31645988	28	2.2	28	93	0	104	31	8	27	32	1.86
31649799--31649946	39	3.8	38	88	4	206	32	27	21	18	1.97
31649809--31649979	39	4.4	40	85	7	203	28	29	22	19	1.98
31649807--31649978	77	2.2	77	83	8	215	28	29	22	19	1.98
31654115--31654154	13	3.1	13	96	0	71	40	25	0	35	1.56
31660563--31660622	30	2.0	30	86	0	84	40	8	23	28	1.83
31662695--31662863	40	4.2	40	88	3	243	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31674253--31674319	34	2.0	34	87	0	98	28	2	37	31	1.72
31684234--31684449	43	5.1	43	79	7	217	34	23	13	28	1.93
31691831--31691860	13	2.3	13	94	0	51	23	0	20	56	1.42
31697373--31697407	18	1.9	18	94	0	61	11	17	48	22	1.79
31699374--31699452	37	2.1	37	88	0	113	26	31	17	24	1.97
31699720--31699746	13	2.1	13	100	0	54	22	33	0	44	1.53
31699573--31699863	47	6.1	47	83	7	347	28	31	8	31	1.86
31706275--31706303	13	2.2	13	100	0	58	55	13	0	31	1.39
31717062--31717270	43	4.9	42	78	9	183	34	25	13	26	1.93
31717100--31717271	86	2.0	86	83	10	217	34	27	13	23	1.93
31720628--31720672	23	2.0	22	82	4	54	28	2	22	46	1.63
31731129--31731471	40	8.6	40	91	2	485	24	20	27	27	1.99
31735302--31735453	29	5.4	28	76	9	123	28	30	14	26	1.95
31743055--31743114	28	2.1	28	85	11	79	28	28	13	30	1.94
31743329--31743367	16	2.4	16	86	0	51	7	17	23	51	1.71
31751244--31751296	27	2.0	27	88	0	79	22	30	11	35	1.89
31757201--31757260	30	2.0	30	90	0	93	28	25	8	38	1.84
31766240--31766277	14	2.7	14	88	8	51	86	0	13	0	0.56
31766240--31766277	13	3.0	12	92	7	58	86	0	13	0	0.56
31773083--31773107	6	4.2	6	100	0	50	68	0	32	0	0.90
31777485--31777592	28	3.9	28	78	8	112	26	31	15	25	1.96
31780449--31780727	141	2.0	141	97	0	522	26	11	23	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31780794--31780860	30	2.2	30	97	0	125	28	11	16	43	1.83
31780808--31780864	18	3.5	18	64	26	54	31	15	14	38	1.87
31782292--31782391	27	3.7	27	88	5	123	28	11	23	38	1.88
31793808--31794013	27	7.6	27	75	8	161	40	23	8	27	1.83
31793808--31794013	81	2.5	81	76	7	195	40	23	8	27	1.83
31794006--31794112	27	4.0	27	83	0	133	33	19	22	24	1.97
31794460--31794518	22	2.7	22	81	5	66	20	27	22	30	1.98
31794675--31794776	27	3.8	26	88	5	123	18	24	21	35	1.96
31794936--31795148	6	34.8	6	76	16	181	19	17	15	47	1.82
31794926--31795109	31	6.0	31	92	0	282	19	17	15	47	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322